| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG962361 |
Definition |
Mycobacterium phage Alexphander, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
NUCCORE |
Length |
57734 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
104 |
%GC |
61.16 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVO24488.1 | MG962361_p36 | membrane protein | phrog_404 | minor tail protein | tail | 1 | 29528 | 29902 |
| AVO24524.1 | MG962361_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48258 | 48650 |
| AVO24471.1 | MG962361_p19 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 17096 | 17926 |
| AVO24545.1 | MG962361_p101 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 55198 | 55359 |
| AVO24520.1 | MG962361_p74 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 46512 | 46661 |
| AVO24502.1 | MG962361_p55 | excise | phrog_1840 | excisionase | integration and excision | 1 | 37472 | 37738 |
| AVO24521.1 | MG962361_p75 | hypothetical protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 46658 | 47605 |
| AVO24539.1 | MG962361_p95 | hypothetical protein | phrog_8604 | unknown function | unknown function | 1 | 53183 | 53785 |
| AVO24466.1 | MG962361_p12 | major tail protein | phrog_476 | major tail protein | tail | 1 | 7463 | 8272 |
| AVO24491.1 | MG962361_p40 | membrane protein | phrog_1839 | unknown function | unknown function | 1 | 31268 | 31360 |
| AVO24457.1 | MG962361_p3 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 671 | 2158 |
| AVO24549.1 | MG962361_p50 | immunity repressor | phrog_3949 | transcriptional repressor | transcription regulation | -1 | 34944 | 35477 |
| AVO24532.1 | MG962361_p88 | hypothetical protein | phrog_2939 | unknown function | unknown function | 1 | 51365 | 51577 |
| AVO24537.1 | MG962361_p93 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 52252 | 52503 |
| AVO24470.1 | MG962361_p18 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 15332 | 17041 |
| AVO24462.1 | MG962361_p8 | head-to-tail connector complex protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 5928 | 6299 |
| AVO24530.1 | MG962361_p86 | hypothetical protein | phrog_14412 | unknown function | unknown function | 1 | 50648 | 51148 |
| AVO24507.1 | MG962361_p60 | membrane protein | phrog_658 | unknown function | unknown function | 1 | 39102 | 39449 |
| AVO24482.1 | MG962361_p30 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 26399 | 26551 |
| AVO24527.1 | MG962361_p83 | hypothetical protein | phrog_3647 | unknown function | unknown function | 1 | 49782 | 49943 |
| AVO24496.1 | MG962361_p46 | RelE-like toxin | phrog_1213 | RelE-like toxin | moron, auxiliary metabolic gene and host takeover | 1 | 33659 | 33970 |
| AVO24518.1 | MG962361_p72 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45374 | 45670 |
| AVO24515.1 | MG962361_p68 | hypothetical protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 41707 | 42285 |
| AVO24499.1 | MG962361_p52 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 35997 | 36857 |
| AVO24490.1 | MG962361_p38 | exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 30146 | 30967 |
| AVO24465.1 | MG962361_p11 | head-to-tail connector complex protein | phrog_813 | head-tail adaptor | connector | 1 | 6948 | 7352 |
| AVO24476.1 | MG962361_p24 | minor tail protein | phrog_2005 | minor tail protein | tail | 1 | 23888 | 24142 |
| AVO24456.1 | MG962361_p2 | terminase small subunit | phrog_4479 | terminase small subunit | head and packaging | 1 | 445 | 699 |
| AVO24534.1 | MG962361_p90 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 51762 | 51941 |
| AVO24503.1 | MG962361_p56 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 37735 | 37926 |
| AVO24525.1 | MG962361_p79 | hypothetical protein | phrog_5892 | unknown function | unknown function | 1 | 48647 | 48805 |
| AVO24473.1 | MG962361_p21 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 20457 | 22343 |
