| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG962376 |
Definition |
Mycobacterium phage Thumb, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
68408 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
57.5 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVO25989.1 | MG962376_p9 | hypothetical protein | phrog_16007 | unknown function | unknown function | 1 | 6443 | 6739 |
| AVO26061.1 | MG962376_p85 | hypothetical protein | phrog_15815 | unknown function | unknown function | 1 | 61370 | 61945 |
| AVO26007.1 | MG962376_p29 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 25682 | 28525 |
| AVO26071.1 | MG962376_p5 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 3872 | 5485 |
| AVO26010.1 | MG962376_p32 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 30709 | 31116 |
| AVO26057.1 | MG962376_p81 | hypothetical protein | phrog_16155 | unknown function | unknown function | 1 | 60231 | 60482 |
| AVO26032.1 | MG962376_p55 | hypothetical protein | phrog_5326 | unknown function | unknown function | 1 | 44032 | 44208 |
| AVO26046.1 | MG962376_p69 | hypothetical protein | phrog_21624 | unknown function | unknown function | 1 | 51401 | 51715 |
| AVO26043.1 | MG962376_p66 | hypothetical protein | phrog_18821 | unknown function | unknown function | 1 | 49646 | 49774 |
| AVO26052.1 | MG962376_p75 | hypothetical protein | phrog_15802 | unknown function | unknown function | 1 | 54574 | 54801 |
| AVO26006.1 | MG962376_p28 | minor tail protein | phrog_1885 | minor tail protein | tail | 1 | 24054 | 25682 |
| AVO26077.1 | MG962376_p78 | DNA polymerase III alpha | phrog_405 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 55518 | 58814 |
| AVO26003.1 | MG962376_p25 | tail assembly chaperone | phrog_6778 | tail assembly chaperone | tail | 1 | 15866 | 16216 |
| AVO26072.1 | MG962376_p6 | hypothetical protein | phrog_25887 | unknown function | unknown function | 1 | 5485 | 5655 |
| AVO26068.1 | MG962376_p92 | hypothetical protein | phrog_18975 | unknown function | unknown function | 1 | 64314 | 64688 |
| AVO25990.1 | MG962376_p10 | capsid maturation protease | phrog_12708 | head maturation protease | head and packaging | 1 | 6736 | 7509 |
| AVO26050.1 | MG962376_p73 | AAA-ATPase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 52573 | 53652 |
| AVO25993.1 | MG962376_p13 | hypothetical protein | phrog_4866 | head scaffolding protein | head and packaging | 1 | 8914 | 9675 |
| AVO26076.1 | MG962376_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35548 | 35808 |
| AVO26017.1 | MG962376_p39 | hypothetical protein | phrog_10981 | unknown function | unknown function | 1 | 35086 | 35448 |
| AVO25998.1 | MG962376_p20 | hypothetical protein | phrog_4995 | unknown function | unknown function | 1 | 13361 | 13819 |
| AVO25985.1 | MG962376_p2 | hypothetical protein | phrog_10899 | terminase small subunit | head and packaging | 1 | 355 | 1668 |
| AVO26020.1 | MG962376_p43 | hypothetical protein | phrog_16702 | unknown function | unknown function | 1 | 38113 | 38472 |
| AVO26058.1 | MG962376_p82 | membrane protein | phrog_19237 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 60479 | 60775 |
| AVO26009.1 | MG962376_p31 | minor tail protein | phrog_553 | minor tail protein | tail | 1 | 29730 | 30695 |
| AVO26030.1 | MG962376_p53 | hypothetical protein | phrog_18114 | unknown function | unknown function | 1 | 42138 | 42572 |
| AVO26070.1 | MG962376_p94 | hypothetical protein | phrog_26497 | polymerase | DNA, RNA and nucleotide metabolism | 1 | 67611 | 67841 |
| AVO26014.1 | MG962376_p36 | membrane protein | phrog_1298 | minor tail protein | tail | 1 | 32873 | 33352 |
| AVO26056.1 | MG962376_p80 | hypothetical protein | phrog_1981 | unknown function | unknown function | 1 | 59431 | 60135 |
| AVO26028.1 | MG962376_p51 | hypothetical protein | phrog_16414 | unknown function | unknown function | 1 | 41448 | 41774 |
