| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MH001457 |
Definition |
Streptomyces phage Nesbitt, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Abbeymikolonvirus; unclassified Abbeymikolonvirus. |
DB of origin |
NUCCORE |
Length |
42446 |
Host Name |
Streptomyces lividans |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
66.83 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVO22260.1 | MH001457_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2376 | 3785 |
| AVO22310.1 | MH001457_p53 | hypothetical protein | phrog_23818 | unknown function | unknown function | 1 | 37170 | 37709 |
| AVO22277.1 | MH001457_p20 | hypothetical protein | phrog_16452 | unknown function | unknown function | 1 | 16635 | 17288 |
| AVO22266.1 | MH001457_p9 | head-to-tail connector complex protein | phrog_501 | head closure Hc1 | connector | 1 | 7263 | 7604 |
| AVO22288.1 | MH001457_p31 | hypothetical protein | phrog_9220 | unknown function | unknown function | 1 | 23274 | 24023 |
| AVO22307.1 | MH001457_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35473 | 36087 |
| AVO22258.1 | MH001457_p1 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 162 | 650 |
| AVO22302.1 | MH001457_p45 | hypothetical protein | phrog_34624 | unknown function | unknown function | 1 | 33591 | 33827 |
| AVO22286.1 | MH001457_p29 | hypothetical protein | phrog_8950 | unknown function | unknown function | 1 | 22712 | 22843 |
| AVO22314.1 | MH001457_p57 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41580 | 41873 |
| AVO22281.1 | MH001457_p24 | deoxynucleoside monophosphate kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 18695 | 19339 |
| AVO22293.1 | MH001457_p36 | hypothetical protein | phrog_29260 | unknown function | unknown function | 1 | 25175 | 25762 |
| AVO22300.1 | MH001457_p43 | RNA polymerase sigma factor | phrog_32691 | RNA polymerase sigma factor | transcription regulation | 1 | 32499 | 33359 |
| AVO22297.1 | MH001457_p40 | DNA primase | phrog_6088 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 26930 | 29377 |
| AVO22290.1 | MH001457_p33 | hypothetical protein | phrog_14927 | unknown function | unknown function | 1 | 24368 | 24598 |
| AVO22295.1 | MH001457_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26165 | 26374 |
| AVO22315.1 | MH001457_p58 | hypothetical protein | phrog_36498 | unknown function | unknown function | 1 | 41939 | 42085 |
| AVO22264.1 | MH001457_p7 | hypothetical protein | phrog_25934 | unknown function | unknown function | 1 | 6562 | 6720 |
| AVO22305.1 | MH001457_p48 | hypothetical protein | phrog_15073 | unknown function | unknown function | 1 | 34701 | 34934 |
| AVO22285.1 | MH001457_p28 | hypothetical protein | phrog_298 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 21736 | 22608 |
| AVO22265.1 | MH001457_p8 | head-to-tail connector complex protein | phrog_442 | head-tail adaptor | connector | 1 | 6733 | 7266 |
| AVO22313.1 | MH001457_p56 | hypothetical protein | phrog_1106 | unknown function | unknown function | 1 | 40243 | 40788 |
| AVO22311.1 | MH001457_p54 | hypothetical protein | phrog_34075 | unknown function | unknown function | 1 | 37728 | 38051 |
| AVO22308.1 | MH001457_p51 | hypothetical protein | phrog_28535 | unknown function | unknown function | 1 | 36391 | 36888 |
| AVO22298.1 | MH001457_p41 | DNA methylase | phrog_363 | DNA methyltransferase | other | 1 | 29441 | 30088 |
| AVO22284.1 | MH001457_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21114 | 21416 |
| AVO22263.1 | MH001457_p6 | major capsid protein | phrog_212 | major head protein | head and packaging | 1 | 5607 | 6551 |
