| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MH001460 |
Definition |
Streptomyces phage Paedore, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Arquatrovirinae; Arequatrovirus; unclassified Arequatrovirus. |
DB of origin |
NUCCORE |
Length |
52743 |
Host Name |
Streptomyces lividans |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
84 |
%GC |
66.99 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVO22495.1 | MH001460_p12 | head-to-tail connector protein | phrog_320 | head closure Hc1 | connector | 1 | 8748 | 9086 |
| AVO22502.1 | MH001460_p19 | minor tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 14964 | 15821 |
| AVO22543.1 | MH001460_p60 | hypothetical protein | phrog_3965 | unknown function | unknown function | -1 | 41322 | 41819 |
| AVO22489.1 | MH001460_p6 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 2247 | 3908 |
| AVO22542.1 | MH001460_p59 | hypothetical protein | phrog_3424 | unknown function | unknown function | -1 | 41098 | 41325 |
| AVO22501.1 | MH001460_p18 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 11772 | 14957 |
| AVO22567.1 | MH001460_p84 | hypothetical protein | phrog_23917 | unknown function | unknown function | -1 | 51363 | 51581 |
| AVO22499.1 | MH001460_p17 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 10918 | 11259 |
| AVO22507.1 | MH001460_p24 | minor tail protein | phrog_988 | tail protein | tail | 1 | 20058 | 21338 |
| AVO22553.1 | MH001460_p70 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 44761 | 45492 |
| AVO22516.1 | MH001460_p33 | hypothetical protein | phrog_1288 | unknown function | unknown function | 1 | 26388 | 26825 |
| AVO22561.1 | MH001460_p78 | hypothetical protein | phrog_12223 | unknown function | unknown function | -1 | 49429 | 49566 |
| AVO22494.1 | MH001460_p11 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8254 | 8751 |
| AVO22545.1 | MH001460_p62 | hypothetical protein | phrog_20471 | unknown function | unknown function | -1 | 42101 | 42505 |
| AVO22506.1 | MH001460_p23 | hypothetical protein | phrog_4817 | unknown function | unknown function | 1 | 19542 | 20027 |
| AVO22524.1 | MH001460_p41 | hypothetical protein | phrog_10412 | unknown function | unknown function | 1 | 30246 | 30458 |
| AVO22536.1 | MH001460_p53 | helix-turn-helix DNA binding domain protein | phrog_5823 | transcriptional regulator | transcription regulation | -1 | 36358 | 37509 |
| AVO22527.1 | MH001460_p44 | endonuclease | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 30857 | 32062 |
| AVO22551.1 | MH001460_p68 | hypothetical protein | phrog_13837 | unknown function | unknown function | -1 | 44040 | 44372 |
| AVO22555.1 | MH001460_p72 | hypothetical protein | phrog_3908 | unknown function | unknown function | -1 | 46259 | 46477 |
| AVO22554.1 | MH001460_p71 | hypothetical protein | phrog_3994 | unknown function | unknown function | -1 | 45584 | 46003 |
| AVO22557.1 | MH001460_p74 | hypothetical protein | phrog_2355 | unknown function | unknown function | -1 | 47006 | 47422 |
| AVO22552.1 | MH001460_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44454 | 44675 |
| AVO22538.1 | MH001460_p55 | hypothetical protein | phrog_9533 | unknown function | unknown function | -1 | 39223 | 39423 |
| AVO22537.1 | MH001460_p54 | integrase | phrog_95 | integrase | integration and excision | 1 | 37729 | 39147 |
| AVO22487.1 | MH001460_p4 | hypothetical protein | phrog_3555 | unknown function | unknown function | 1 | 1456 | 1686 |
| AVO22533.1 | MH001460_p50 | hypothetical protein | phrog_22999 | unknown function | unknown function | -1 | 35726 | 35836 |
| AVO22556.1 | MH001460_p73 | hypothetical protein | phrog_4239 | unknown function | unknown function | -1 | 46489 | 46884 |
| AVO22526.1 | MH001460_p43 | hypothetical protein | phrog_3979 | unknown function | unknown function | 1 | 30649 | 30873 |
| AVO22562.1 | MH001460_p79 | hypothetical protein | phrog_20423 | unknown function | unknown function | -1 | 49638 | 49826 |
| AVO22520.1 | MH001460_p37 | hypothetical protein | phrog_4673 | unknown function | unknown function | 1 | 28637 | 28774 |
| AVO22511.1 | MH001460_p28 | hypothetical protein | phrog_4061 | unknown function | unknown function | -1 | 23105 | 23452 |
| AVO22498.1 | MH001460_p15 | major tail protein | phrog_117 | major tail protein | tail | 1 | 10057 | 10797 |
| AVO22535.1 | MH001460_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36069 | 36296 |
| AVO22493.1 | MH001460_p10 | major capsid protein | phrog_283 | major head protein | head and packaging | 1 | 7111 | 8178 |
| AVO22503.1 | MH001460_p20 | minor tail protein | phrog_538 | minor tail protein | tail | 1 | 15822 | 17033 |
| AVO22560.1 | MH001460_p77 | hypothetical protein | phrog_4313 | unknown function | unknown function | -1 | 48335 | 49129 |
| AVO22497.1 | MH001460_p14 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9547 | 10044 |
| AVO22541.1 | MH001460_p58 | hypothetical protein | phrog_11485 | unknown function | unknown function | -1 | 40388 | 40831 |
| AVO22514.1 | MH001460_p31 | exonuclease | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 24746 | 25732 |