| AVO24543.1 | MG962361_p99 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 54553 | 54966 |
| AVO24498.1 | MG962361_p48 | membrane protein | phrog_1948 | unknown function | unknown function | -1 | 34226 | 34681 |
| AVO24478.1 | MG962361_p26 | minor tail protein | phrog_754 | minor tail protein | tail | 1 | 24790 | 25614 |
| AVO24528.1 | MG962361_p84 | hypothetical protein | phrog_19489 | unknown function | unknown function | 1 | 49940 | 50182 |
| AVO24522.1 | MG962361_p76 | hypothetical protein | phrog_4296 | unknown function | unknown function | 1 | 47602 | 47961 |
| AVO24504.1 | MG962361_p57 | membrane protein | phrog_3381 | unknown function | unknown function | 1 | 37923 | 38099 |
| AVO24519.1 | MG962361_p73 | hypothetical protein | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 45667 | 46515 |
| AVO24544.1 | MG962361_p100 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 54963 | 55205 |
| AVO24552.1 | MG962361_p80 | MPME 1 protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 48851 | 49222 |
| AVO24467.1 | MG962361_p14 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8386 | 8937 |
| AVO24474.1 | MG962361_p22 | minor tail protein | phrog_2106 | minor tail protein | tail | 1 | 22340 | 23506 |
| AVO24497.1 | MG962361_p47 | RelB-like antitoxin | phrog_2268 | antitoxin from a toxin-antitoxin system | moron, auxiliary metabolic gene and host takeover | 1 | 33967 | 34215 |
| AVO24541.1 | MG962361_p97 | hypothetical protein | phrog_6481 | unknown function | unknown function | 1 | 54150 | 54359 |
| AVO24508.1 | MG962361_p61 | WhiB family transcription factor | phrog_1333 | unknown function | unknown function | 1 | 39449 | 39943 |
| AVO24556.1 | MG962361_p81 | hypothetical protein | phrog_24183 | unknown function | unknown function | 1 | 49209 | 49616 |
| AVO24523.1 | MG962361_p77 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 47954 | 48178 |
| AVO24535.1 | MG962361_p91 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 51938 | 52078 |
| AVO24558.1 | MG962361_p43 | hypothetical protein | phrog_3693 | unknown function | unknown function | -1 | 31771 | 31893 |
| AVO24555.1 | MG962361_p39 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 31054 | 31275 |
| AVO24481.1 | MG962361_p29 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 26256 | 26402 |
| AVO24533.1 | MG962361_p89 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 51574 | 51765 |
| AVO24480.1 | MG962361_p28 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25965 | 26249 |
| AVO24509.1 | MG962361_p62 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 39940 | 40425 |
| AVO24514.1 | MG962361_p67 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 41450 | 41710 |
| AVO24494.1 | MG962361_p44 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 31893 | 32015 |
| AVO24463.1 | MG962361_p9 | head-to-tail connector complex protein | phrog_763 | head-tail adaptor | connector | 1 | 6296 | 6625 |
| AVO24505.1 | MG962361_p58 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 38096 | 38746 |
| AVO24548.1 | MG962361_p49 | hypothetical protein | phrog_7613 | unknown function | unknown function | -1 | 34795 | 34941 |
| AVO24511.1 | MG962361_p64 | helix-turn-helix DNA binding domain protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 40703 | 41068 |
| AVO24510.1 | MG962361_p63 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 40422 | 40706 |
| AVO24469.1 | MG962361_p17 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13539 | 15248 |
| AVO24477.1 | MG962361_p25 | minor tail protein | phrog_2012 | minor tail protein | tail | 1 | 24155 | 24793 |
| AVO24489.1 | MG962361_p37 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29899 | 30159 |
| AVO24459.1 | MG962361_p5 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 3604 | 4329 |
| AVO24479.1 | MG962361_p27 | helix-turn-helix DNA binding domain protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25619 | 25816 |
