Genomic map of Xanthomonas phage RiverRider (MG983743)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MG983743
Definition
Xanthomonas phage RiverRider, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae.
DB of origin
NUCCORE
Length
76335
Host Name
Xanthomonas fragariae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
90
%GC
49.39
Number of singletons
35
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AVO23154.1 MG983743_p25 hypothetical protein phrog_2220 unknown function unknown function 1 18573 21251
AVO23134.1 MG983743_p45 rLLB lysis inhibitor phrog_2886 RIIB lysis inhibitor lysis -1 49143 51155
AVO23174.1 MG983743_p5 hypothetical protein phrog_3934 unknown function unknown function 1 1915 2376
AVO23175.1 MG983743_p4 hypothetical protein phrog_1048 unknown function unknown function 1 1589 1897
AVO23135.1 MG983743_p44 hypothetical protein phrog_6377 unknown function unknown function -1 48717 49076
AVO23131.1 MG983743_p48 thymidilate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 53980 54876
AVO23104.1 MG983743_p75 hypothetical protein singleton unknown function unknown function -1 71153 71419
AVO23139.1 MG983743_p40 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 43797 46433
AVO23147.1 MG983743_p32 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 36114 36863
AVO23093.1 MG983743_p86 hypothetical protein singleton unknown function unknown function -1 74819 75040
AVO23125.1 MG983743_p54 hypothetical protein phrog_2018 unknown function unknown function -1 58745 59155
AVO23150.1 MG983743_p29 hypothetical protein singleton unknown function unknown function -1 34283 34762
AVO23142.1 MG983743_p37 hypothetical protein singleton unknown function unknown function -1 40728 41075
AVO23095.1 MG983743_p84 hypothetical protein singleton unknown function unknown function -1 74478 74672
AVO23115.1 MG983743_p64 HNH endonuclease phrog_1872 endonuclease DNA, RNA and nucleotide metabolism -1 66081 66425
AVO23126.1 MG983743_p53 hypothetical protein singleton unknown function unknown function -1 55698 56030
AVO23106.1 MG983743_p73 RNA polymerase 1 phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism -1 70137 70961
AVO23152.1 MG983743_p27 hypothetical protein phrog_6126 virion structural protein head and packaging 1 21776 23815
AVO23170.1 MG983743_p9 hypothetical protein phrog_2125 virion structural protein head and packaging 1 4895 5593
AVO23177.1 MG983743_p2 hypothetical protein singleton unknown function unknown function 1 1221 1376
AVO23098.1 MG983743_p81 hypothetical protein singleton unknown function unknown function -1 73182 73580
AVO23138.1 MG983743_p41 hypothetical protein phrog_4881 unknown function unknown function -1 46442 46969
AVO23109.1 MG983743_p70 RNA polymerase 2 phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism -1 68446 69672
AVO23146.1 MG983743_p33 hypothetical protein singleton unknown function unknown function -1 36935 37246
AVO23124.1 MG983743_p55 hypothetical protein phrog_1735 unknown function unknown function -1 59165 61174
AVO23140.1 MG983743_p39 hypothetical protein phrog_1627 unknown function unknown function -1 43432 43776
AVO23113.1 MG983743_p66 hypothetical protein singleton unknown function unknown function -1 66728 66907
AVO23112.1 MG983743_p67 hypothetical protein singleton unknown function unknown function 1 66959 67255
AVO23110.1 MG983743_p69 hypothetical protein singleton unknown function unknown function -1 67958 68386
AVO23094.1 MG983743_p85 hypothetical protein singleton unknown function unknown function -1 74665 74817
AVO23176.1 MG983743_p3 hypothetical protein singleton unknown function unknown function 1 1390 1578
AVO23132.1 MG983743_p47 hypothetical protein singleton unknown function unknown function -1 53653 53847
AVO23127.1 MG983743_p52 hypothetical protein singleton unknown function unknown function -1 55487 55708
AVO23161.1 MG983743_p18 Rz/Rxl spanin protein phrog_6197 Rz-like spanin lysis 1 11399 11929
AVO23120.1 MG983743_p59 hypothetical protein singleton unknown function unknown function -1 62926 63294
AVO23133.1 MG983743_p46 rIIA lysis inhibitor phrog_2979 RIIA lysis inhibitor lysis -1 51158 53575
AVO23166.1 MG983743_p13 tail fiber protein phrog_4176 tail fiber protein tail 1 8634 9602
AVO23111.1 MG983743_p68 capsid decoration protein phrog_215 structural protein with Ig domain head and packaging -1 67346 67888
AVO23116.1 MG983743_p63 hypothetical protein singleton unknown function unknown function -1 65869 66084
AVO23159.1 MG983743_p20 hypothetical protein phrog_2346 unknown function unknown function 1 14159 14515
AVO23103.1 MG983743_p76 hypothetical protein phrog_2072 unknown function unknown function -1 71346 71750
AVO23107.1 MG983743_p72 hypothetical protein singleton unknown function unknown function -1 69903 70133
AVO23128.1 MG983743_p51 hypothetical protein singleton unknown function unknown function -1 55220 55420
