Genomic map of Streptomyces phage Paedore (MH001460)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MH001460
Definition
Streptomyces phage Paedore, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Arquatrovirinae; Arequatrovirus; unclassified Arequatrovirus.
DB of origin
NUCCORE
Length
52743
Host Name
Streptomyces lividans
Host domain
Bacteria
Is prophage?
undef
Number of proteins
84
%GC
66.99
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AVO22495.1 MH001460_p12 head-to-tail connector protein phrog_320 head closure Hc1 connector 1 8748 9086
AVO22502.1 MH001460_p19 minor tail protein phrog_33 distal tail protein Dit tail 1 14964 15821
AVO22543.1 MH001460_p60 hypothetical protein phrog_3965 unknown function unknown function -1 41322 41819
AVO22489.1 MH001460_p6 terminase phrog_9 terminase large subunit head and packaging 1 2247 3908
AVO22542.1 MH001460_p59 hypothetical protein phrog_3424 unknown function unknown function -1 41098 41325
AVO22501.1 MH001460_p18 tape measure protein phrog_305 tail length tape measure protein tail 1 11772 14957
AVO22567.1 MH001460_p84 hypothetical protein phrog_23917 unknown function unknown function -1 51363 51581
AVO22499.1 MH001460_p17 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 10918 11259
AVO22507.1 MH001460_p24 minor tail protein phrog_988 tail protein tail 1 20058 21338
AVO22553.1 MH001460_p70 hypothetical protein phrog_421 unknown function unknown function -1 44761 45492
AVO22516.1 MH001460_p33 hypothetical protein phrog_1288 unknown function unknown function 1 26388 26825
AVO22561.1 MH001460_p78 hypothetical protein phrog_12223 unknown function unknown function -1 49429 49566
AVO22494.1 MH001460_p11 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 8254 8751
AVO22545.1 MH001460_p62 hypothetical protein phrog_20471 unknown function unknown function -1 42101 42505
AVO22506.1 MH001460_p23 hypothetical protein phrog_4817 unknown function unknown function 1 19542 20027
AVO22524.1 MH001460_p41 hypothetical protein phrog_10412 unknown function unknown function 1 30246 30458
AVO22536.1 MH001460_p53 helix-turn-helix DNA binding domain protein phrog_5823 transcriptional regulator transcription regulation -1 36358 37509
AVO22527.1 MH001460_p44 endonuclease phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 30857 32062
AVO22551.1 MH001460_p68 hypothetical protein phrog_13837 unknown function unknown function -1 44040 44372
AVO22555.1 MH001460_p72 hypothetical protein phrog_3908 unknown function unknown function -1 46259 46477
AVO22554.1 MH001460_p71 hypothetical protein phrog_3994 unknown function unknown function -1 45584 46003
AVO22557.1 MH001460_p74 hypothetical protein phrog_2355 unknown function unknown function -1 47006 47422
AVO22552.1 MH001460_p69 hypothetical protein singleton unknown function unknown function -1 44454 44675
AVO22538.1 MH001460_p55 hypothetical protein phrog_9533 unknown function unknown function -1 39223 39423
AVO22537.1 MH001460_p54 integrase phrog_95 integrase integration and excision 1 37729 39147
AVO22487.1 MH001460_p4 hypothetical protein phrog_3555 unknown function unknown function 1 1456 1686
AVO22533.1 MH001460_p50 hypothetical protein phrog_22999 unknown function unknown function -1 35726 35836
AVO22556.1 MH001460_p73 hypothetical protein phrog_4239 unknown function unknown function -1 46489 46884
AVO22526.1 MH001460_p43 hypothetical protein phrog_3979 unknown function unknown function 1 30649 30873
AVO22562.1 MH001460_p79 hypothetical protein phrog_20423 unknown function unknown function -1 49638 49826
AVO22520.1 MH001460_p37 hypothetical protein phrog_4673 unknown function unknown function 1 28637 28774
AVO22511.1 MH001460_p28 hypothetical protein phrog_4061 unknown function unknown function -1 23105 23452
AVO22498.1 MH001460_p15 major tail protein phrog_117 major tail protein tail 1 10057 10797
AVO22535.1 MH001460_p52 hypothetical protein singleton unknown function unknown function -1 36069 36296
AVO22493.1 MH001460_p10 major capsid protein phrog_283 major head protein head and packaging 1 7111 8178
AVO22503.1 MH001460_p20 minor tail protein phrog_538 minor tail protein tail 1 15822 17033
AVO22560.1 MH001460_p77 hypothetical protein phrog_4313 unknown function unknown function -1 48335 49129
AVO22497.1 MH001460_p14 hypothetical protein phrog_123 tail terminator connector 1 9547 10044
AVO22541.1 MH001460_p58 hypothetical protein phrog_11485 unknown function unknown function -1 40388 40831
AVO22514.1 MH001460_p31 exonuclease phrog_466 exonuclease DNA, RNA and nucleotide metabolism 1 24746 25732
