| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MH001458 |
Definition |
Mycobacterium phage Smeagol, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
53134 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
90 |
%GC |
63.67 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVO22367.1 | MH001458_p53 | metallophosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 38224 | 38991 |
| AVO22370.1 | MH001458_p56 | hypothetical protein | phrog_8843 | unknown function | unknown function | -1 | 39691 | 39912 |
| AVO22364.1 | MH001458_p50 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 37097 | 37279 |
| AVO22329.1 | MH001458_p14 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10983 | 11864 |
| AVO22349.1 | MH001458_p35 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28818 | 29192 |
| AVO22355.1 | MH001458_p41 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 32727 | 32897 |
| AVO22377.1 | MH001458_p64 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42749 | 43015 |
| AVO22341.1 | MH001458_p27 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 20204 | 22261 |
| AVO22376.1 | MH001458_p63 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 42633 | 42752 |
| AVO22379.1 | MH001458_p66 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 43121 | 43930 |
| AVO22347.1 | MH001458_p33 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 25439 | 27289 |
| AVO22333.1 | MH001458_p18 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 13730 | 14248 |
| AVO22316.1 | MH001458_p1 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 596 | 892 |
| AVO22336.1 | MH001458_p21 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 15059 | 15454 |
| AVO22321.1 | MH001458_p6 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 3028 | 4098 |
| AVO22391.1 | MH001458_p78 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 48215 | 48727 |
| AVO22381.1 | MH001458_p68 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 44060 | 44353 |
| AVO22340.1 | MH001458_p26 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 17697 | 20180 |
| AVO22330.1 | MH001458_p15 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11925 | 12437 |
| AVO22325.1 | MH001458_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 5472 | 6884 |
| AVO22354.1 | MH001458_p40 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 32458 | 32730 |
| AVO22343.1 | MH001458_p29 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 22440 | 24242 |
| AVO22361.1 | MH001458_p47 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35983 | 36213 |
| AVO22394.1 | MH001458_p81 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 49491 | 49826 |
| AVO22350.1 | MH001458_p36 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 29202 | 29393 |
| AVO22371.1 | MH001458_p57 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39909 | 40430 |
| AVO22383.1 | MH001458_p70 | exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44566 | 45369 |
| AVO22366.1 | MH001458_p52 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 38084 | 38224 |
| AVO22365.1 | MH001458_p51 | helix-turn-helix DNA binding domain protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 37276 | 38091 |
| AVO22363.1 | MH001458_p49 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 36771 | 37100 |
| AVO22328.1 | MH001458_p13 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9550 | 10986 |
| AVO22373.1 | MH001458_p60 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40925 | 41059 |
| AVO22392.1 | MH001458_p79 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48989 | 49291 |
| AVO22369.1 | MH001458_p55 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 39155 | 39706 |
| AVO22326.1 | MH001458_p11 | lysin B | phrog_102 | endolysin | lysis | 1 | 6874 | 7845 |
| AVO22322.1 | MH001458_p7 | minor tail protein | phrog_553 | minor tail protein | tail | 1 | 4108 | 4797 |
| AVO22402.1 | MH001458_p89 | hypothetical protein | phrog_8345 | unknown function | unknown function | -1 | 52145 | 52339 |
| AVO22404.1 | MH001458_p58 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 40276 | 40791 |
| AVO22382.1 | MH001458_p69 | helix-turn-helix DNA binding domain protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44357 | 44539 |
| AVO22405.1 | MH001458_p24 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16886 | 17685 |
| AVO22396.1 | MH001458_p83 | hypothetical protein | phrog_464 | unknown function | unknown function | -1 | 50023 | 50364 |
| AVO22403.1 | MH001458_p90 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 52336 | 52545 |
| AVO22348.1 | MH001458_p34 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 27282 | 28781 |
| AVO22318.1 | MH001458_p3 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 1436 | 1876 |
| AVO22353.1 | MH001458_p39 | integrase | phrog_95 | integrase | integration and excision | 1 | 30836 | 32335 |
