| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG944221 |
Definition |
Mycobacterium phage Scowl, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
51690 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
91 |
%GC |
63.78 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVJ51428.1 | MG944221_p76 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46146 | 46658 |
| AVJ51444.1 | MG944221_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16056 | 16427 |
| AVJ51371.1 | MG944221_p17 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 13194 | 13430 |
| AVJ51445.1 | MG944221_p56 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39010 | 39552 |
| AVJ51386.1 | MG944221_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28011 | 28331 |
| AVJ51412.1 | MG944221_p60 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39919 | 40383 |
| AVJ51382.1 | MG944221_p29 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 23643 | 24089 |
| AVJ51436.1 | MG944221_p84 | hypothetical protein | phrog_8429 | NifU-like Fe-S cluster assembly protein | moron, auxiliary metabolic gene and host takeover | -1 | 48600 | 49022 |
| AVJ51376.1 | MG944221_p22 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15095 | 15943 |
| AVJ51419.1 | MG944221_p67 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42206 | 42499 |
| AVJ51364.1 | MG944221_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 5114 | 6547 |
| AVJ51396.1 | MG944221_p43 | hypothetical protein | phrog_9812 | unknown function | unknown function | -1 | 32731 | 32982 |
| AVJ51368.1 | MG944221_p14 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10649 | 11530 |
| AVJ51399.1 | MG944221_p46 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 35262 | 35390 |
| AVJ51356.1 | MG944221_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 986 | 1294 |
| AVJ51411.1 | MG944221_p59 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 39757 | 39900 |
| AVJ51391.1 | MG944221_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31551 | 31823 |
| AVJ51416.1 | MG944221_p64 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41096 | 41917 |
| AVJ51355.1 | MG944221_p1 | hypothetical protein | phrog_17889 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 540 | 989 |
| AVJ51433.1 | MG944221_p81 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47870 | 48037 |
| AVJ51372.1 | MG944221_p18 | head-to-tail connector complex protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13430 | 13879 |
| AVJ51373.1 | MG944221_p19 | head-to-tail connector complex protein | phrog_320 | head closure Hc1 | connector | 1 | 13879 | 14241 |
| AVJ51421.1 | MG944221_p69 | exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42712 | 43515 |
| AVJ51390.1 | MG944221_p37 | integrase | phrog_95 | integrase | integration and excision | 1 | 29862 | 31430 |
| AVJ51417.1 | MG944221_p65 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 41917 | 42090 |
| AVJ51395.1 | MG944221_p42 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32462 | 32734 |
| AVJ51401.1 | MG944221_p48 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35660 | 36163 |
| AVJ51437.1 | MG944221_p85 | tRNA-methyltransferase | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | -1 | 49019 | 49942 |
| AVJ51442.1 | MG944221_p90 | hypothetical protein | phrog_828 | unknown function | unknown function | 1 | 50695 | 50898 |
| AVJ51381.1 | MG944221_p28 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21803 | 23605 |
| AVJ51389.1 | MG944221_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29483 | 29779 |
| AVJ51441.1 | MG944221_p89 | hypothetical protein | phrog_3574 | unknown function | unknown function | 1 | 50462 | 50659 |
| AVJ51418.1 | MG944221_p66 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 42087 | 42209 |
| AVJ51429.1 | MG944221_p77 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46920 | 47219 |
| AVJ51363.1 | MG944221_p9 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4857 | 5114 |
| AVJ51408.1 | MG944221_p55 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38670 | 39191 |
| AVJ51369.1 | MG944221_p15 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11589 | 12101 |
| AVJ51415.1 | MG944221_p63 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 40830 | 41099 |
| AVJ51424.1 | MG944221_p72 | hypothetical protein | phrog_6068 | unknown function | unknown function | -1 | 45020 | 45253 |
| AVJ51406.1 | MG944221_p53 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38027 | 38197 |
| AVJ51438.1 | MG944221_p86 | hypothetical protein | phrog_14752 | unknown function | unknown function | -1 | 49939 | 50091 |
| AVJ51362.1 | MG944221_p8 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4589 | 4849 |
| AVJ51398.1 | MG944221_p45 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33395 | 35221 |
| AVJ51402.1 | MG944221_p49 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36160 | 36342 |
