Genomic map of Escherichia phage PDX (MG963916)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG963916
Definition
Escherichia phage PDX, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Vequintavirinae; Vequintavirus; unclassified Vequintavirus.
DB of origin
NUCCORE
Length
138427
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
10
%GC
43.54
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AVJ51863.1 MG963916_p9 sheath protein phrog_205 tail sheath tail 1 108377 109753
AVJ51864.1 MG963916_p1 tail fiber protein phrog_4549 tail fiber protein tail 1 1220 2965
AVJ51860.1 MG963916_p6 lysozyme phrog_90 endolysin lysis -1 86860 87330
AVJ51856.1 MG963916_p3 hypothetical protein phrog_11241 unknown function unknown function 1 46024 46284
AVJ51855.1 MG963916_p4 hypothetical protein phrog_5162 unknown function unknown function 1 46359 46982
AVJ51862.1 MG963916_p8 major capsid protein phrog_29 major head protein head and packaging 1 104180 105184
AVJ51857.1 MG963916_p2 hypothetical protein phrog_4477 unknown function unknown function 1 37012 38238
AVJ51859.1 MG963916_p7 DNA endonuclease I phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 98950 99645
AVJ51861.1 MG963916_p5 ribonucleoside-diphosphate reductase large subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 74659 76758
AVJ51858.1 MG963916_p10 endo-N-acetylneuraminidase phrog_6578 tail fiber protein tail 1 122505 126323