AVO23089.1 MG983743_p90 hypothetical protein phrog_5020 unknown function unknown function -1 75882 76202
AVO23137.1 MG983743_p42 DNA helicase phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism -1 46973 48277
AVO23129.1 MG983743_p50 hypothetical protein singleton unknown function unknown function -1 54993 55223
AVO23165.1 MG983743_p14 tail fiber protein phrog_4950 tail fiber protein tail 1 9599 10165
AVO23151.1 MG983743_p28 virion RNA polymerase phrog_2206 virion RNA polymerase DNA, RNA and nucleotide metabolism 1 23902 34230
AVO23136.1 MG983743_p43 NTP pyrophosphohydrolase phrog_671 nucleotide pyrophosphohydrolase other -1 48335 48790
AVO23091.1 MG983743_p88 hypothetical protein singleton unknown function unknown function -1 75289 75495
AVO23117.1 MG983743_p62 hypothetical protein singleton unknown function unknown function -1 65510 65872
AVO23171.1 MG983743_p8 terminase phrog_38 terminase large subunit head and packaging 1 3297 4889
AVO23143.1 MG983743_p36 hypothetical protein phrog_474 phosphofructokinase other -1 40447 40728
AVO23155.1 MG983743_p24 hypothetical protein phrog_2050 virion structural protein head and packaging 1 17734 18573
AVO23114.1 MG983743_p65 hypothetical protein singleton unknown function unknown function -1 66422 66718
AVO23168.1 MG983743_p11 hypothetical protein singleton unknown function unknown function 1 5987 7438
AVO23169.1 MG983743_p10 hypothetical protein singleton unknown function unknown function 1 5593 6003
AVO23121.1 MG983743_p58 deoxycytidine deaminase phrog_1663 dCTP deaminase DNA, RNA and nucleotide metabolism -1 62427 62918
AVO23100.1 MG983743_p79 hypothetical protein phrog_768 DprA-like DNA recombination-mediator protein DNA, RNA and nucleotide metabolism -1 72462 72998
AVO23108.1 MG983743_p71 hypothetical protein singleton unknown function unknown function -1 69710 69901
AVO23145.1 MG983743_p34 DNA primase phrog_2135 DNA primase DNA, RNA and nucleotide metabolism -1 37249 39405
AVO23172.1 MG983743_p7 hypothetical protein phrog_2109 unknown function unknown function 1 2621 3310
AVO23173.1 MG983743_p6 hypothetical protein phrog_32645 unknown function unknown function 1 2380 2619
AVO23157.1 MG983743_p22 major capsid protein phrog_1357 major head protein head and packaging 1 15724 16959
AVO23122.1 MG983743_p57 hypothetical protein phrog_19749 unknown function unknown function -1 62024 62272
AVO23119.1 MG983743_p60 hypothetical protein phrog_1314 HNH endonuclease DNA, RNA and nucleotide metabolism -1 63307 64464
AVO23160.1 MG983743_p19 portal protein phrog_1216 portal protein head and packaging 1 11931 14075
AVO23148.1 MG983743_p31 ssDNA binding protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 35329 36057
AVO23144.1 MG983743_p35 exonuclease phrog_2139 exonuclease DNA, RNA and nucleotide metabolism -1 39402 40388
AVO23123.1 MG983743_p56 hypothetical protein singleton unknown function unknown function -1 61446 61979
AVO23105.1 MG983743_p74 hypothetical protein singleton unknown function unknown function -1 70972 71160
AVO23178.1 MG983743_p1 hypothetical protein phrog_5020 unknown function unknown function -1 116 436
AVO23167.1 MG983743_p12 hypothetical protein phrog_12940 tail fiber protein tail 1 7435 8634
AVO23101.1 MG983743_p78 hypothetical protein singleton unknown function unknown function -1 72286 72465
AVO23096.1 MG983743_p83 hypothetical protein phrog_4099 unknown function unknown function -1 73891 74334
AVO23153.1 MG983743_p26 hypothetical protein phrog_16623 unknown function unknown function 1 21263 21766
AVO23090.1 MG983743_p89 hypothetical protein singleton unknown function unknown function -1 75515 75676
AVO23141.1 MG983743_p38 L-shaped tail fiber protein phrog_13286 tail protein tail -1 41151 43439
AVO23092.1 MG983743_p87 hypothetical protein singleton unknown function unknown function -1 75055 75273
AVO23149.1 MG983743_p30 holliday junction resolvase phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 34778 35329
AVO23097.1 MG983743_p82 hypothetical protein singleton unknown function unknown function -1 73709 73825
AVO23118.1 MG983743_p61 AAA-ATPase phrog_1297 ATPase other -1 64479 65531
AVO23162.1 MG983743_p17 N-acetylmuramidase phrog_315 endolysin lysis 1 10786 11421
AVO23156.1 MG983743_p23 hypothetical protein phrog_2130 unknown function unknown function 1 17029 17655
AVO23130.1 MG983743_p49 hypothetical protein singleton unknown function unknown function -1 54863 55000
AVO23163.1 MG983743_p16 holin phrog_1356 holin lysis 1 10575 10805
AVO23099.1 MG983743_p80 hypothetical protein singleton unknown function unknown function -1 72995 73198
AVO23164.1 MG983743_p15 hypothetical protein phrog_5211 unknown function unknown function 1 10264 10578
AVO23102.1 MG983743_p77 hypothetical protein phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism -1 71747 72238
AVO23158.1 MG983743_p21 tape measure protein phrog_2120 tail length tape measure protein tail 1 14521 15708