| AVJ51388.1 | MG944221_p35 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28529 | 29362 |
| AVJ51366.1 | MG944221_p12 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7525 | 9213 |
| AVJ51426.1 | MG944221_p74 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45395 | 45712 |
| AVJ51385.1 | MG944221_p32 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24802 | 27918 |
| AVJ51361.1 | MG944221_p7 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3865 | 4575 |
| AVJ51358.1 | MG944221_p4 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1451 | 1891 |
| AVJ51380.1 | MG944221_p27 | minor tail protein | phrog_1543 | minor tail protein | tail | 1 | 21621 | 21803 |
| AVJ51397.1 | MG944221_p44 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 33018 | 33374 |
| AVJ51377.1 | MG944221_p23 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16056 | 16849 |
| AVJ51430.1 | MG944221_p78 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47216 | 47485 |
| AVJ51422.1 | MG944221_p70 | DNA binding domain protein | phrog_4285 | transposase | integration and excision | -1 | 43512 | 44222 |
| AVJ51365.1 | MG944221_p11 | lysin B | phrog_102 | endolysin | lysis | 1 | 6537 | 7505 |
| AVJ51413.1 | MG944221_p61 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 40370 | 40456 |
| AVJ51392.1 | MG944221_p39 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 31820 | 32206 |
| AVJ51393.1 | MG944221_p40 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 32203 | 32373 |
| AVJ51439.1 | MG944221_p87 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 50088 | 50300 |
| AVJ51359.1 | MG944221_p5 | hypothetical protein | phrog_20136 | unknown function | unknown function | 1 | 2239 | 2490 |
| AVJ51375.1 | MG944221_p21 | head-to-tail connector complex protein | phrog_123 | tail terminator | connector | 1 | 14640 | 15086 |
| AVJ51435.1 | MG944221_p83 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48183 | 48332 |
| AVJ51432.1 | MG944221_p80 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 47682 | 47870 |
| AVJ51384.1 | MG944221_p31 | minor tail protein | phrog_1397 | unknown function | unknown function | 1 | 24430 | 24777 |
| AVJ51443.1 | MG944221_p91 | hypothetical protein | phrog_13308 | unknown function | unknown function | -1 | 50948 | 51298 |
| AVJ51400.1 | MG944221_p47 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35387 | 35617 |
| AVJ51410.1 | MG944221_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39695 | 39760 |
| AVJ51357.1 | MG944221_p3 | hypothetical protein | phrog_4152 | unknown function | unknown function | 1 | 1291 | 1437 |
| AVJ51409.1 | MG944221_p57 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39531 | 39695 |
| AVJ51427.1 | MG944221_p75 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 45709 | 46104 |
| AVJ51394.1 | MG944221_p41 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32370 | 32465 |
| AVJ51367.1 | MG944221_p13 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9210 | 10652 |
| AVJ51440.1 | MG944221_p88 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 50325 | 50444 |
| AVJ51425.1 | MG944221_p73 | hypothetical protein | phrog_5947 | unknown function | unknown function | -1 | 45246 | 45398 |
| AVJ51423.1 | MG944221_p71 | hypothetical protein | phrog_4604 | unknown function | unknown function | -1 | 44562 | 45023 |
| AVJ51420.1 | MG944221_p68 | helix-turn-helix DNA binding protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 42503 | 42685 |
| AVJ51404.1 | MG944221_p51 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 37123 | 37257 |
| AVJ51360.1 | MG944221_p6 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2785 | 3855 |
| AVJ51414.1 | MG944221_p62 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | -1 | 40453 | 40833 |
| AVJ51378.1 | MG944221_p25 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16861 | 19521 |
| AVJ51370.1 | MG944221_p16 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12111 | 13115 |
| AVJ51431.1 | MG944221_p79 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47482 | 47685 |
| AVJ51379.1 | MG944221_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19545 | 21602 |
| AVJ51434.1 | MG944221_p82 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48034 | 48162 |
| AVJ51383.1 | MG944221_p30 | minor tail protein | phrog_981 | minor tail protein | tail | 1 | 24086 | 24433 |
| AVJ51387.1 | MG944221_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28341 | 28532 |
| AVJ51374.1 | MG944221_p20 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14241 | 14636 |
| AVJ51407.1 | MG944221_p54 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 38194 | 38673 |
| AVJ51405.1 | MG944221_p52 | recombination directionality factor | phrog_221 | metallo-phosphoesterase | other | -1 | 37263 | 38030 |
| AVJ51403.1 | MG944221_p50 | helix-turn-helix DNA binding protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36339 | 37130 |