Genomic map of Mycobacterium phage Jsquared (MH020237)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MH020237
Definition
Mycobacterium phage Jsquared, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
NUCCORE
Length
52967
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
101
%GC
62.58
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AVP41935.1 MH020237_p94 hypothetical protein phrog_9458 unknown function unknown function -1 49423 49647
AVP41876.1 MH020237_p27 hypothetical protein phrog_352 minor tail protein tail 1 20955 21398
AVP41926.1 MH020237_p83 hypothetical protein phrog_5371 unknown function unknown function -1 46171 46389
AVP41894.1 MH020237_p47 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 32070 32621
AVP41880.1 MH020237_p32 hypothetical protein phrog_2570 unknown function unknown function 1 24368 24562
AVP41922.1 MH020237_p79 hypothetical protein phrog_2869 unknown function unknown function -1 45252 45434
AVP41904.1 MH020237_p60 hypothetical protein phrog_10918 unknown function unknown function -1 38628 38750
AVP41888.1 MH020237_p41 hypothetical protein phrog_896 unknown function unknown function -1 28276 28494
AVP41861.1 MH020237_p10 terminase phrog_9 terminase large subunit head and packaging 1 6331 8112
AVP41903.1 MH020237_p57 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 37611 38243
AVP41899.1 MH020237_p53 metallophosphoesterase phrog_221 metallo-phosphoesterase other -1 35908 36675
AVP41895.1 MH020237_p49 hypothetical protein phrog_2046 unknown function unknown function -1 34682 34885
AVP41918.1 MH020237_p75 hypothetical protein phrog_642 unknown function unknown function -1 42751 43035
AVP41930.1 MH020237_p87 hypothetical protein phrog_421 unknown function unknown function -1 47057 47818
AVP41860.1 MH020237_p9 lysin B phrog_102 endolysin lysis 1 5553 6317
AVP41912.1 MH020237_p69 hypothetical protein phrog_542 unknown function unknown function -1 40631 40783
AVP41886.1 MH020237_p39 hypothetical protein phrog_3283 unknown function unknown function -1 27879 28106
AVP41934.1 MH020237_p93 hypothetical protein phrog_12399 unknown function unknown function -1 49310 49423
AVP41858.1 MH020237_p7 lysin A phrog_317 endolysin lysis 1 4286 5164
AVP41865.1 MH020237_p14 major capsid protein phrog_10 major head protein head and packaging 1 11031 11981
AVP41871.1 MH020237_p21 major tail subunit phrog_117 major tail protein tail 1 13941 14531
AVP41931.1 MH020237_p90 hypothetical protein phrog_2223 unknown function unknown function -1 48240 48518
AVP41909.1 MH020237_p66 hypothetical protein phrog_3369 unknown function unknown function -1 39961 40119
AVP41920.1 MH020237_p77 hypothetical protein phrog_1562 unknown function unknown function -1 43909 44346
AVP41933.1 MH020237_p92 hypothetical protein phrog_586 unknown function unknown function -1 48933 49313
AVP41857.1 MH020237_p6 minor tail protein phrog_1260 minor tail protein tail 1 3204 4145
AVP41943.1 MH020237_p20 hypothetical protein phrog_123 tail terminator connector 1 13491 13910
AVP41941.1 MH020237_p100 hypothetical protein phrog_1445 unknown function unknown function -1 51341 51418
AVP41944.1 MH020237_p22 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 14730 15553
AVP41887.1 MH020237_p40 hypothetical protein phrog_1545 unknown function unknown function -1 28106 28276
AVP41923.1 MH020237_p80 hypothetical protein phrog_14127 unknown function unknown function -1 45436 45693
AVP41942.1 MH020237_p101 hypothetical protein phrog_1676 unknown function unknown function -1 51448 51747
AVP41884.1 MH020237_p37 hypothetical protein phrog_383 unknown function unknown function -1 27152 27601
AVP41875.1 MH020237_p26 minor tail protein phrog_110 minor tail protein tail 1 19089 20879
AVP41953.1 MH020237_p58 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38071 38463
AVP41929.1 MH020237_p86 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 46782 47057
AVP41908.1 MH020237_p64 hypothetical protein phrog_1498 unknown function unknown function -1 39438 39590
AVP41916.1 MH020237_p73 hypothetical protein phrog_520 unknown function unknown function -1 42292 42531
AVP41902.1 MH020237_p56 hypothetical protein singleton unknown function unknown function -1 37402 37611
AVP41853.1 MH020237_p1 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 402 1091
AVP41864.1 MH020237_p13 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 10477 11001
AVP41885.1 MH020237_p38 hypothetical protein phrog_2099 unknown function unknown function -1 27598 27882
AVP41901.1 MH020237_p55 NrdH-like glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 37133 37405
AVP41919.1 MH020237_p76 RecB-like exonuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 43043 43912
AVP41868.1 MH020237_p17 hypothetical protein phrog_830 head-tail connector protein connector 1 12584 12778
AVP41939.1 MH020237_p98 hypothetical protein phrog_519 unknown function unknown function -1 50419 50580
AVP41924.1 MH020237_p81 hypothetical protein phrog_3963 unknown function unknown function -1 45690 45959
AVP41914.1 MH020237_p71 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41198 42004
AVP41892.1 MH020237_p45 hypothetical protein phrog_690 unknown function unknown function -1 31022 31228