| AVO24501.1 | MG962361_p54 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 37150 | 37365 |
| AVO24531.1 | MG962361_p87 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | 1 | 51145 | 51312 |
| AVO24472.1 | MG962361_p20 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 17923 | 20460 |
| AVO24506.1 | MG962361_p59 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 38824 | 39105 |
| AVO24529.1 | MG962361_p85 | hypothetical protein | phrog_2142 | unknown function | unknown function | 1 | 50319 | 50651 |
| AVO24536.1 | MG962361_p92 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 52137 | 52259 |
| AVO24455.1 | MG962361_p1 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41 | 373 |
| AVO24486.1 | MG962361_p34 | lysin B | phrog_102 | endolysin | lysis | 1 | 28281 | 29282 |
| AVO24540.1 | MG962361_p96 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 53976 | 54143 |
| AVO24492.1 | MG962361_p41 | hypothetical protein | phrog_10622 | unknown function | unknown function | -1 | 31429 | 31575 |
| AVO24512.1 | MG962361_p65 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 41068 | 41223 |
| AVO24458.1 | MG962361_p4 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2199 | 3620 |
| AVO24517.1 | MG962361_p71 | hypothetical protein | phrog_10510 | unknown function | unknown function | 1 | 45177 | 45377 |
| AVO24485.1 | MG962361_p33 | lysin A | phrog_700 | endolysin | lysis | 1 | 27007 | 28281 |
| AVO24551.1 | MG962361_p69 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42282 | 42644 |
| AVO24513.1 | MG962361_p66 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 41223 | 41453 |
| AVO24493.1 | MG962361_p42 | membrane protein | phrog_7480 | unknown function | unknown function | -1 | 31568 | 31774 |
| AVO24495.1 | MG962361_p45 | integrase | phrog_1 | integrase | integration and excision | 1 | 32418 | 33536 |
| AVO24460.1 | MG962361_p6 | scaffolding protein | phrog_4638 | head scaffolding protein | head and packaging | 1 | 4408 | 4944 |
| AVO24475.1 | MG962361_p23 | minor tail protein | phrog_240 | head protein | head and packaging | 1 | 23524 | 23865 |
| AVO24487.1 | MG962361_p35 | holin | phrog_443 | holin | lysis | 1 | 29298 | 29531 |
| AVO24468.1 | MG962361_p16 | tapemeasure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9879 | 13538 |
| AVO24483.1 | MG962361_p31 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26619 | 26840 |
| AVO24526.1 | MG962361_p82 | hypothetical protein | phrog_15751 | unknown function | unknown function | 1 | 49609 | 49785 |
| AVO24542.1 | MG962361_p98 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 54359 | 54556 |
| AVO24461.1 | MG962361_p7 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 5007 | 5915 |
| AVO24538.1 | MG962361_p94 | MerR-like HTH DNA binding protein | phrog_908 | unknown function | unknown function | 1 | 52500 | 53186 |
| AVO24500.1 | MG962361_p53 | hypothetical protein | phrog_5253 | unknown function | unknown function | 1 | 36854 | 37153 |
| AVO24516.1 | MG962361_p70 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 42641 | 45160 |
| AVO24550.1 | MG962361_p51 | CRO protein | phrog_6267 | transcriptional repressor | transcription regulation | 1 | 35631 | 35936 |
| AVO24546.1 | MG962361_p102 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 55386 | 56825 |
| AVO24484.1 | MG962361_p32 | hypothetical protein | phrog_5492 | unknown function | unknown function | 1 | 26837 | 27010 |
| AVO24547.1 | MG962361_p104 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 57031 | 57642 |
| AVO24553.1 | MG962361_p13 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8386 | 9322 |
| AVO24557.1 | MG962361_p103 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 56822 | 57034 |
| AVO24554.1 | MG962361_p15 | HNH endonuclease | phrog_3593 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9340 | 9879 |
| AVO24464.1 | MG962361_p10 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6632 | 6958 |