| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MG983743 |
Definition |
Xanthomonas phage RiverRider, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae. |
DB of origin |
NUCCORE |
Length |
76335 |
Host Name |
Xanthomonas fragariae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
90 |
%GC |
49.39 |
Number of singletons |
35 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVO23154.1 | MG983743_p25 | hypothetical protein | phrog_2220 | unknown function | unknown function | 1 | 18573 | 21251 |
| AVO23134.1 | MG983743_p45 | rLLB lysis inhibitor | phrog_2886 | RIIB lysis inhibitor | lysis | -1 | 49143 | 51155 |
| AVO23174.1 | MG983743_p5 | hypothetical protein | phrog_3934 | unknown function | unknown function | 1 | 1915 | 2376 |
| AVO23175.1 | MG983743_p4 | hypothetical protein | phrog_1048 | unknown function | unknown function | 1 | 1589 | 1897 |
| AVO23135.1 | MG983743_p44 | hypothetical protein | phrog_6377 | unknown function | unknown function | -1 | 48717 | 49076 |
| AVO23131.1 | MG983743_p48 | thymidilate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 53980 | 54876 |
| AVO23104.1 | MG983743_p75 | hypothetical protein | singleton | unknown function | unknown function | -1 | 71153 | 71419 |
| AVO23139.1 | MG983743_p40 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 43797 | 46433 |
| AVO23147.1 | MG983743_p32 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 36114 | 36863 |
| AVO23093.1 | MG983743_p86 | hypothetical protein | singleton | unknown function | unknown function | -1 | 74819 | 75040 |
| AVO23125.1 | MG983743_p54 | hypothetical protein | phrog_2018 | unknown function | unknown function | -1 | 58745 | 59155 |
| AVO23150.1 | MG983743_p29 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34283 | 34762 |
| AVO23142.1 | MG983743_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40728 | 41075 |
| AVO23095.1 | MG983743_p84 | hypothetical protein | singleton | unknown function | unknown function | -1 | 74478 | 74672 |
| AVO23115.1 | MG983743_p64 | HNH endonuclease | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 66081 | 66425 |
| AVO23126.1 | MG983743_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 55698 | 56030 |
| AVO23106.1 | MG983743_p73 | RNA polymerase 1 | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 70137 | 70961 |
| AVO23152.1 | MG983743_p27 | hypothetical protein | phrog_6126 | virion structural protein | head and packaging | 1 | 21776 | 23815 |
| AVO23170.1 | MG983743_p9 | hypothetical protein | phrog_2125 | virion structural protein | head and packaging | 1 | 4895 | 5593 |
| AVO23177.1 | MG983743_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1221 | 1376 |
| AVO23098.1 | MG983743_p81 | hypothetical protein | singleton | unknown function | unknown function | -1 | 73182 | 73580 |
| AVO23138.1 | MG983743_p41 | hypothetical protein | phrog_4881 | unknown function | unknown function | -1 | 46442 | 46969 |
| AVO23109.1 | MG983743_p70 | RNA polymerase 2 | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 68446 | 69672 |
| AVO23146.1 | MG983743_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36935 | 37246 |
| AVO23124.1 | MG983743_p55 | hypothetical protein | phrog_1735 | unknown function | unknown function | -1 | 59165 | 61174 |
| AVO23140.1 | MG983743_p39 | hypothetical protein | phrog_1627 | unknown function | unknown function | -1 | 43432 | 43776 |
| AVO23113.1 | MG983743_p66 | hypothetical protein | singleton | unknown function | unknown function | -1 | 66728 | 66907 |
| AVO23112.1 | MG983743_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 66959 | 67255 |
| AVO23110.1 | MG983743_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67958 | 68386 |
| AVO23094.1 | MG983743_p85 | hypothetical protein | singleton | unknown function | unknown function | -1 | 74665 | 74817 |
| AVO23176.1 | MG983743_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1390 | 1578 |
| AVO23132.1 | MG983743_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53653 | 53847 |
| AVO23127.1 | MG983743_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 55487 | 55708 |
| AVO23161.1 | MG983743_p18 | Rz/Rxl spanin protein | phrog_6197 | Rz-like spanin | lysis | 1 | 11399 | 11929 |
| AVO23120.1 | MG983743_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 62926 | 63294 |
| AVO23133.1 | MG983743_p46 | rIIA lysis inhibitor | phrog_2979 | RIIA lysis inhibitor | lysis | -1 | 51158 | 53575 |
| AVO23166.1 | MG983743_p13 | tail fiber protein | phrog_4176 | tail fiber protein | tail | 1 | 8634 | 9602 |
| AVO23111.1 | MG983743_p68 | capsid decoration protein | phrog_215 | structural protein with Ig domain | head and packaging | -1 | 67346 | 67888 |
| AVO23116.1 | MG983743_p63 | hypothetical protein | singleton | unknown function | unknown function | -1 | 65869 | 66084 |
| AVO23159.1 | MG983743_p20 | hypothetical protein | phrog_2346 | unknown function | unknown function | 1 | 14159 | 14515 |
| AVO23103.1 | MG983743_p76 | hypothetical protein | phrog_2072 | unknown function | unknown function | -1 | 71346 | 71750 |
| AVO23107.1 | MG983743_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 69903 | 70133 |
| AVO23128.1 | MG983743_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 55220 | 55420 |
| AVO23089.1 | MG983743_p90 | hypothetical protein | phrog_5020 | unknown function | unknown function | -1 | 75882 | 76202 |
