| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG948468 |
Definition |
Pantoea phage vB_PagS_Vid5, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vidquintavirus; Pantoea virus Vid5. |
DB of origin |
NUCCORE |
Length |
61437 |
Host Name |
Pantoea agglomerans |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
99 |
%GC |
48.82 |
Number of singletons |
50 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVJ51811.1 | MG948468_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44453 | 44632 |
| AVJ51782.1 | MG948468_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23712 | 23981 |
| AVJ51763.1 | MG948468_p8 | hypothetical protein | phrog_10966 | unknown function | unknown function | 1 | 6022 | 6921 |
| AVJ51804.1 | MG948468_p49 | ATPase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 39989 | 40708 |
| AVJ51806.1 | MG948468_p51 | RNAseH | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | -1 | 41681 | 42346 |
| AVJ51778.1 | MG948468_p23 | hypothetical protein | phrog_425 | membrane associated protein | moron, auxiliary metabolic gene and host takeover | 1 | 20891 | 21871 |
| AVJ51838.1 | MG948468_p83 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55098 | 55379 |
| AVJ51776.1 | MG948468_p21 | hypothetical protein | phrog_2134 | unknown function | unknown function | 1 | 17765 | 18166 |
| AVJ51768.1 | MG948468_p13 | neck protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 10671 | 11075 |
| AVJ51820.1 | MG948468_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49054 | 49479 |
| AVJ51760.1 | MG948468_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4609 | 4728 |
| AVJ51813.1 | MG948468_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44902 | 45192 |
| AVJ51800.1 | MG948468_p45 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 35863 | 37719 |
| AVJ51780.1 | MG948468_p25 | hypothetical protein | phrog_1591 | tail fiber protein | tail | 1 | 22230 | 23465 |
| AVJ51817.1 | MG948468_p62 | hypothetical protein | phrog_11967 | unknown function | unknown function | -1 | 47998 | 48231 |
| AVJ51842.1 | MG948468_p87 | hypothetical protein | singleton | unknown function | unknown function | 1 | 56584 | 56760 |
| AVJ51788.1 | MG948468_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27825 | 28094 |
| AVJ51833.1 | MG948468_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53495 | 53719 |
| AVJ51821.1 | MG948468_p66 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49469 | 49678 |
| AVJ51791.1 | MG948468_p36 | 6-carboxytetrahydropterin synthase | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | -1 | 29895 | 30440 |
| AVJ51784.1 | MG948468_p29 | DNA polymerase alpha subunit | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 24372 | 26402 |
| AVJ51810.1 | MG948468_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44121 | 44252 |
| AVJ51834.1 | MG948468_p79 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53734 | 53934 |
| AVJ51803.1 | MG948468_p48 | hypothetical protein | phrog_13350 | unknown function | unknown function | -1 | 38995 | 39984 |
| AVJ51852.1 | MG948468_p97 | endolysin | phrog_2860 | endolysin | head and packaging | 1 | 59731 | 60333 |
| AVJ51789.1 | MG948468_p34 | queuosine tRNA ribosyltransferase | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | -1 | 28094 | 29014 |
| AVJ51772.1 | MG948468_p17 | hypothetical protein | phrog_4966 | unknown function | unknown function | 1 | 12979 | 13314 |
| AVJ51805.1 | MG948468_p50 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 40771 | 41679 |
| AVJ51781.1 | MG948468_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23492 | 23710 |
| AVJ51847.1 | MG948468_p92 | hypothetical protein | singleton | unknown function | unknown function | 1 | 57829 | 58074 |
| AVJ51825.1 | MG948468_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50347 | 50589 |
| AVJ51854.1 | MG948468_p99 | lysis regulatory protein | phrog_5975 | unknown function | unknown function | 1 | 60739 | 61299 |
| AVJ51818.1 | MG948468_p63 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48309 | 48698 |
| AVJ51762.1 | MG948468_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5881 | 6003 |
| AVJ51816.1 | MG948468_p61 | primase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 45645 | 47987 |
| AVJ51809.1 | MG948468_p54 | endonuclease | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 43666 | 44121 |
| AVJ51761.1 | MG948468_p6 | major capsid protein | phrog_247 | major head protein | head and packaging | 1 | 4741 | 5832 |
| AVJ51795.1 | MG948468_p40 | queuosine biosynthesis protein | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | -1 | 32302 | 33060 |
| AVJ51786.1 | MG948468_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27345 | 27560 |
| AVJ51787.1 | MG948468_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27557 | 27823 |
| AVJ51839.1 | MG948468_p84 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55395 | 55595 |
| AVJ51777.1 | MG948468_p22 | tail fiber protein | phrog_31 | central tail fiber J | tail | 1 | 18168 | 20891 |
| AVJ51849.1 | MG948468_p94 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 58535 | 58903 |
| AVJ51824.1 | MG948468_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50005 | 50193 |
| AVJ51759.1 | MG948468_p4 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 3679 | 4605 |
| AVJ51846.1 | MG948468_p91 | hypothetical protein | phrog_5486 | unknown function | unknown function | 1 | 57480 | 57845 |
| AVJ51807.1 | MG948468_p52 | DNA binding protein | phrog_2480 | unknown function | unknown function | -1 | 42346 | 42762 |
