Genomic map of Mycobacterium phage GageAP (MH020236)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MH020236
Definition
Mycobacterium phage GageAP, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
NUCCORE
Length
51904
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
91
%GC
63.46
Number of singletons
4
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AVP41839.1 MH020236_p78 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 47780 48292
AVP41765.1 MH020236_p4 hypothetical protein phrog_226 minor tail protein tail 1 1517 1957
AVP41784.1 MH020236_p23 major tail protein phrog_117 major tail protein tail 1 15307 16155
AVP41799.1 MH020236_p38 hypothetical protein singleton unknown function unknown function 1 29509 29688
AVP41838.1 MH020236_p77 hypothetical protein singleton unknown function unknown function -1 47424 47747
AVP41806.1 MH020236_p45 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 32588 34414
AVP41836.1 MH020236_p75 hypothetical protein phrog_5947 unknown function unknown function -1 46933 47100
AVP41786.1 MH020236_p24 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 16264 17063
AVP41780.1 MH020236_p19 head-to-tail connector complex protein phrog_137 head-tail adaptor Ad1 connector 1 13642 14091
AVP41834.1 MH020236_p73 hypothetical protein phrog_4604 unknown function unknown function -1 46369 46830
AVP41778.1 MH020236_p17 major capsid protein phrog_10 major head protein head and packaging 1 12323 13327
AVP41768.1 MH020236_p7 hypothetical protein phrog_553 minor tail protein tail 1 3583 4284
AVP41833.1 MH020236_p72 hypothetical protein phrog_4285 transposase integration and excision -1 45326 46033
AVP41782.1 MH020236_p21 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 14453 14848
AVP41845.1 MH020236_p84 hypothetical protein phrog_2093 unknown function unknown function -1 49669 49797
AVP41825.1 MH020236_p64 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 41646 42203
AVP41792.1 MH020236_p31 hypothetical protein phrog_981 minor tail protein tail 1 24126 24458
AVP41815.1 MH020236_p54 hypothetical protein phrog_474 phosphofructokinase other -1 38705 39103
AVP41835.1 MH020236_p74 hypothetical protein phrog_6068 unknown function unknown function -1 46827 46940
AVP41776.1 MH020236_p15 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10860 11741
AVP41773.1 MH020236_p12 HNH endonuclease phrog_8660 HNH endonuclease DNA, RNA and nucleotide metabolism 1 7234 7752
AVP41777.1 MH020236_p16 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 11800 12312
AVP41831.1 MH020236_p70 RecB-like exonuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 44175 44975
AVP41772.1 MH020236_p11 lysin B phrog_102 endolysin lysis 1 6246 7214
AVP41800.1 MH020236_p39 integrase phrog_95 integrase integration and excision 1 29769 31271
AVP41813.1 MH020236_p52 hypothetical protein phrog_221 metallo-phosphoesterase other -1 36814 38532
AVP41822.1 MH020236_p61 hypothetical protein phrog_1019 unknown function unknown function -1 40941 41027
AVP41795.1 MH020236_p34 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 26673 28151
AVP41849.1 MH020236_p88 DNA methylase phrog_363 DNA methyltransferase other -1 50431 51129
AVP41781.1 MH020236_p20 hypothetical protein phrog_320 head closure Hc1 connector 1 14091 14453
AVP41828.1 MH020236_p67 hypothetical protein phrog_520 unknown function unknown function -1 43142 43435
AVP41847.1 MH020236_p86 hypothetical protein singleton unknown function unknown function -1 49963 50154
AVP41811.1 MH020236_p50 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 35885 36676
AVP41771.1 MH020236_p10 lysin A phrog_317 endolysin lysis 1 4823 6256
AVP41764.1 MH020236_p3 hypothetical protein phrog_14140 unknown function unknown function 1 1290 1481
AVP41783.1 MH020236_p22 hypothetical protein phrog_123 tail terminator connector 1 14852 15298
AVP41789.1 MH020236_p28 hypothetical protein phrog_1543 minor tail protein tail 1 21646 21828
AVP41785.1 MH020236_p25 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16264 16641
AVP41774.1 MH020236_p13 terminase phrog_9 terminase large subunit head and packaging 1 7736 9424
AVP41805.1 MH020236_p44 hypothetical protein phrog_383 unknown function unknown function -1 32204 32566
AVP41807.1 MH020236_p46 HNH endonuclease phrog_826 HNH endonuclease DNA, RNA and nucleotide metabolism -1 34401 34874
AVP41843.1 MH020236_p82 hypothetical protein phrog_1155 unknown function unknown function -1 49316 49504
AVP41824.1 MH020236_p63 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 41380 41646
AVP41809.1 MH020236_p48 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 35215 35709
