Genomic map of Pantoea phage vB_PagS_Vid5 (MG948468)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG948468
Definition
Pantoea phage vB_PagS_Vid5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vidquintavirus; Pantoea virus Vid5.
DB of origin
NUCCORE
Length
61437
Host Name
Pantoea agglomerans
Host domain
Bacteria
Is prophage?
undef
Number of proteins
99
%GC
48.82
Number of singletons
50
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AVJ51811.1 MG948468_p56 hypothetical protein singleton unknown function unknown function 1 44453 44632
AVJ51782.1 MG948468_p27 hypothetical protein singleton unknown function unknown function -1 23712 23981
AVJ51763.1 MG948468_p8 hypothetical protein phrog_10966 unknown function unknown function 1 6022 6921
AVJ51804.1 MG948468_p49 ATPase phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 39989 40708
AVJ51806.1 MG948468_p51 RNAseH phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 41681 42346
AVJ51778.1 MG948468_p23 hypothetical protein phrog_425 membrane associated protein moron, auxiliary metabolic gene and host takeover 1 20891 21871
AVJ51838.1 MG948468_p83 hypothetical protein singleton unknown function unknown function 1 55098 55379
AVJ51776.1 MG948468_p21 hypothetical protein phrog_2134 unknown function unknown function 1 17765 18166
AVJ51768.1 MG948468_p13 neck protein phrog_169 tail completion or Neck1 protein connector 1 10671 11075
AVJ51820.1 MG948468_p65 hypothetical protein singleton unknown function unknown function -1 49054 49479
AVJ51760.1 MG948468_p5 hypothetical protein singleton unknown function unknown function 1 4609 4728
AVJ51813.1 MG948468_p58 hypothetical protein singleton unknown function unknown function -1 44902 45192
AVJ51800.1 MG948468_p45 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 35863 37719
AVJ51780.1 MG948468_p25 hypothetical protein phrog_1591 tail fiber protein tail 1 22230 23465
AVJ51817.1 MG948468_p62 hypothetical protein phrog_11967 unknown function unknown function -1 47998 48231
AVJ51842.1 MG948468_p87 hypothetical protein singleton unknown function unknown function 1 56584 56760
AVJ51788.1 MG948468_p33 hypothetical protein singleton unknown function unknown function -1 27825 28094
AVJ51833.1 MG948468_p78 hypothetical protein singleton unknown function unknown function 1 53495 53719
AVJ51821.1 MG948468_p66 hypothetical protein singleton unknown function unknown function -1 49469 49678
AVJ51791.1 MG948468_p36 6-carboxytetrahydropterin synthase phrog_2389 QueD-like 6-pyruvoyl-tetrahydropterin synthase moron, auxiliary metabolic gene and host takeover -1 29895 30440
AVJ51784.1 MG948468_p29 DNA polymerase alpha subunit phrog_1252 DNA polymerase DNA, RNA and nucleotide metabolism -1 24372 26402
AVJ51810.1 MG948468_p55 hypothetical protein singleton unknown function unknown function -1 44121 44252
AVJ51834.1 MG948468_p79 hypothetical protein singleton unknown function unknown function 1 53734 53934
AVJ51803.1 MG948468_p48 hypothetical protein phrog_13350 unknown function unknown function -1 38995 39984
AVJ51852.1 MG948468_p97 endolysin phrog_2860 endolysin head and packaging 1 59731 60333
AVJ51789.1 MG948468_p34 queuosine tRNA ribosyltransferase phrog_887 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover -1 28094 29014
AVJ51772.1 MG948468_p17 hypothetical protein phrog_4966 unknown function unknown function 1 12979 13314
AVJ51805.1 MG948468_p50 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 40771 41679
AVJ51781.1 MG948468_p26 hypothetical protein singleton unknown function unknown function -1 23492 23710
