Genomic map of Mycobacterium phage Smeagol (MH001458)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MH001458
Definition
Mycobacterium phage Smeagol, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
NUCCORE
Length
53134
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
90
%GC
63.67
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AVO22367.1 MH001458_p53 metallophosphoesterase phrog_221 metallo-phosphoesterase other -1 38224 38991
AVO22370.1 MH001458_p56 hypothetical protein phrog_8843 unknown function unknown function -1 39691 39912
AVO22364.1 MH001458_p50 hypothetical protein phrog_499 unknown function unknown function -1 37097 37279
AVO22329.1 MH001458_p14 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10983 11864
AVO22349.1 MH001458_p35 hypothetical protein phrog_644 unknown function unknown function 1 28818 29192
AVO22355.1 MH001458_p41 hypothetical protein phrog_2035 unknown function unknown function -1 32727 32897
AVO22377.1 MH001458_p64 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 42749 43015
AVO22341.1 MH001458_p27 minor tail protein phrog_106 minor tail protein tail 1 20204 22261
AVO22376.1 MH001458_p63 hypothetical protein phrog_1019 unknown function unknown function -1 42633 42752
AVO22379.1 MH001458_p66 dsDNA helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 43121 43930
AVO22347.1 MH001458_p33 minor tail protein phrog_346 minor tail protein tail 1 25439 27289
AVO22333.1 MH001458_p18 hypothetical protein phrog_1857 head-tail connector protein connector 1 13730 14248
AVO22316.1 MH001458_p1 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 596 892
AVO22336.1 MH001458_p21 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 15059 15454
AVO22321.1 MH001458_p6 hypothetical protein phrog_1197 tail protein tail 1 3028 4098
AVO22391.1 MH001458_p78 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 48215 48727
AVO22381.1 MH001458_p68 hypothetical protein phrog_520 unknown function unknown function -1 44060 44353
AVO22340.1 MH001458_p26 tape measure protein phrog_305 tail length tape measure protein tail 1 17697 20180
AVO22330.1 MH001458_p15 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 11925 12437
AVO22325.1 MH001458_p10 lysin A phrog_317 endolysin lysis 1 5472 6884
AVO22354.1 MH001458_p40 hypothetical protein phrog_1966 unknown function unknown function -1 32458 32730
AVO22343.1 MH001458_p29 minor tail protein phrog_110 minor tail protein tail 1 22440 24242
AVO22361.1 MH001458_p47 hypothetical protein phrog_1781 unknown function unknown function -1 35983 36213
AVO22394.1 MH001458_p81 hypothetical protein phrog_1720 unknown function unknown function -1 49491 49826
AVO22350.1 MH001458_p36 hypothetical protein phrog_1560 unknown function unknown function 1 29202 29393
AVO22371.1 MH001458_p57 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 39909 40430
AVO22383.1 MH001458_p70 exonuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 44566 45369
AVO22366.1 MH001458_p52 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 38084 38224
AVO22365.1 MH001458_p51 helix-turn-helix DNA binding domain protein phrog_354 sigma-K factor transcription regulation -1 37276 38091
AVO22363.1 MH001458_p49 hypothetical protein phrog_2094 unknown function unknown function -1 36771 37100
AVO22328.1 MH001458_p13 portal protein phrog_104 portal protein head and packaging 1 9550 10986
AVO22373.1 MH001458_p60 hypothetical protein phrog_397 unknown function unknown function -1 40925 41059
AVO22392.1 MH001458_p79 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 48989 49291
AVO22369.1 MH001458_p55 hypothetical protein phrog_1167 phosphofructokinase other -1 39155 39706
AVO22326.1 MH001458_p11 lysin B phrog_102 endolysin lysis 1 6874 7845
AVO22322.1 MH001458_p7 minor tail protein phrog_553 minor tail protein tail 1 4108 4797
AVO22402.1 MH001458_p89 hypothetical protein phrog_8345 unknown function unknown function -1 52145 52339
AVO22404.1 MH001458_p58 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 40276 40791
AVO22382.1 MH001458_p69 helix-turn-helix DNA binding domain protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 44357 44539
AVO22405.1 MH001458_p24 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 16886 17685
AVO22396.1 MH001458_p83 hypothetical protein phrog_464 unknown function unknown function -1 50023 50364
AVO22403.1 MH001458_p90 hypothetical protein phrog_828 unknown function unknown function -1 52336 52545
AVO22348.1 MH001458_p34 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 27282 28781
AVO22318.1 MH001458_p3 terminase small subunit phrog_226 minor tail protein tail 1 1436 1876