AVO22547.1 MH001460_p64 deoxynucleoside monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other -1 42704 43291
AVO22565.1 MH001460_p82 hypothetical protein phrog_4485 unknown function unknown function -1 50675 50863
AVO22490.1 MH001460_p7 portal protein phrog_104 portal protein head and packaging 1 3938 5407
AVO22549.1 MH001460_p66 hypothetical protein phrog_5209 unknown function unknown function -1 43484 43798
AVO22528.1 MH001460_p45 hypothetical protein phrog_1340 unknown function unknown function 1 32059 32415
AVO22558.1 MH001460_p75 hypothetical protein phrog_4275 unknown function unknown function -1 47451 47594
AVO22566.1 MH001460_p83 hypothetical protein phrog_11579 unknown function unknown function -1 50974 51366
AVO22523.1 MH001460_p40 hypothetical protein phrog_4022 unknown function unknown function 1 29887 30249
AVO22508.1 MH001460_p25 hypothetical protein phrog_3534 unknown function unknown function 1 21359 21718
AVO22530.1 MH001460_p47 hypothetical protein phrog_4123 unknown function unknown function 1 32795 33172
AVO22521.1 MH001460_p38 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism 1 28771 29205
AVO22540.1 MH001460_p57 hypothetical protein phrog_4071 unknown function unknown function -1 40124 40387
AVO22546.1 MH001460_p63 hypothetical protein phrog_4024 unknown function unknown function -1 42502 42702
AVO22492.1 MH001460_p9 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 6516 7034
AVO22518.1 MH001460_p35 dsDNA helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 27409 28197
AVO22534.1 MH001460_p51 hypothetical protein phrog_10944 unknown function unknown function -1 35833 36072
AVO22563.1 MH001460_p80 hypothetical protein phrog_2563 unknown function unknown function -1 49887 50267
AVO22564.1 MH001460_p81 hypothetical protein phrog_34528 unknown function unknown function -1 50367 50591
AVO22519.1 MH001460_p36 holliday junction resolvase phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 28263 28640
AVO22529.1 MH001460_p46 helix-turn-helix DNA binding domain protein phrog_3512 sigma factor transcription regulation 1 32412 32798
AVO22500.1 MH001460_p16 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 10918 11651
AVO22548.1 MH001460_p65 hypothetical protein phrog_25829 unknown function unknown function -1 43288 43479
AVO22522.1 MH001460_p39 DNA primase phrog_849 DNA primase DNA, RNA and nucleotide metabolism 1 29220 29882
AVO22513.1 MH001460_p30 hypothetical protein phrog_20055 unknown function unknown function 1 24227 24745
AVO22484.1 MH001460_p1 hypothetical protein phrog_4207 unknown function unknown function -1 25 219
AVO22532.1 MH001460_p49 hypothetical protein phrog_15237 unknown function unknown function 1 35377 35544
AVO22544.1 MH001460_p61 hypothetical protein phrog_1997 unknown function unknown function -1 41816 42010
AVO22488.1 MH001460_p5 hypothetical protein phrog_226 minor tail protein tail 1 1802 2233
AVO22509.1 MH001460_p26 lysin A phrog_1493 endolysin lysis 1 21765 22841
AVO22504.1 MH001460_p21 hypothetical protein phrog_1276 unknown function unknown function 1 17038 17340
AVO22550.1 MH001460_p67 hypothetical protein phrog_3991 unknown function unknown function -1 43795 44040
AVO22559.1 MH001460_p76 hypothetical protein phrog_16954 unknown function unknown function -1 47674 48234
AVO22505.1 MH001460_p22 hypothetical protein phrog_4013 unknown function unknown function 1 17341 19530
AVO22486.1 MH001460_p3 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 682 996
AVO22496.1 MH001460_p13 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 9152 9547
AVO22531.1 MH001460_p48 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 33250 35346
AVO22515.1 MH001460_p32 hypothetical protein phrog_3912 unknown function unknown function 1 25843 26325
AVO22512.1 MH001460_p29 immunity repressor phrog_3929 transcriptional repressor transcription regulation 1 23512 23970
AVO22525.1 MH001460_p42 hypothetical protein phrog_24938 unknown function unknown function 1 30459 30647
AVO22510.1 MH001460_p27 hypothetical protein phrog_4092 unknown function unknown function 1 22838 23050
AVO22517.1 MH001460_p34 deoxycytidylate deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 26900 27385
AVO22485.1 MH001460_p2 hypothetical protein singleton unknown function unknown function -1 260 664
AVO22539.1 MH001460_p56 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 39420 40127
AVO22491.1 MH001460_p8 hypothetical protein phrog_193 head maturation protease head and packaging 1 5404 6513