| AVO26036.1 | MG962376_p59 | hypothetical protein | phrog_14477 | helicase | DNA, RNA and nucleotide metabolism | 1 | 44948 | 45178 |
| AVO25995.1 | MG962376_p15 | major capsid protein | phrog_3990 | major head protein | head and packaging | 1 | 10336 | 11559 |
| AVO26027.1 | MG962376_p50 | hypothetical protein | phrog_17421 | unknown function | unknown function | 1 | 40924 | 41310 |
| AVO26066.1 | MG962376_p90 | hypothetical protein | phrog_18727 | unknown function | unknown function | 1 | 63695 | 64042 |
| AVO25994.1 | MG962376_p14 | hypothetical protein | phrog_5042 | unknown function | unknown function | 1 | 9779 | 10285 |
| AVO26012.1 | MG962376_p34 | lysin A | phrog_1512 | endolysin | lysis | 1 | 31403 | 32368 |
| AVO26054.1 | MG962376_p77 | hypothetical protein | phrog_1342 | unknown function | unknown function | 1 | 55088 | 55489 |
| AVO26065.1 | MG962376_p89 | hypothetical protein | phrog_17566 | unknown function | unknown function | 1 | 63273 | 63677 |
| AVO26062.1 | MG962376_p86 | hypothetical protein | phrog_3848 | unknown function | unknown function | 1 | 61951 | 62319 |
| AVO26049.1 | MG962376_p72 | membrane protein | phrog_549 | unknown function | unknown function | 1 | 52173 | 52541 |
| AVO26055.1 | MG962376_p79 | hypothetical protein | phrog_17115 | unknown function | unknown function | 1 | 58826 | 59434 |
| AVO26048.1 | MG962376_p71 | membrane protein | phrog_20994 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 51867 | 52130 |
| AVO25984.1 | MG962376_p1 | hypothetical protein | phrog_5460 | unknown function | unknown function | 1 | 1 | 348 |
| AVO26008.1 | MG962376_p30 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 28525 | 29733 |
| AVO26022.1 | MG962376_p45 | hypothetical protein | phrog_12994 | unknown function | unknown function | 1 | 38998 | 39276 |
| AVO26039.1 | MG962376_p62 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 46085 | 48142 |
| AVO26001.1 | MG962376_p23 | major tail protein | phrog_4971 | major tail protein | tail | 1 | 14426 | 15274 |
| AVO26013.1 | MG962376_p35 | holin | phrog_565 | holin | lysis | 1 | 32380 | 32841 |
| AVO26073.1 | MG962376_p7 | hypothetical protein | phrog_1375 | unknown function | unknown function | 1 | 5717 | 5917 |
| AVO25986.1 | MG962376_p3 | hypothetical protein | phrog_12672 | unknown function | unknown function | 1 | 1682 | 1930 |
| AVO26044.1 | MG962376_p67 | hypothetical protein | phrog_18085 | unknown function | unknown function | 1 | 49771 | 50118 |
| AVO26069.1 | MG962376_p93 | DNA primase/polymerase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 64678 | 67614 |
| AVO26002.1 | MG962376_p24 | tail assembly chaperone | phrog_4336 | tail assembly chaperone | tail | 1 | 15370 | 15915 |
| AVO26033.1 | MG962376_p56 | membrane protein | phrog_19761 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 44205 | 44405 |
| AVO26024.1 | MG962376_p47 | hypothetical protein | phrog_21012 | unknown function | unknown function | 1 | 39854 | 40039 |
| AVO26059.1 | MG962376_p83 | hypothetical protein | phrog_17654 | unknown function | unknown function | 1 | 60772 | 61101 |
| AVO26040.1 | MG962376_p63 | hypothetical protein | phrog_13855 | unknown function | unknown function | 1 | 48139 | 48408 |
| AVO26005.1 | MG962376_p27 | minor tail protein | phrog_7161 | minor tail protein | tail | 1 | 22555 | 24057 |
| AVO26025.1 | MG962376_p48 | hypothetical protein | phrog_1587 | unknown function | unknown function | 1 | 40133 | 40468 |
| AVO26016.1 | MG962376_p38 | lysin B | phrog_102 | endolysin | lysis | 1 | 33835 | 35076 |
| AVO26018.1 | MG962376_p41 | hypothetical protein | phrog_636 | unknown function | unknown function | 1 | 37003 | 37635 |
| AVO26031.1 | MG962376_p54 | hypothetical protein | phrog_1221 | unknown function | unknown function | 1 | 42720 | 43931 |