| AVO22306.1 | MH001457_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35045 | 35476 |
| AVO22304.1 | MH001457_p47 | hypothetical protein | phrog_3236 | unknown function | unknown function | 1 | 34330 | 34704 |
| AVO22312.1 | MH001457_p55 | integrase | phrog_95 | integrase | integration and excision | 1 | 38186 | 39901 |
| AVO22274.1 | MH001457_p17 | hypothetical protein | phrog_16363 | unknown function | unknown function | 1 | 12968 | 15220 |
| AVO22301.1 | MH001457_p44 | hypothetical protein | phrog_30347 | unknown function | unknown function | 1 | 33406 | 33594 |
| AVO22262.1 | MH001457_p5 | scaffolding protein | phrog_4708 | head scaffolding protein | head and packaging | 1 | 4857 | 5552 |
| AVO22292.1 | MH001457_p35 | hypothetical protein | phrog_13282 | unknown function | unknown function | 1 | 24858 | 25166 |
| AVO22275.1 | MH001457_p18 | minor tail protein | phrog_1887 | tail protein | tail | 1 | 15235 | 16353 |
| AVO22270.1 | MH001457_p13 | tail assembly chaperone | phrog_10551 | tail assembly chaperone | tail | 1 | 8915 | 9181 |
| AVO22303.1 | MH001457_p46 | hypothetical protein | phrog_33678 | unknown function | unknown function | 1 | 33824 | 34333 |
| AVO22269.1 | MH001457_p12 | major tail protein | phrog_117 | major tail protein | tail | 1 | 8240 | 8812 |
| AVO22279.1 | MH001457_p22 | hypothetical protein | phrog_5225 | unknown function | unknown function | 1 | 18218 | 18436 |
| AVO22273.1 | MH001457_p16 | hypothetical protein | phrog_22293 | unknown function | unknown function | 1 | 12703 | 12909 |
| AVO22283.1 | MH001457_p26 | immunity repressor | phrog_29596 | unknown function | unknown function | 1 | 19975 | 21051 |
| AVO22296.1 | MH001457_p39 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 26358 | 26897 |
| AVO22289.1 | MH001457_p32 | hypothetical protein | phrog_34802 | unknown function | unknown function | 1 | 24144 | 24371 |
| AVO22267.1 | MH001457_p10 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 7604 | 7855 |
| AVO22287.1 | MH001457_p30 | hypothetical protein | phrog_38231 | unknown function | unknown function | 1 | 22840 | 23166 |
| AVO22272.1 | MH001457_p15 | tape measure protein | phrog_971 | endolysin | lysis | 1 | 9565 | 12702 |
| AVO22276.1 | MH001457_p19 | hypothetical protein | phrog_21558 | unknown function | unknown function | 1 | 16353 | 16610 |
| AVO22278.1 | MH001457_p21 | lysin | phrog_9589 | endolysin | lysis | 1 | 17334 | 18188 |
| AVO22282.1 | MH001457_p25 | hypothetical protein | phrog_26783 | unknown function | unknown function | 1 | 19431 | 19805 |
| AVO22259.1 | MH001457_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 643 | 2349 |
| AVO22294.1 | MH001457_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25829 | 26023 |
| AVO22268.1 | MH001457_p11 | head-to-tail connector complex protein | phrog_123 | tail terminator | connector | 1 | 7855 | 8250 |
| AVO22271.1 | MH001457_p14 | tail assembly chaperone | phrog_5813 | tail assembly chaperone | tail | 1 | 9217 | 9561 |
| AVO22309.1 | MH001457_p52 | hypothetical protein | phrog_19898 | unknown function | unknown function | 1 | 36903 | 37148 |
| AVO22280.1 | MH001457_p23 | hypothetical protein | phrog_4316 | unknown function | unknown function | 1 | 18458 | 18670 |
| AVO22261.1 | MH001457_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3796 | 4842 |
| AVO22299.1 | MH001457_p42 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 30153 | 32018 |
| AVO22291.1 | MH001457_p34 | hypothetical protein | phrog_32905 | unknown function | unknown function | 1 | 24682 | 24858 |