AVJ51847.1 MG948468_p92 hypothetical protein singleton unknown function unknown function 1 57829 58074
AVJ51825.1 MG948468_p70 hypothetical protein singleton unknown function unknown function -1 50347 50589
AVJ51854.1 MG948468_p99 lysis regulatory protein phrog_5975 unknown function unknown function 1 60739 61299
AVJ51818.1 MG948468_p63 hypothetical protein singleton unknown function unknown function -1 48309 48698
AVJ51762.1 MG948468_p7 hypothetical protein singleton unknown function unknown function 1 5881 6003
AVJ51816.1 MG948468_p61 primase phrog_3022 DNA primase DNA, RNA and nucleotide metabolism -1 45645 47987
AVJ51809.1 MG948468_p54 endonuclease phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 43666 44121
AVJ51761.1 MG948468_p6 major capsid protein phrog_247 major head protein head and packaging 1 4741 5832
AVJ51795.1 MG948468_p40 queuosine biosynthesis protein phrog_2076 QueE-like radical SAM domain moron, auxiliary metabolic gene and host takeover -1 32302 33060
AVJ51786.1 MG948468_p31 hypothetical protein singleton unknown function unknown function -1 27345 27560
AVJ51787.1 MG948468_p32 hypothetical protein singleton unknown function unknown function -1 27557 27823
AVJ51839.1 MG948468_p84 hypothetical protein singleton unknown function unknown function 1 55395 55595
AVJ51777.1 MG948468_p22 tail fiber protein phrog_31 central tail fiber J tail 1 18168 20891
AVJ51849.1 MG948468_p94 hypothetical protein phrog_289 GTP-binding domain other 1 58535 58903
AVJ51824.1 MG948468_p69 hypothetical protein singleton unknown function unknown function -1 50005 50193
AVJ51759.1 MG948468_p4 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 3679 4605
AVJ51846.1 MG948468_p91 hypothetical protein phrog_5486 unknown function unknown function 1 57480 57845
AVJ51807.1 MG948468_p52 DNA binding protein phrog_2480 unknown function unknown function -1 42346 42762
AVJ51756.1 MG948468_p1 terminase small subunit phrog_5334 terminase small subunit head and packaging 1 1 546
AVJ51770.1 MG948468_p15 major tail protein phrog_290 minor tail protein tail 1 11548 12480
AVJ51799.1 MG948468_p44 hypothetical protein singleton unknown function unknown function -1 35488 35862
AVJ51808.1 MG948468_p53 nucleotide pyrophosphohydrolase phrog_229 MazG-like pyrophosphatase other -1 42829 43656
AVJ51841.1 MG948468_p86 hypothetical protein singleton unknown function unknown function 1 56396 56587
AVJ51765.1 MG948468_p10 tail spike protein phrog_4250 EPS depolymerase tail 1 7122 9779
AVJ51796.1 MG948468_p41 VUT family protein phrog_4899 unknown function unknown function -1 33050 33688
AVJ51771.1 MG948468_p16 hypothetical protein phrog_569 tail length tape measure protein tail 1 12497 12937
AVJ51758.1 MG948468_p3 portal protein phrog_145 portal protein head and packaging 1 2131 3657
AVJ51790.1 MG948468_p35 GTP cyclohydrolase type I phrog_2197 GTP cyclohydrolase other -1 29083 29898
AVJ51773.1 MG948468_p18 tape measure protein phrog_339 tail length tape measure protein tail 1 13314 16577
AVJ51851.1 MG948468_p96 hypothetical protein singleton unknown function unknown function 1 59357 59647
AVJ51764.1 MG948468_p9 hypothetical protein singleton unknown function unknown function 1 6934 7107
AVJ51783.1 MG948468_p28 hypothetical protein singleton unknown function unknown function -1 23993 24313
AVJ51812.1 MG948468_p57 hypothetical protein singleton unknown function unknown function 1 44634 44888
AVJ51801.1 MG948468_p46 exonuclease phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism -1 37719 38654
AVJ51775.1 MG948468_p20 hypothetical protein phrog_2048 tail protein tail 1 17170 17757