| AVO22380.1 | MH001458_p67 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 43917 | 44063 |
| AVO22375.1 | MH001458_p62 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 42152 | 42613 |
| AVO22401.1 | MH001458_p88 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 51403 | 51555 |
| AVO22344.1 | MH001458_p30 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 24280 | 24726 |
| AVO22337.1 | MH001458_p22 | head-to-tail connector complex protein | phrog_123 | tail terminator | connector | 1 | 15458 | 15904 |
| AVO22334.1 | MH001458_p19 | head-to-tail connector complex protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 14248 | 14697 |
| AVO22393.1 | MH001458_p80 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49288 | 49464 |
| AVO22384.1 | MH001458_p71 | hypothetical protein | phrog_4285 | transposase | integration and excision | -1 | 45366 | 46076 |
| AVO22400.1 | MH001458_p87 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 51254 | 51382 |
| AVO22399.1 | MH001458_p86 | hypothetical protein | phrog_12963 | unknown function | unknown function | -1 | 51039 | 51257 |
| AVO22351.1 | MH001458_p37 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 29393 | 30175 |
| AVO22335.1 | MH001458_p20 | head-to-tail connector complex protein | phrog_320 | head closure Hc1 | connector | 1 | 14697 | 15059 |
| AVO22389.1 | MH001458_p76 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 47464 | 47781 |
| AVO22342.1 | MH001458_p28 | minor tail protein | phrog_1543 | minor tail protein | tail | 1 | 22258 | 22440 |
| AVO22317.1 | MH001458_p2 | HNH endonuclease | phrog_826 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 927 | 1436 |
| AVO22356.1 | MH001458_p42 | hypothetical protein | phrog_30784 | unknown function | unknown function | -1 | 32894 | 33127 |
| AVO22323.1 | MH001458_p8 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4947 | 5207 |
| AVO22320.1 | MH001458_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2481 | 2720 |
| AVO22397.1 | MH001458_p84 | hypothetical protein | phrog_5429 | DNA repair protein | DNA, RNA and nucleotide metabolism | -1 | 50357 | 50857 |
| AVO22387.1 | MH001458_p74 | hypothetical protein | phrog_5947 | unknown function | unknown function | -1 | 47095 | 47247 |
| AVO22386.1 | MH001458_p73 | hypothetical protein | phrog_6068 | unknown function | unknown function | -1 | 46869 | 47102 |
| AVO22359.1 | MH001458_p45 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 33785 | 34099 |
| AVO22332.1 | MH001458_p17 | hypothetical protein | phrog_30633 | unknown function | unknown function | 1 | 13466 | 13654 |
| AVO22357.1 | MH001458_p43 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 33124 | 33429 |
| AVO22360.1 | MH001458_p46 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 34120 | 35946 |
| AVO22345.1 | MH001458_p31 | minor tail protein | phrog_981 | minor tail protein | tail | 1 | 24738 | 25070 |
| AVO22395.1 | MH001458_p82 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 49823 | 50026 |
| AVO22374.1 | MH001458_p61 | DNA methylase | phrog_67 | DNA methyltransferase | other | -1 | 41085 | 42155 |
| AVO22358.1 | MH001458_p44 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 33426 | 33785 |
| AVO22390.1 | MH001458_p77 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 47778 | 48173 |
| AVO22339.1 | MH001458_p25 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16886 | 17263 |
| AVO22324.1 | MH001458_p9 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 5215 | 5472 |
| AVO22331.1 | MH001458_p16 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12447 | 13466 |
| AVO22338.1 | MH001458_p23 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15913 | 16764 |
| AVO22378.1 | MH001458_p65 | hypothetical protein | phrog_5742 | unknown function | unknown function | -1 | 43022 | 43120 |
| AVO22385.1 | MH001458_p72 | hypothetical protein | phrog_4604 | unknown function | unknown function | -1 | 46411 | 46872 |
| AVO22327.1 | MH001458_p12 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 7865 | 9553 |
| AVO22352.1 | MH001458_p38 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 30296 | 30580 |
| AVO22362.1 | MH001458_p48 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 36244 | 36735 |
| AVO22372.1 | MH001458_p59 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 40770 | 40928 |
| AVO22398.1 | MH001458_p85 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 50854 | 51042 |
| AVO22368.1 | MH001458_p54 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38988 | 39158 |
| AVO22388.1 | MH001458_p75 | hypothetical protein | phrog_17362 | unknown function | unknown function | -1 | 47240 | 47467 |
| AVO22319.1 | MH001458_p4 | hypothetical protein | phrog_10659 | unknown function | unknown function | 1 | 2209 | 2484 |
| AVO22346.1 | MH001458_p32 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 25067 | 25414 |