| AVJ51756.1 | MG948468_p1 | terminase small subunit | phrog_5334 | terminase small subunit | head and packaging | 1 | 1 | 546 |
| AVJ51770.1 | MG948468_p15 | major tail protein | phrog_290 | minor tail protein | tail | 1 | 11548 | 12480 |
| AVJ51799.1 | MG948468_p44 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35488 | 35862 |
| AVJ51808.1 | MG948468_p53 | nucleotide pyrophosphohydrolase | phrog_229 | MazG-like pyrophosphatase | other | -1 | 42829 | 43656 |
| AVJ51841.1 | MG948468_p86 | hypothetical protein | singleton | unknown function | unknown function | 1 | 56396 | 56587 |
| AVJ51765.1 | MG948468_p10 | tail spike protein | phrog_4250 | EPS depolymerase | tail | 1 | 7122 | 9779 |
| AVJ51796.1 | MG948468_p41 | VUT family protein | phrog_4899 | unknown function | unknown function | -1 | 33050 | 33688 |
| AVJ51771.1 | MG948468_p16 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | 1 | 12497 | 12937 |
| AVJ51758.1 | MG948468_p3 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 2131 | 3657 |
| AVJ51790.1 | MG948468_p35 | GTP cyclohydrolase type I | phrog_2197 | GTP cyclohydrolase | other | -1 | 29083 | 29898 |
| AVJ51773.1 | MG948468_p18 | tape measure protein | phrog_339 | tail length tape measure protein | tail | 1 | 13314 | 16577 |
| AVJ51851.1 | MG948468_p96 | hypothetical protein | singleton | unknown function | unknown function | 1 | 59357 | 59647 |
| AVJ51764.1 | MG948468_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6934 | 7107 |
| AVJ51783.1 | MG948468_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23993 | 24313 |
| AVJ51812.1 | MG948468_p57 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44634 | 44888 |
| AVJ51801.1 | MG948468_p46 | exonuclease | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 37719 | 38654 |
| AVJ51775.1 | MG948468_p20 | hypothetical protein | phrog_2048 | tail protein | tail | 1 | 17170 | 17757 |
| AVJ51835.1 | MG948468_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53984 | 54544 |
| AVJ51826.1 | MG948468_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50589 | 50828 |
| AVJ51848.1 | MG948468_p93 | hypothetical protein | phrog_4049 | unknown function | unknown function | 1 | 58071 | 58538 |
| AVJ51831.1 | MG948468_p76 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52121 | 52498 |
| AVJ51844.1 | MG948468_p89 | hypothetical protein | singleton | unknown function | unknown function | 1 | 56949 | 57188 |
| AVJ51830.1 | MG948468_p75 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51705 | 52124 |
| AVJ51837.1 | MG948468_p82 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54858 | 55085 |
| AVJ51828.1 | MG948468_p73 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51054 | 51266 |
| AVJ51823.1 | MG948468_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49889 | 49993 |
| AVJ51822.1 | MG948468_p67 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49680 | 49889 |
| AVJ51757.1 | MG948468_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 533 | 2119 |
| AVJ51814.1 | MG948468_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45192 | 45326 |
| AVJ51785.1 | MG948468_p30 | DNA polymerase beta subunit | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 26399 | 27361 |
| AVJ51792.1 | MG948468_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30440 | 30652 |
| AVJ51850.1 | MG948468_p95 | hypothetical protein | phrog_1040 | peptidase HslV family | other | 1 | 58900 | 59379 |
| AVJ51832.1 | MG948468_p77 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52495 | 53154 |
| AVJ51815.1 | MG948468_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45396 | 45617 |
| AVJ51794.1 | MG948468_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32114 | 32305 |
| AVJ51798.1 | MG948468_p43 | hypothetical protein | phrog_7864 | unknown function | unknown function | -1 | 34755 | 35486 |
| AVJ51769.1 | MG948468_p14 | tail completion protein | phrog_179 | tail terminator | connector | 1 | 11072 | 11533 |
| AVJ51767.1 | MG948468_p12 | head closure protein | phrog_161 | head closure Hc1 | connector | 1 | 10297 | 10674 |
| AVJ51853.1 | MG948468_p98 | holin | phrog_785 | holin | lysis | 1 | 60363 | 60758 |
| AVJ51843.1 | MG948468_p88 | hypothetical protein | singleton | unknown function | unknown function | 1 | 56747 | 56956 |
| AVJ51829.1 | MG948468_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51259 | 51708 |
| AVJ51766.1 | MG948468_p11 | adaptor | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 9788 | 10297 |
| AVJ51774.1 | MG948468_p19 | hypothetical protein | phrog_1302 | distal tail protein | tail | 1 | 16580 | 17170 |
| AVJ51779.1 | MG948468_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21879 | 22097 |
| AVJ51845.1 | MG948468_p90 | hypothetical protein | singleton | unknown function | unknown function | 1 | 57185 | 57487 |
| AVJ51802.1 | MG948468_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38719 | 38949 |
| AVJ51797.1 | MG948468_p42 | transcriptional activator | phrog_11298 | unknown function | unknown function | -1 | 33753 | 34640 |
| AVJ51819.1 | MG948468_p64 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48667 | 49050 |
| AVJ51840.1 | MG948468_p85 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55692 | 56396 |
| AVJ51836.1 | MG948468_p81 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54572 | 54814 |
| AVJ51827.1 | MG948468_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50836 | 51057 |
| AVJ51793.1 | MG948468_p38 | glutamine amidotransferase class-II | phrog_10428 | L-glutamine-D-fructose-6-phosphate aminotransferase | other | -1 | 30649 | 32112 |