| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MH020236 |
Definition |
Mycobacterium phage GageAP, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
51904 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
91 |
%GC |
63.46 |
Number of singletons |
4 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVP41839.1 | MH020236_p78 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 47780 | 48292 |
| AVP41765.1 | MH020236_p4 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1517 | 1957 |
| AVP41784.1 | MH020236_p23 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15307 | 16155 |
| AVP41799.1 | MH020236_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29509 | 29688 |
| AVP41838.1 | MH020236_p77 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47424 | 47747 |
| AVP41806.1 | MH020236_p45 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32588 | 34414 |
| AVP41836.1 | MH020236_p75 | hypothetical protein | phrog_5947 | unknown function | unknown function | -1 | 46933 | 47100 |
| AVP41786.1 | MH020236_p24 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16264 | 17063 |
| AVP41780.1 | MH020236_p19 | head-to-tail connector complex protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13642 | 14091 |
| AVP41834.1 | MH020236_p73 | hypothetical protein | phrog_4604 | unknown function | unknown function | -1 | 46369 | 46830 |
| AVP41778.1 | MH020236_p17 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12323 | 13327 |
| AVP41768.1 | MH020236_p7 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3583 | 4284 |
| AVP41833.1 | MH020236_p72 | hypothetical protein | phrog_4285 | transposase | integration and excision | -1 | 45326 | 46033 |
| AVP41782.1 | MH020236_p21 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14453 | 14848 |
| AVP41845.1 | MH020236_p84 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 49669 | 49797 |
| AVP41825.1 | MH020236_p64 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 41646 | 42203 |
| AVP41792.1 | MH020236_p31 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 24126 | 24458 |
| AVP41815.1 | MH020236_p54 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 38705 | 39103 |
| AVP41835.1 | MH020236_p74 | hypothetical protein | phrog_6068 | unknown function | unknown function | -1 | 46827 | 46940 |
| AVP41776.1 | MH020236_p15 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10860 | 11741 |
| AVP41773.1 | MH020236_p12 | HNH endonuclease | phrog_8660 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 7234 | 7752 |
| AVP41777.1 | MH020236_p16 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11800 | 12312 |
| AVP41831.1 | MH020236_p70 | RecB-like exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44175 | 44975 |
| AVP41772.1 | MH020236_p11 | lysin B | phrog_102 | endolysin | lysis | 1 | 6246 | 7214 |
| AVP41800.1 | MH020236_p39 | integrase | phrog_95 | integrase | integration and excision | 1 | 29769 | 31271 |
| AVP41813.1 | MH020236_p52 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 36814 | 38532 |
| AVP41822.1 | MH020236_p61 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 40941 | 41027 |
| AVP41795.1 | MH020236_p34 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26673 | 28151 |
| AVP41849.1 | MH020236_p88 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 50431 | 51129 |
| AVP41781.1 | MH020236_p20 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 14091 | 14453 |
| AVP41828.1 | MH020236_p67 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43142 | 43435 |
| AVP41847.1 | MH020236_p86 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49963 | 50154 |
| AVP41811.1 | MH020236_p50 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35885 | 36676 |
| AVP41771.1 | MH020236_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 4823 | 6256 |
| AVP41764.1 | MH020236_p3 | hypothetical protein | phrog_14140 | unknown function | unknown function | 1 | 1290 | 1481 |
| AVP41783.1 | MH020236_p22 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14852 | 15298 |
| AVP41789.1 | MH020236_p28 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21646 | 21828 |
| AVP41785.1 | MH020236_p25 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16264 | 16641 |
| AVP41774.1 | MH020236_p13 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7736 | 9424 |
| AVP41805.1 | MH020236_p44 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32204 | 32566 |
| AVP41807.1 | MH020236_p46 | HNH endonuclease | phrog_826 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 34401 | 34874 |
| AVP41843.1 | MH020236_p82 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 49316 | 49504 |
| AVP41824.1 | MH020236_p63 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 41380 | 41646 |