AVP41814.1 MH020236_p53 hypothetical protein phrog_1503 unknown function unknown function -1 38529 38708
AVP41802.1 MH020236_p41 hypothetical protein phrog_2035 unknown function unknown function -1 31661 31831
AVP41788.1 MH020236_p27 minor tail protein phrog_106 minor tail protein tail 1 19570 21627
AVP41841.1 MH020236_p80 hypothetical protein phrog_1720 unknown function unknown function -1 48850 49119
AVP41848.1 MH020236_p87 hypothetical protein phrog_28071 unknown function unknown function -1 50282 50413
AVP41808.1 MH020236_p47 hypothetical protein phrog_1781 unknown function unknown function -1 34942 35172
AVP41804.1 MH020236_p43 hypothetical protein phrog_1971 unknown function unknown function -1 31920 32207
AVP41769.1 MH020236_p8 hypothetical protein phrog_1718 tail protein tail 1 4298 4558
AVP41842.1 MH020236_p81 hypothetical protein phrog_1387 unknown function unknown function -1 49116 49319
AVP41810.1 MH020236_p49 hypothetical protein phrog_499 unknown function unknown function -1 35706 35888
AVP41779.1 MH020236_p18 hypothetical protein phrog_1857 head-tail connector protein connector 1 13406 13642
AVP41821.1 MH020236_p60 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 40466 40954
AVP41794.1 MH020236_p33 minor tail protein phrog_346 minor tail protein tail 1 24827 26680
AVP41787.1 MH020236_p26 tape measure protein phrog_305 tail length tape measure protein tail 1 17075 19546
AVP41829.1 MH020236_p68 hypothetical protein phrog_2184 unknown function unknown function -1 43432 43962
AVP41827.1 MH020236_p66 hypothetical protein phrog_1705 unknown function unknown function -1 42999 43145
AVP41763.1 MH020236_p2 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 986 1282
AVP41851.1 MH020236_p90 hypothetical protein phrog_828 unknown function unknown function -1 51306 51509
AVP41775.1 MH020236_p14 portal protein phrog_104 portal protein head and packaging 1 9421 10863
AVP41820.1 MH020236_p59 hypothetical protein phrog_397 unknown function unknown function -1 40187 40447
AVP41818.1 MH020236_p57 hypothetical protein phrog_1783 unknown function unknown function -1 39961 40125
AVP41770.1 MH020236_p9 hypothetical protein phrog_747 unknown function unknown function 1 4566 4823
AVP41762.1 MH020236_p1 hypothetical protein phrog_17889 endonuclease DNA, RNA and nucleotide metabolism 1 540 989
AVP41823.1 MH020236_p62 hypothetical protein phrog_1573 DNA methyltransferase other -1 41024 41383
AVP41817.1 MH020236_p56 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39572 39982
AVP41837.1 MH020236_p76 hypothetical protein phrog_1584 unknown function unknown function -1 47097 47402
AVP41850.1 MH020236_p89 hypothetical protein phrog_2212 unknown function unknown function -1 51126 51224
AVP41846.1 MH020236_p85 hypothetical protein phrog_932 unknown function unknown function -1 49817 49966
AVP41797.1 MH020236_p36 hypothetical protein phrog_1560 unknown function unknown function 1 28574 28786
AVP41793.1 MH020236_p32 hypothetical protein phrog_1397 unknown function unknown function 1 24455 24802
AVP41766.1 MH020236_p5 hypothetical protein phrog_28044 unknown function unknown function 1 2005 2151
AVP41796.1 MH020236_p35 hypothetical protein phrog_644 unknown function unknown function 1 28238 28564
AVP41803.1 MH020236_p42 hypothetical protein phrog_1860 unknown function unknown function -1 31828 31923
AVP41812.1 MH020236_p51 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 36669 36809
AVP41830.1 MH020236_p69 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 43966 44148
AVP41826.1 MH020236_p65 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 42200 43012
AVP41816.1 MH020236_p55 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 39100 39744
AVP41801.1 MH020236_p40 hypothetical protein phrog_1966 unknown function unknown function -1 31392 31664
AVP41832.1 MH020236_p71 hypothetical protein phrog_8167 unknown function unknown function -1 44975 45310
AVP41840.1 MH020236_p79 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 48554 48853
AVP41791.1 MH020236_p30 hypothetical protein phrog_352 minor tail protein tail 1 23668 24114
AVP41819.1 MH020236_p58 hypothetical protein singleton unknown function unknown function -1 40125 40190
AVP41767.1 MH020236_p6 hypothetical protein phrog_1197 tail protein tail 1 2503 3573
AVP41852.1 MH020236_p91 hypothetical protein phrog_21178 unknown function unknown function -1 51566 51859
AVP41798.1 MH020236_p37 hypothetical protein phrog_553 minor tail protein tail 1 28786 29472
AVP41790.1 MH020236_p29 minor tail protein phrog_110 minor tail protein tail 1 21828 23630
AVP41844.1 MH020236_p83 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 49505 49672