| AVO26051.1 | MG962376_p74 | hypothetical protein | phrog_12070 | unknown function | unknown function | 1 | 53733 | 54350 |
| AVO26021.1 | MG962376_p44 | hypothetical protein | phrog_19599 | unknown function | unknown function | 1 | 38618 | 39001 |
| AVO26038.1 | MG962376_p61 | hypothetical protein | phrog_5307 | unknown function | unknown function | 1 | 45491 | 46057 |
| AVO26015.1 | MG962376_p37 | membrane domain protein | phrog_726 | unknown function | unknown function | 1 | 33336 | 33851 |
| AVO25996.1 | MG962376_p16 | hypothetical protein | phrog_5318 | unknown function | unknown function | 1 | 11629 | 12240 |
| AVO25999.1 | MG962376_p21 | hypothetical protein | phrog_12447 | unknown function | unknown function | 1 | 13867 | 14193 |
| AVO26045.1 | MG962376_p68 | exonuclease | phrog_1218 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 50115 | 51404 |
| AVO26004.1 | MG962376_p26 | tapemeasure protein | phrog_6435 | tail length tape measure protein | tail | 1 | 16235 | 22558 |
| AVO26075.1 | MG962376_p19 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 13002 | 13364 |
| AVO25997.1 | MG962376_p18 | hypothetical protein | phrog_4904 | unknown function | unknown function | 1 | 12626 | 13009 |
| AVO26067.1 | MG962376_p91 | hypothetical protein | phrog_30302 | unknown function | unknown function | 1 | 64234 | 64359 |
| AVO26042.1 | MG962376_p65 | hypothetical protein | phrog_12020 | unknown function | unknown function | 1 | 48923 | 49468 |
| AVO26037.1 | MG962376_p60 | hypothetical protein | phrog_12472 | unknown function | unknown function | 1 | 45183 | 45494 |
| AVO26026.1 | MG962376_p49 | hypothetical protein | phrog_21085 | unknown function | unknown function | 1 | 40471 | 40827 |
| AVO26041.1 | MG962376_p64 | membrane protein | phrog_17402 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 48405 | 48776 |
| AVO25991.1 | MG962376_p11 | peptidase | phrog_5556 | tail protein | tail | 1 | 7513 | 7971 |
| AVO26019.1 | MG962376_p42 | hypothetical protein | phrog_8253 | unknown function | unknown function | 1 | 37751 | 38020 |
| AVO26011.1 | MG962376_p33 | hypothetical protein | phrog_12784 | unknown function | unknown function | 1 | 31133 | 31333 |
| AVO26023.1 | MG962376_p46 | hypothetical protein | phrog_19432 | unknown function | unknown function | 1 | 39374 | 39769 |
| AVO25988.1 | MG962376_p8 | membrane protein | phrog_19343 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 6111 | 6443 |
| AVO26060.1 | MG962376_p84 | hypothetical protein | phrog_14975 | unknown function | unknown function | 1 | 61098 | 61373 |
| AVO26000.1 | MG962376_p22 | hypothetical protein | phrog_5278 | unknown function | unknown function | 1 | 14213 | 14410 |
| AVO26053.1 | MG962376_p76 | hypothetical protein | phrog_15225 | unknown function | unknown function | 1 | 54798 | 55091 |
| AVO26064.1 | MG962376_p88 | hypothetical protein | phrog_17433 | unknown function | unknown function | 1 | 62971 | 63276 |
| AVO26034.1 | MG962376_p57 | hypothetical protein | phrog_7933 | unknown function | unknown function | 1 | 44402 | 44632 |
| AVO26047.1 | MG962376_p70 | hypothetical protein | phrog_19475 | unknown function | unknown function | 1 | 51712 | 51870 |
| AVO26035.1 | MG962376_p58 | membrane protein | phrog_36341 | unknown function | unknown function | 1 | 44823 | 44963 |
| AVO26029.1 | MG962376_p52 | hypothetical protein | phrog_17169 | unknown function | unknown function | 1 | 41812 | 42135 |
| AVO25992.1 | MG962376_p12 | minor capsid protein | phrog_115 | minor head protein | head and packaging | 1 | 7968 | 8888 |
| AVO25987.1 | MG962376_p4 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 2133 | 3842 |
| AVO26063.1 | MG962376_p87 | hypothetical protein | phrog_16806 | unknown function | unknown function | 1 | 62321 | 62986 |
| AVO26074.1 | MG962376_p17 | hypothetical protein | phrog_5274 | unknown function | unknown function | 1 | 12253 | 12624 |