AVO22353.1 MH001458_p39 integrase phrog_95 integrase integration and excision 1 30836 32335
AVO22380.1 MH001458_p67 hypothetical protein phrog_1705 unknown function unknown function -1 43917 44063
AVO22375.1 MH001458_p62 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 42152 42613
AVO22401.1 MH001458_p88 hypothetical protein phrog_932 unknown function unknown function -1 51403 51555
AVO22344.1 MH001458_p30 minor tail protein phrog_352 minor tail protein tail 1 24280 24726
AVO22337.1 MH001458_p22 head-to-tail connector complex protein phrog_123 tail terminator connector 1 15458 15904
AVO22334.1 MH001458_p19 head-to-tail connector complex protein phrog_137 head-tail adaptor Ad1 connector 1 14248 14697
AVO22393.1 MH001458_p80 hypothetical protein singleton unknown function unknown function -1 49288 49464
AVO22384.1 MH001458_p71 hypothetical protein phrog_4285 transposase integration and excision -1 45366 46076
AVO22400.1 MH001458_p87 hypothetical protein phrog_2093 unknown function unknown function -1 51254 51382
AVO22399.1 MH001458_p86 hypothetical protein phrog_12963 unknown function unknown function -1 51039 51257
AVO22351.1 MH001458_p37 hypothetical protein phrog_754 minor tail protein tail 1 29393 30175
AVO22335.1 MH001458_p20 head-to-tail connector complex protein phrog_320 head closure Hc1 connector 1 14697 15059
AVO22389.1 MH001458_p76 hypothetical protein phrog_1584 unknown function unknown function -1 47464 47781
AVO22342.1 MH001458_p28 minor tail protein phrog_1543 minor tail protein tail 1 22258 22440
AVO22317.1 MH001458_p2 HNH endonuclease phrog_826 HNH endonuclease DNA, RNA and nucleotide metabolism 1 927 1436
AVO22356.1 MH001458_p42 hypothetical protein phrog_30784 unknown function unknown function -1 32894 33127
AVO22323.1 MH001458_p8 hypothetical protein phrog_1718 tail protein tail 1 4947 5207
AVO22320.1 MH001458_p5 hypothetical protein singleton unknown function unknown function 1 2481 2720
AVO22397.1 MH001458_p84 hypothetical protein phrog_5429 DNA repair protein DNA, RNA and nucleotide metabolism -1 50357 50857
AVO22387.1 MH001458_p74 hypothetical protein phrog_5947 unknown function unknown function -1 47095 47247
AVO22386.1 MH001458_p73 hypothetical protein phrog_6068 unknown function unknown function -1 46869 47102
AVO22359.1 MH001458_p45 hypothetical protein phrog_3771 unknown function unknown function -1 33785 34099
AVO22332.1 MH001458_p17 hypothetical protein phrog_30633 unknown function unknown function 1 13466 13654
AVO22357.1 MH001458_p43 hypothetical protein phrog_1971 unknown function unknown function -1 33124 33429
AVO22360.1 MH001458_p46 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 34120 35946
AVO22345.1 MH001458_p31 minor tail protein phrog_981 minor tail protein tail 1 24738 25070
AVO22395.1 MH001458_p82 hypothetical protein phrog_1387 unknown function unknown function -1 49823 50026
AVO22374.1 MH001458_p61 DNA methylase phrog_67 DNA methyltransferase other -1 41085 42155
AVO22358.1 MH001458_p44 hypothetical protein phrog_383 unknown function unknown function -1 33426 33785
AVO22390.1 MH001458_p77 hypothetical protein phrog_1809 unknown function unknown function -1 47778 48173
AVO22339.1 MH001458_p25 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16886 17263
AVO22324.1 MH001458_p9 hypothetical protein phrog_747 unknown function unknown function 1 5215 5472
AVO22331.1 MH001458_p16 major capsid protein phrog_10 major head protein head and packaging 1 12447 13466
AVO22338.1 MH001458_p23 major tail protein phrog_117 major tail protein tail 1 15913 16764
AVO22378.1 MH001458_p65 hypothetical protein phrog_5742 unknown function unknown function -1 43022 43120
AVO22385.1 MH001458_p72 hypothetical protein phrog_4604 unknown function unknown function -1 46411 46872
AVO22327.1 MH001458_p12 terminase large subunit phrog_9 terminase large subunit head and packaging 1 7865 9553
AVO22352.1 MH001458_p38 hypothetical protein phrog_411 unknown function unknown function 1 30296 30580
AVO22362.1 MH001458_p48 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 36244 36735
AVO22372.1 MH001458_p59 hypothetical protein phrog_1783 unknown function unknown function -1 40770 40928
AVO22398.1 MH001458_p85 hypothetical protein phrog_1155 unknown function unknown function -1 50854 51042
AVO22368.1 MH001458_p54 hypothetical protein phrog_1503 unknown function unknown function -1 38988 39158
AVO22388.1 MH001458_p75 hypothetical protein phrog_17362 unknown function unknown function -1 47240 47467
AVO22319.1 MH001458_p4 hypothetical protein phrog_10659 unknown function unknown function 1 2209 2484
AVO22346.1 MH001458_p32 hypothetical protein phrog_1397 unknown function unknown function 1 25067 25414