AVJ51835.1 MG948468_p80 hypothetical protein singleton unknown function unknown function 1 53984 54544
AVJ51826.1 MG948468_p71 hypothetical protein singleton unknown function unknown function -1 50589 50828
AVJ51848.1 MG948468_p93 hypothetical protein phrog_4049 unknown function unknown function 1 58071 58538
AVJ51831.1 MG948468_p76 hypothetical protein singleton unknown function unknown function -1 52121 52498
AVJ51844.1 MG948468_p89 hypothetical protein singleton unknown function unknown function 1 56949 57188
AVJ51830.1 MG948468_p75 hypothetical protein singleton unknown function unknown function -1 51705 52124
AVJ51837.1 MG948468_p82 hypothetical protein singleton unknown function unknown function 1 54858 55085
AVJ51828.1 MG948468_p73 hypothetical protein singleton unknown function unknown function -1 51054 51266
AVJ51823.1 MG948468_p68 hypothetical protein singleton unknown function unknown function -1 49889 49993
AVJ51822.1 MG948468_p67 hypothetical protein singleton unknown function unknown function -1 49680 49889
AVJ51757.1 MG948468_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 533 2119
AVJ51814.1 MG948468_p59 hypothetical protein singleton unknown function unknown function -1 45192 45326
AVJ51785.1 MG948468_p30 DNA polymerase beta subunit phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 26399 27361
AVJ51792.1 MG948468_p37 hypothetical protein singleton unknown function unknown function -1 30440 30652
AVJ51850.1 MG948468_p95 hypothetical protein phrog_1040 peptidase HslV family other 1 58900 59379
AVJ51832.1 MG948468_p77 hypothetical protein singleton unknown function unknown function -1 52495 53154
AVJ51815.1 MG948468_p60 hypothetical protein singleton unknown function unknown function 1 45396 45617
AVJ51794.1 MG948468_p39 hypothetical protein singleton unknown function unknown function -1 32114 32305
AVJ51798.1 MG948468_p43 hypothetical protein phrog_7864 unknown function unknown function -1 34755 35486
AVJ51769.1 MG948468_p14 tail completion protein phrog_179 tail terminator connector 1 11072 11533
AVJ51767.1 MG948468_p12 head closure protein phrog_161 head closure Hc1 connector 1 10297 10674
AVJ51853.1 MG948468_p98 holin phrog_785 holin lysis 1 60363 60758
AVJ51843.1 MG948468_p88 hypothetical protein singleton unknown function unknown function 1 56747 56956
AVJ51829.1 MG948468_p74 hypothetical protein singleton unknown function unknown function -1 51259 51708
AVJ51766.1 MG948468_p11 adaptor phrog_477 head-tail adaptor Ad1 connector 1 9788 10297
AVJ51774.1 MG948468_p19 hypothetical protein phrog_1302 distal tail protein tail 1 16580 17170
AVJ51779.1 MG948468_p24 hypothetical protein singleton unknown function unknown function 1 21879 22097
AVJ51845.1 MG948468_p90 hypothetical protein singleton unknown function unknown function 1 57185 57487
AVJ51802.1 MG948468_p47 hypothetical protein singleton unknown function unknown function -1 38719 38949
AVJ51797.1 MG948468_p42 transcriptional activator phrog_11298 unknown function unknown function -1 33753 34640
AVJ51819.1 MG948468_p64 hypothetical protein singleton unknown function unknown function -1 48667 49050
AVJ51840.1 MG948468_p85 hypothetical protein singleton unknown function unknown function 1 55692 56396
AVJ51836.1 MG948468_p81 hypothetical protein singleton unknown function unknown function 1 54572 54814
AVJ51827.1 MG948468_p72 hypothetical protein singleton unknown function unknown function -1 50836 51057
AVJ51793.1 MG948468_p38 glutamine amidotransferase class-II phrog_10428 L-glutamine-D-fructose-6-phosphate aminotransferase other -1 30649 32112