AVP41854.1 MH020237_p2 hypothetical protein phrog_8314 unknown function unknown function 1 1072 2079
AVP41891.1 MH020237_p44 hypothetical protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 30618 31025
AVP41947.1 MH020237_p48 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 32633 34681
AVP41915.1 MH020237_p72 hypothetical protein phrog_2903 unknown function unknown function -1 42006 42281
AVP41911.1 MH020237_p68 hypothetical protein phrog_397 unknown function unknown function -1 40310 40546
AVP41870.1 MH020237_p19 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 13146 13481
AVP41936.1 MH020237_p95 hypothetical protein phrog_1946 unknown function unknown function -1 49644 49844
AVP41910.1 MH020237_p67 hypothetical protein phrog_10332 unknown function unknown function -1 40116 40310
AVP41905.1 MH020237_p61 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 38770 39264
AVP41948.1 MH020237_p59 hypothetical protein phrog_10806 unknown function unknown function -1 38453 38644
AVP41869.1 MH020237_p18 hypothetical protein phrog_320 head closure Hc1 connector 1 12778 13146
AVP41940.1 MH020237_p99 hypothetical protein phrog_1392 unknown function unknown function -1 50589 51308
AVP41859.1 MH020237_p8 holin phrog_526 holin lysis 1 5161 5556
AVP41945.1 MH020237_p30 hypothetical protein phrog_356 minor tail protein tail 1 23470 24069
AVP41881.1 MH020237_p33 integrase phrog_1 integrase integration and excision -1 24548 25672
AVP41893.1 MH020237_p46 ThyX-like thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 31240 31938
AVP41950.1 MH020237_p88 hypothetical protein phrog_855 unknown function unknown function -1 47821 47958
AVP41907.1 MH020237_p63 hypothetical protein singleton unknown function unknown function -1 39355 39441
AVP41882.1 MH020237_p34 hypothetical protein phrog_733 excisionase integration and excision 1 26083 26511
AVP41856.1 MH020237_p5 hypothetical protein phrog_226 minor tail protein tail 1 2660 3127
AVP41949.1 MH020237_p65 hypothetical protein phrog_289 GTP-binding domain other -1 39587 39964
AVP41946.1 MH020237_p35 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision -1 26620 26790
AVP41951.1 MH020237_p89 hypothetical protein phrog_828 unknown function unknown function -1 47969 48187
AVP41906.1 MH020237_p62 hypothetical protein phrog_2187 unknown function unknown function -1 39215 39358
AVP41952.1 MH020237_p4 hypothetical protein phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2327 2623
AVP41913.1 MH020237_p70 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision -1 40780 41166
AVP41883.1 MH020237_p36 hypothetical protein phrog_229 MazG-like pyrophosphatase other -1 26808 27152
AVP41890.1 MH020237_p43 hypothetical protein phrog_4326 unknown function unknown function -1 30322 30618
AVP41878.1 MH020237_p29 minor tail protein phrog_737 minor tail protein tail 1 21719 23470
AVP41921.1 MH020237_p78 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 44402 44953
AVP41927.1 MH020237_p84 hypothetical protein phrog_4569 unknown function unknown function -1 46389 46649
AVP41866.1 MH020237_p15 hypothetical protein phrog_748 head-tail connector protein connector 1 12051 12206
AVP41872.1 MH020237_p23 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 14730 15134
AVP41873.1 MH020237_p24 tape measure protein phrog_305 tail length tape measure protein tail 1 15543 18056
AVP41855.1 MH020237_p3 hypothetical protein phrog_8551 unknown function unknown function 1 2079 2330
AVP41897.1 MH020237_p51 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 35051 35755
AVP41937.1 MH020237_p96 hypothetical protein phrog_8476 unknown function unknown function -1 49844 50134
AVP41877.1 MH020237_p28 hypothetical protein phrog_404 minor tail protein tail 1 21395 21718
AVP41862.1 MH020237_p11 portal protein phrog_104 portal protein head and packaging 1 8109 9566
AVP41917.1 MH020237_p74 hypothetical protein phrog_666 unknown function unknown function -1 42560 42754
AVP41889.1 MH020237_p42 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 28527 30314
AVP41896.1 MH020237_p50 hypothetical protein phrog_499 unknown function unknown function -1 34882 35067
AVP41928.1 MH020237_p85 hypothetical protein phrog_1477 unknown function unknown function -1 46651 46782
AVP41900.1 MH020237_p54 hypothetical protein phrog_1167 phosphofructokinase other -1 36672 37136
AVP41938.1 MH020237_p97 hypothetical protein phrog_3207 unknown function unknown function -1 50143 50409
AVP41932.1 MH020237_p91 hypothetical protein phrog_3256 unknown function unknown function -1 48548 48907
AVP41867.1 MH020237_p16 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 12210 12587
AVP41863.1 MH020237_p12 capsid maturation protease phrog_193 head maturation protease head and packaging 1 9677 10423
AVP41879.1 MH020237_p31 hypothetical protein phrog_2269 unknown function unknown function 1 24081 24293
AVP41925.1 MH020237_p82 hypothetical protein phrog_1875 unknown function unknown function -1 45956 46162
AVP41874.1 MH020237_p25 minor tail protein phrog_106 minor tail protein tail 1 18082 19092
AVP41898.1 MH020237_p52 hypothetical protein phrog_2436 unknown function unknown function -1 35752 35904