| AVO22547.1 | MH001460_p64 | deoxynucleoside monophosphate kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 42704 | 43291 |
| AVO22565.1 | MH001460_p82 | hypothetical protein | phrog_4485 | unknown function | unknown function | -1 | 50675 | 50863 |
| AVO22490.1 | MH001460_p7 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 3938 | 5407 |
| AVO22549.1 | MH001460_p66 | hypothetical protein | phrog_5209 | unknown function | unknown function | -1 | 43484 | 43798 |
| AVO22528.1 | MH001460_p45 | hypothetical protein | phrog_1340 | unknown function | unknown function | 1 | 32059 | 32415 |
| AVO22558.1 | MH001460_p75 | hypothetical protein | phrog_4275 | unknown function | unknown function | -1 | 47451 | 47594 |
| AVO22566.1 | MH001460_p83 | hypothetical protein | phrog_11579 | unknown function | unknown function | -1 | 50974 | 51366 |
| AVO22523.1 | MH001460_p40 | hypothetical protein | phrog_4022 | unknown function | unknown function | 1 | 29887 | 30249 |
| AVO22508.1 | MH001460_p25 | hypothetical protein | phrog_3534 | unknown function | unknown function | 1 | 21359 | 21718 |
| AVO22530.1 | MH001460_p47 | hypothetical protein | phrog_4123 | unknown function | unknown function | 1 | 32795 | 33172 |
| AVO22521.1 | MH001460_p38 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 28771 | 29205 |
| AVO22540.1 | MH001460_p57 | hypothetical protein | phrog_4071 | unknown function | unknown function | -1 | 40124 | 40387 |
| AVO22546.1 | MH001460_p63 | hypothetical protein | phrog_4024 | unknown function | unknown function | -1 | 42502 | 42702 |
| AVO22492.1 | MH001460_p9 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 6516 | 7034 |
| AVO22518.1 | MH001460_p35 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 27409 | 28197 |
| AVO22534.1 | MH001460_p51 | hypothetical protein | phrog_10944 | unknown function | unknown function | -1 | 35833 | 36072 |
| AVO22563.1 | MH001460_p80 | hypothetical protein | phrog_2563 | unknown function | unknown function | -1 | 49887 | 50267 |
| AVO22564.1 | MH001460_p81 | hypothetical protein | phrog_34528 | unknown function | unknown function | -1 | 50367 | 50591 |
| AVO22519.1 | MH001460_p36 | holliday junction resolvase | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28263 | 28640 |
| AVO22529.1 | MH001460_p46 | helix-turn-helix DNA binding domain protein | phrog_3512 | sigma factor | transcription regulation | 1 | 32412 | 32798 |
| AVO22500.1 | MH001460_p16 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 10918 | 11651 |
| AVO22548.1 | MH001460_p65 | hypothetical protein | phrog_25829 | unknown function | unknown function | -1 | 43288 | 43479 |
| AVO22522.1 | MH001460_p39 | DNA primase | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 29220 | 29882 |
| AVO22513.1 | MH001460_p30 | hypothetical protein | phrog_20055 | unknown function | unknown function | 1 | 24227 | 24745 |
| AVO22484.1 | MH001460_p1 | hypothetical protein | phrog_4207 | unknown function | unknown function | -1 | 25 | 219 |
| AVO22532.1 | MH001460_p49 | hypothetical protein | phrog_15237 | unknown function | unknown function | 1 | 35377 | 35544 |
| AVO22544.1 | MH001460_p61 | hypothetical protein | phrog_1997 | unknown function | unknown function | -1 | 41816 | 42010 |
| AVO22488.1 | MH001460_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1802 | 2233 |
| AVO22509.1 | MH001460_p26 | lysin A | phrog_1493 | endolysin | lysis | 1 | 21765 | 22841 |
| AVO22504.1 | MH001460_p21 | hypothetical protein | phrog_1276 | unknown function | unknown function | 1 | 17038 | 17340 |
| AVO22550.1 | MH001460_p67 | hypothetical protein | phrog_3991 | unknown function | unknown function | -1 | 43795 | 44040 |
| AVO22559.1 | MH001460_p76 | hypothetical protein | phrog_16954 | unknown function | unknown function | -1 | 47674 | 48234 |
| AVO22505.1 | MH001460_p22 | hypothetical protein | phrog_4013 | unknown function | unknown function | 1 | 17341 | 19530 |
| AVO22486.1 | MH001460_p3 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 682 | 996 |
| AVO22496.1 | MH001460_p13 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 9152 | 9547 |
| AVO22531.1 | MH001460_p48 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 33250 | 35346 |
| AVO22515.1 | MH001460_p32 | hypothetical protein | phrog_3912 | unknown function | unknown function | 1 | 25843 | 26325 |
| AVO22512.1 | MH001460_p29 | immunity repressor | phrog_3929 | transcriptional repressor | transcription regulation | 1 | 23512 | 23970 |
| AVO22525.1 | MH001460_p42 | hypothetical protein | phrog_24938 | unknown function | unknown function | 1 | 30459 | 30647 |
| AVO22510.1 | MH001460_p27 | hypothetical protein | phrog_4092 | unknown function | unknown function | 1 | 22838 | 23050 |
| AVO22517.1 | MH001460_p34 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 26900 | 27385 |
| AVO22485.1 | MH001460_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 260 | 664 |
| AVO22539.1 | MH001460_p56 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 39420 | 40127 |
| AVO22491.1 | MH001460_p8 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 5404 | 6513 |