| AVP41809.1 | MH020236_p48 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35215 | 35709 |
| AVP41814.1 | MH020236_p53 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38529 | 38708 |
| AVP41802.1 | MH020236_p41 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31661 | 31831 |
| AVP41788.1 | MH020236_p27 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19570 | 21627 |
| AVP41841.1 | MH020236_p80 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 48850 | 49119 |
| AVP41848.1 | MH020236_p87 | hypothetical protein | phrog_28071 | unknown function | unknown function | -1 | 50282 | 50413 |
| AVP41808.1 | MH020236_p47 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34942 | 35172 |
| AVP41804.1 | MH020236_p43 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31920 | 32207 |
| AVP41769.1 | MH020236_p8 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4298 | 4558 |
| AVP41842.1 | MH020236_p81 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 49116 | 49319 |
| AVP41810.1 | MH020236_p49 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35706 | 35888 |
| AVP41779.1 | MH020236_p18 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 13406 | 13642 |
| AVP41821.1 | MH020236_p60 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40466 | 40954 |
| AVP41794.1 | MH020236_p33 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24827 | 26680 |
| AVP41787.1 | MH020236_p26 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 17075 | 19546 |
| AVP41829.1 | MH020236_p68 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 43432 | 43962 |
| AVP41827.1 | MH020236_p66 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 42999 | 43145 |
| AVP41763.1 | MH020236_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 986 | 1282 |
| AVP41851.1 | MH020236_p90 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 51306 | 51509 |
| AVP41775.1 | MH020236_p14 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9421 | 10863 |
| AVP41820.1 | MH020236_p59 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40187 | 40447 |
| AVP41818.1 | MH020236_p57 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39961 | 40125 |
| AVP41770.1 | MH020236_p9 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4566 | 4823 |
| AVP41762.1 | MH020236_p1 | hypothetical protein | phrog_17889 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 540 | 989 |
| AVP41823.1 | MH020236_p62 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | -1 | 41024 | 41383 |
| AVP41817.1 | MH020236_p56 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39572 | 39982 |
| AVP41837.1 | MH020236_p76 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 47097 | 47402 |
| AVP41850.1 | MH020236_p89 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 51126 | 51224 |
| AVP41846.1 | MH020236_p85 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 49817 | 49966 |
| AVP41797.1 | MH020236_p36 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28574 | 28786 |
| AVP41793.1 | MH020236_p32 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24455 | 24802 |
| AVP41766.1 | MH020236_p5 | hypothetical protein | phrog_28044 | unknown function | unknown function | 1 | 2005 | 2151 |
| AVP41796.1 | MH020236_p35 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28238 | 28564 |
| AVP41803.1 | MH020236_p42 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31828 | 31923 |
| AVP41812.1 | MH020236_p51 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36669 | 36809 |
| AVP41830.1 | MH020236_p69 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 43966 | 44148 |
| AVP41826.1 | MH020236_p65 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42200 | 43012 |
| AVP41816.1 | MH020236_p55 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39100 | 39744 |
| AVP41801.1 | MH020236_p40 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31392 | 31664 |
| AVP41832.1 | MH020236_p71 | hypothetical protein | phrog_8167 | unknown function | unknown function | -1 | 44975 | 45310 |
| AVP41840.1 | MH020236_p79 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48554 | 48853 |
| AVP41791.1 | MH020236_p30 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23668 | 24114 |
| AVP41819.1 | MH020236_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40125 | 40190 |
| AVP41767.1 | MH020236_p6 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2503 | 3573 |
| AVP41852.1 | MH020236_p91 | hypothetical protein | phrog_21178 | unknown function | unknown function | -1 | 51566 | 51859 |
| AVP41798.1 | MH020236_p37 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 28786 | 29472 |
| AVP41790.1 | MH020236_p29 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21828 | 23630 |
| AVP41844.1 | MH020236_p83 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 49505 | 49672 |