| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MH001454 |
Definition |
Gordonia phage Waits, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Soupsvirus; Gordonia virus Waits. |
DB of origin |
NUCCORE |
Length |
52856 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
98 |
%GC |
61.97 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVO22053.1 | MH001454_p19 | head-to-tail connector complex protein | phrog_320 | head closure Hc1 | connector | 1 | 13015 | 13383 |
| AVO22075.1 | MH001454_p42 | hypothetical protein | phrog_13791 | unknown function | unknown function | -1 | 27355 | 27579 |
| AVO22125.1 | MH001454_p95 | hypothetical protein | phrog_13636 | unknown function | unknown function | -1 | 50448 | 50630 |
| AVO22130.1 | MH001454_p52 | hypothetical protein | phrog_13800 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 32649 | 32762 |
| AVO22097.1 | MH001454_p65 | hypothetical protein | phrog_13497 | unknown function | unknown function | -1 | 38738 | 38917 |
| AVO22109.1 | MH001454_p79 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44575 | 44973 |
| AVO22040.1 | MH001454_p6 | tail protein | phrog_1126 | unknown function | unknown function | 1 | 3081 | 3416 |
| AVO22114.1 | MH001454_p84 | hypothetical protein | phrog_1006 | unknown function | unknown function | -1 | 46567 | 47034 |
| AVO22129.1 | MH001454_p39 | hypothetical protein | phrog_14604 | unknown function | unknown function | -1 | 26747 | 26881 |
| AVO22038.1 | MH001454_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2278 | 2574 |
| AVO22105.1 | MH001454_p75 | hypothetical protein | phrog_9751 | unknown function | unknown function | -1 | 43047 | 43220 |
| AVO22121.1 | MH001454_p91 | hypothetical protein | phrog_13953 | unknown function | unknown function | -1 | 48580 | 48981 |
| AVO22094.1 | MH001454_p62 | hypothetical protein | phrog_13334 | unknown function | unknown function | -1 | 37660 | 37872 |
| AVO22117.1 | MH001454_p87 | hypothetical protein | phrog_12613 | unknown function | unknown function | -1 | 47618 | 47788 |
| AVO22123.1 | MH001454_p93 | hypothetical protein | phrog_6351 | unknown function | unknown function | -1 | 49826 | 50212 |
| AVO22085.1 | MH001454_p53 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 32747 | 34804 |
| AVO22054.1 | MH001454_p20 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13383 | 13751 |
| AVO22044.1 | MH001454_p10 | holin | phrog_13682 | holin | lysis | 1 | 6410 | 6637 |
| AVO22063.1 | MH001454_p29 | minor tail protein | phrog_404 | minor tail protein | tail | 1 | 21375 | 21716 |
| AVO22131.1 | MH001454_p68 | hypothetical protein | phrog_13833 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 39991 | 40104 |
| AVO22041.1 | MH001454_p7 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 3413 | 4405 |
| AVO22061.1 | MH001454_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19063 | 20850 |
| AVO22115.1 | MH001454_p85 | hypothetical protein | phrog_12580 | unknown function | unknown function | -1 | 47149 | 47430 |
| AVO22052.1 | MH001454_p18 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 12831 | 13028 |
| AVO22086.1 | MH001454_p54 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 34801 | 34992 |
| AVO22127.1 | MH001454_p97 | hypothetical protein | phrog_7225 | unknown function | unknown function | -1 | 50867 | 51076 |
| AVO22055.1 | MH001454_p21 | head-to-tail connector complex protein | phrog_123 | tail terminator | connector | 1 | 13764 | 14174 |
| AVO22067.1 | MH001454_p33 | dsDNA partitioning protein | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 24649 | 25215 |
| AVO22110.1 | MH001454_p80 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44989 | 45510 |
| AVO22049.1 | MH001454_p15 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11262 | 12212 |
| AVO22039.1 | MH001454_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2610 | 3068 |
| AVO22120.1 | MH001454_p90 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 48222 | 48464 |
| AVO22132.1 | MH001454_p69 | hypothetical protein | phrog_14261 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 40101 | 40199 |
| AVO22071.1 | MH001454_p37 | hypothetical protein | phrog_980 | unknown function | unknown function | -1 | 26143 | 26373 |
| AVO22050.1 | MH001454_p16 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 12283 | 12453 |
| AVO22089.1 | MH001454_p57 | helix-turn-helix DNA binding protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35316 | 35888 |
| AVO22066.1 | MH001454_p32 | hypothetical protein | phrog_4480 | unknown function | unknown function | 1 | 23858 | 24166 |
| AVO22048.1 | MH001454_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10717 | 11229 |
| AVO22118.1 | MH001454_p88 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47800 | 47997 |
| AVO22112.1 | MH001454_p82 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46131 | 46310 |
| AVO22107.1 | MH001454_p77 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43422 | 43700 |
| AVO22128.1 | MH001454_p98 | hypothetical protein | phrog_13265 | unknown function | unknown function | -1 | 51080 | 51364 |
| AVO22082.1 | MH001454_p49 | hypothetical protein | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 30962 | 31687 |
| AVO22098.1 | MH001454_p66 | lysin B | phrog_6187 | unknown function | unknown function | -1 | 38917 | 39552 |
| AVO22058.1 | MH001454_p23 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 14915 | 15819 |
| AVO22078.1 | MH001454_p45 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 29832 | 30191 |
| AVO22124.1 | MH001454_p94 | hypothetical protein | phrog_14166 | unknown function | unknown function | -1 | 50215 | 50445 |