| AVO23137.1 | MG983743_p42 | DNA helicase | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | -1 | 46973 | 48277 |
| AVO23129.1 | MG983743_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54993 | 55223 |
| AVO23165.1 | MG983743_p14 | tail fiber protein | phrog_4950 | tail fiber protein | tail | 1 | 9599 | 10165 |
| AVO23151.1 | MG983743_p28 | virion RNA polymerase | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 23902 | 34230 |
| AVO23136.1 | MG983743_p43 | NTP pyrophosphohydrolase | phrog_671 | nucleotide pyrophosphohydrolase | other | -1 | 48335 | 48790 |
| AVO23091.1 | MG983743_p88 | hypothetical protein | singleton | unknown function | unknown function | -1 | 75289 | 75495 |
| AVO23117.1 | MG983743_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 65510 | 65872 |
| AVO23171.1 | MG983743_p8 | terminase | phrog_38 | terminase large subunit | head and packaging | 1 | 3297 | 4889 |
| AVO23143.1 | MG983743_p36 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 40447 | 40728 |
| AVO23155.1 | MG983743_p24 | hypothetical protein | phrog_2050 | virion structural protein | head and packaging | 1 | 17734 | 18573 |
| AVO23114.1 | MG983743_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 66422 | 66718 |
| AVO23168.1 | MG983743_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5987 | 7438 |
| AVO23169.1 | MG983743_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5593 | 6003 |
| AVO23121.1 | MG983743_p58 | deoxycytidine deaminase | phrog_1663 | dCTP deaminase | DNA, RNA and nucleotide metabolism | -1 | 62427 | 62918 |
| AVO23100.1 | MG983743_p79 | hypothetical protein | phrog_768 | DprA-like DNA recombination-mediator protein | DNA, RNA and nucleotide metabolism | -1 | 72462 | 72998 |
| AVO23108.1 | MG983743_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 69710 | 69901 |
| AVO23145.1 | MG983743_p34 | DNA primase | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37249 | 39405 |
| AVO23172.1 | MG983743_p7 | hypothetical protein | phrog_2109 | unknown function | unknown function | 1 | 2621 | 3310 |
| AVO23173.1 | MG983743_p6 | hypothetical protein | phrog_32645 | unknown function | unknown function | 1 | 2380 | 2619 |
| AVO23157.1 | MG983743_p22 | major capsid protein | phrog_1357 | major head protein | head and packaging | 1 | 15724 | 16959 |
| AVO23122.1 | MG983743_p57 | hypothetical protein | phrog_19749 | unknown function | unknown function | -1 | 62024 | 62272 |
| AVO23119.1 | MG983743_p60 | hypothetical protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 63307 | 64464 |
| AVO23160.1 | MG983743_p19 | portal protein | phrog_1216 | portal protein | head and packaging | 1 | 11931 | 14075 |
| AVO23148.1 | MG983743_p31 | ssDNA binding protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 35329 | 36057 |
| AVO23144.1 | MG983743_p35 | exonuclease | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 39402 | 40388 |
| AVO23123.1 | MG983743_p56 | hypothetical protein | singleton | unknown function | unknown function | -1 | 61446 | 61979 |
| AVO23105.1 | MG983743_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 70972 | 71160 |
| AVO23178.1 | MG983743_p1 | hypothetical protein | phrog_5020 | unknown function | unknown function | -1 | 116 | 436 |
| AVO23167.1 | MG983743_p12 | hypothetical protein | phrog_12940 | tail fiber protein | tail | 1 | 7435 | 8634 |
| AVO23101.1 | MG983743_p78 | hypothetical protein | singleton | unknown function | unknown function | -1 | 72286 | 72465 |
| AVO23096.1 | MG983743_p83 | hypothetical protein | phrog_4099 | unknown function | unknown function | -1 | 73891 | 74334 |
| AVO23153.1 | MG983743_p26 | hypothetical protein | phrog_16623 | unknown function | unknown function | 1 | 21263 | 21766 |
| AVO23090.1 | MG983743_p89 | hypothetical protein | singleton | unknown function | unknown function | -1 | 75515 | 75676 |
| AVO23141.1 | MG983743_p38 | L-shaped tail fiber protein | phrog_13286 | tail protein | tail | -1 | 41151 | 43439 |
| AVO23092.1 | MG983743_p87 | hypothetical protein | singleton | unknown function | unknown function | -1 | 75055 | 75273 |
| AVO23149.1 | MG983743_p30 | holliday junction resolvase | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 34778 | 35329 |
| AVO23097.1 | MG983743_p82 | hypothetical protein | singleton | unknown function | unknown function | -1 | 73709 | 73825 |
| AVO23118.1 | MG983743_p61 | AAA-ATPase | phrog_1297 | ATPase | other | -1 | 64479 | 65531 |
| AVO23162.1 | MG983743_p17 | N-acetylmuramidase | phrog_315 | endolysin | lysis | 1 | 10786 | 11421 |
| AVO23156.1 | MG983743_p23 | hypothetical protein | phrog_2130 | unknown function | unknown function | 1 | 17029 | 17655 |
| AVO23130.1 | MG983743_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54863 | 55000 |
| AVO23163.1 | MG983743_p16 | holin | phrog_1356 | holin | lysis | 1 | 10575 | 10805 |
| AVO23099.1 | MG983743_p80 | hypothetical protein | singleton | unknown function | unknown function | -1 | 72995 | 73198 |
| AVO23164.1 | MG983743_p15 | hypothetical protein | phrog_5211 | unknown function | unknown function | 1 | 10264 | 10578 |
| AVO23102.1 | MG983743_p77 | hypothetical protein | phrog_374 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 71747 | 72238 |
| AVO23158.1 | MG983743_p21 | tape measure protein | phrog_2120 | tail length tape measure protein | tail | 1 | 14521 | 15708 |