| AVO22042.1 | MH001454_p8 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 4402 | 5076 |
| AVO22037.1 | MH001454_p3 | hypothetical protein | phrog_4491 | unknown function | unknown function | 1 | 1982 | 2281 |
| AVO22070.1 | MH001454_p36 | hypothetical protein | phrog_11556 | unknown function | unknown function | 1 | 25780 | 25992 |
| AVO22072.1 | MH001454_p38 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 26373 | 26747 |
| AVO22079.1 | MH001454_p46 | HTH DNA binding protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30188 | 30481 |
| AVO22043.1 | MH001454_p9 | lysin A | phrog_2998 | endolysin | lysis | 1 | 5366 | 6400 |
| AVO22092.1 | MH001454_p60 | hypothetical protein | phrog_4589 | unknown function | unknown function | -1 | 37221 | 37397 |
| AVO22096.1 | MH001454_p64 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38332 | 38712 |
| AVO22099.1 | MH001454_p67 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39549 | 40007 |
| AVO22106.1 | MH001454_p76 | hypothetical protein | phrog_10900 | unknown function | unknown function | -1 | 43231 | 43425 |
| AVO22084.1 | MH001454_p51 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 32116 | 32652 |
| AVO22046.1 | MH001454_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8347 | 9807 |
| AVO22077.1 | MH001454_p44 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 28041 | 29831 |
| AVO22090.1 | MH001454_p58 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 36014 | 36778 |
| AVO22093.1 | MH001454_p61 | NrdH-like glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 37394 | 37663 |
| AVO22116.1 | MH001454_p86 | hypothetical protein | phrog_9830 | unknown function | unknown function | -1 | 47433 | 47618 |
| AVO22122.1 | MH001454_p92 | hypothetical protein | phrog_2554 | unknown function | unknown function | -1 | 49012 | 49743 |
| AVO22057.1 | MH001454_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 14915 | 15298 |
| AVO22074.1 | MH001454_p41 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 27107 | 27355 |
| AVO22091.1 | MH001454_p59 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 36775 | 37224 |
| AVO22056.1 | MH001454_p22 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14199 | 14801 |
| AVO22064.1 | MH001454_p30 | minor tail protein | phrog_2689 | minor tail protein | tail | 1 | 21713 | 23425 |
| AVO22073.1 | MH001454_p40 | hypothetical protein | phrog_13673 | unknown function | unknown function | -1 | 26881 | 27114 |
| AVO22104.1 | MH001454_p74 | DnaB-like dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42152 | 42982 |
| AVO22101.1 | MH001454_p71 | hypothetical protein | phrog_1374 | unknown function | unknown function | -1 | 40651 | 40830 |
| AVO22080.1 | MH001454_p47 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 30478 | 30705 |
| AVO22047.1 | MH001454_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9804 | 10664 |
| AVO22083.1 | MH001454_p50 | MazG-like nucleotide pyrophosphohydrolase | phrog_229 | MazG-like pyrophosphatase | other | -1 | 31684 | 32028 |
| AVO22119.1 | MH001454_p89 | hypothetical protein | phrog_14026 | unknown function | unknown function | -1 | 48000 | 48167 |
| AVO22108.1 | MH001454_p78 | RecB-like exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43727 | 44530 |
| AVO22100.1 | MH001454_p70 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 40242 | 40640 |
| AVO22113.1 | MH001454_p83 | hypothetical protein | phrog_14317 | unknown function | unknown function | -1 | 46313 | 46570 |
| AVO22036.1 | MH001454_p2 | ADP ribosyltransferase | phrog_3895 | ADP-ribosyltransferase exoenzyme toxin | moron, auxiliary metabolic gene and host takeover | 1 | 1335 | 1985 |
| AVO22068.1 | MH001454_p34 | dsDNA partitioning protein | phrog_2639 | Arc-like repressor | transcription regulation | 1 | 25208 | 25522 |
| AVO22062.1 | MH001454_p28 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 20935 | 21378 |
| AVO22102.1 | MH001454_p72 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 40833 | 41597 |
| AVO22088.1 | MH001454_p56 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35150 | 35332 |
| AVO22081.1 | MH001454_p48 | hypothetical protein | phrog_1454 | unknown function | unknown function | -1 | 30705 | 30953 |
| AVO22111.1 | MH001454_p81 | hypothetical protein | phrog_13943 | unknown function | unknown function | -1 | 45908 | 46147 |
| AVO22060.1 | MH001454_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18089 | 19066 |
| AVO22076.1 | MH001454_p43 | hypothetical protein | phrog_16184 | unknown function | unknown function | -1 | 27581 | 28027 |
| AVO22069.1 | MH001454_p35 | hypothetical protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | 1 | 25574 | 25813 |
| AVO22065.1 | MH001454_p31 | DNA binding protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | 1 | 23529 | 23861 |
| AVO22103.1 | MH001454_p73 | hypothetical protein | phrog_13179 | unknown function | unknown function | -1 | 41630 | 42109 |
| AVO22051.1 | MH001454_p17 | head-to-tail connector complex protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12457 | 12834 |
| AVO22059.1 | MH001454_p25 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 15890 | 18079 |
| AVO22035.1 | MH001454_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 430 | 1260 |
| AVO22126.1 | MH001454_p96 | hypothetical protein | phrog_10850 | unknown function | unknown function | -1 | 50632 | 50865 |
| AVO22045.1 | MH001454_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6653 | 8350 |
| AVO22087.1 | MH001454_p55 | hypothetical protein | phrog_37922 | unknown function | unknown function | -1 | 34989 | 35150 |
| AVO22095.1 | MH001454_p63 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37869 | 38501 |