| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MH020239 |
Definition |
Mycobacterium phage Naca, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
51594 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
87 |
%GC |
59.83 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVP42066.1 | MH020239_p27 | minor tail protein | phrog_2683 | minor tail protein | tail | 1 | 22398 | 23780 |
| AVP42047.1 | MH020239_p8 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6070 | 7848 |
| AVP42116.1 | MH020239_p80 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 46912 | 47061 |
| AVP42109.1 | MH020239_p71 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44325 | 44855 |
| AVP42111.1 | MH020239_p74 | hypothetical protein | phrog_5066 | unknown function | unknown function | -1 | 45639 | 45899 |
| AVP42107.1 | MH020239_p69 | RecB-like exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43210 | 44025 |
| AVP42115.1 | MH020239_p78 | hypothetical protein | phrog_6649 | unknown function | unknown function | -1 | 46587 | 46793 |
| AVP42071.1 | MH020239_p32 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 26715 | 27224 |
| AVP42108.1 | MH020239_p70 | hypothetical protein | phrog_5957 | unknown function | unknown function | -1 | 44022 | 44309 |
| AVP42120.1 | MH020239_p84 | hypothetical protein | phrog_3906 | unknown function | unknown function | -1 | 48109 | 48942 |
| AVP42123.1 | MH020239_p87 | hypothetical protein | phrog_3471 | unknown function | unknown function | -1 | 49959 | 50210 |
| AVP42053.1 | MH020239_p14 | hypothetical protein | phrog_2348 | unknown function | unknown function | 1 | 12093 | 12236 |
| AVP42078.1 | MH020239_p39 | hypothetical protein | phrog_19744 | unknown function | unknown function | -1 | 30778 | 30894 |
| AVP42068.1 | MH020239_p29 | hypothetical protein | phrog_1712 | unknown function | unknown function | -1 | 24174 | 24473 |
| AVP42090.1 | MH020239_p51 | hypothetical protein | phrog_5242 | unknown function | unknown function | -1 | 37704 | 37973 |
| AVP42092.1 | MH020239_p53 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38254 | 38823 |
| AVP42075.1 | MH020239_p36 | hypothetical protein | phrog_5282 | unknown function | unknown function | -1 | 28056 | 28340 |
| AVP42126.1 | MH020239_p72 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 45119 | 45403 |
| AVP42100.1 | MH020239_p62 | hypothetical protein | phrog_8372 | unknown function | unknown function | -1 | 40643 | 40816 |
| AVP42086.1 | MH020239_p47 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35431 | 36054 |
| AVP42058.1 | MH020239_p20 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 14284 | 14754 |
| AVP42055.1 | MH020239_p16 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 12595 | 13008 |
| AVP42097.1 | MH020239_p59 | hypothetical protein | phrog_4539 | unknown function | unknown function | -1 | 40323 | 40421 |
| AVP42077.1 | MH020239_p38 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 28828 | 30726 |
| AVP42113.1 | MH020239_p76 | hypothetical protein | phrog_5561 | unknown function | unknown function | -1 | 46067 | 46246 |
| AVP42059.1 | MH020239_p19 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 14284 | 15167 |
| AVP42106.1 | MH020239_p68 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 42904 | 43206 |
| AVP42125.1 | MH020239_p54 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38726 | 39136 |
| AVP42060.1 | MH020239_p21 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 15172 | 18438 |
| AVP42117.1 | MH020239_p81 | hypothetical protein | phrog_9830 | unknown function | unknown function | -1 | 47063 | 47209 |
| AVP42074.1 | MH020239_p35 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 27620 | 28066 |
| AVP42102.1 | MH020239_p64 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41473 | 42279 |
| AVP42091.1 | MH020239_p52 | hypothetical protein | phrog_5270 | unknown function | unknown function | -1 | 37970 | 38257 |
| AVP42119.1 | MH020239_p83 | hypothetical protein | phrog_5927 | unknown function | unknown function | -1 | 47781 | 48062 |
| AVP42052.1 | MH020239_p13 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 11722 | 12096 |
| AVP42118.1 | MH020239_p82 | hypothetical protein | phrog_2059 | anti-restriction protein | moron, auxiliary metabolic gene and host takeover | -1 | 47217 | 47759 |
| AVP42056.1 | MH020239_p17 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 13009 | 13416 |
| AVP42096.1 | MH020239_p58 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39869 | 40333 |
| AVP42085.1 | MH020239_p46 | hypothetical protein | phrog_1454 | unknown function | unknown function | -1 | 35107 | 35412 |
| AVP42061.1 | MH020239_p22 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18502 | 19515 |
| AVP42057.1 | MH020239_p18 | major tail protein | phrog_117 | major tail protein | tail | 1 | 13432 | 14262 |
| AVP42124.1 | MH020239_p1 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 505 | 804 |
| AVP42098.1 | MH020239_p60 | hypothetical protein | phrog_6893 | unknown function | unknown function | -1 | 40414 | 40497 |
| AVP42070.1 | MH020239_p31 | hypothetical protein | phrog_733 | excisionase | integration and excision | 1 | 26187 | 26615 |
| AVP42076.1 | MH020239_p37 | hypothetical protein | phrog_2650 | unknown function | unknown function | -1 | 28337 | 28780 |
| AVP42049.1 | MH020239_p10 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9278 | 10117 |
| AVP42103.1 | MH020239_p65 | hypothetical protein | phrog_2903 | unknown function | unknown function | -1 | 42266 | 42496 |
| AVP42095.1 | MH020239_p57 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 39505 | 39771 |
| AVP42048.1 | MH020239_p9 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 7848 | 9281 |
| AVP42088.1 | MH020239_p49 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 36818 | 37309 |
| AVP42043.1 | MH020239_p4 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2357 | 4141 |
| AVP42105.1 | MH020239_p67 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42675 | 42929 |
| AVP42084.1 | MH020239_p45 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 34937 | 35107 |
| AVP42064.1 | MH020239_p25 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 21782 | 22084 |
| AVP42099.1 | MH020239_p61 | hypothetical protein | phrog_1498 | unknown function | unknown function | -1 | 40494 | 40646 |
| AVP42069.1 | MH020239_p30 | integrase | phrog_95 | integrase | integration and excision | -1 | 24470 | 25915 |
| AVP42121.1 | MH020239_p85 | hypothetical protein | phrog_6093 | unknown function | unknown function | -1 | 49031 | 49186 |
| AVP42073.1 | MH020239_p34 | hypothetical protein | phrog_980 | unknown function | unknown function | -1 | 27354 | 27563 |
| AVP42087.1 | MH020239_p48 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 36051 | 36821 |
| AVP42041.1 | MH020239_p2 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 842 | 1291 |
| AVP42104.1 | MH020239_p66 | hypothetical protein | phrog_18682 | unknown function | unknown function | -1 | 42496 | 42678 |
| AVP42046.1 | MH020239_p7 | lysin B | phrog_102 | endolysin | lysis | 1 | 5264 | 6073 |
| AVP42112.1 | MH020239_p75 | hypothetical protein | phrog_6322 | unknown function | unknown function | -1 | 45902 | 46054 |
| AVP42072.1 | MH020239_p33 | hypothetical protein | phrog_15643 | unknown function | unknown function | -1 | 27211 | 27354 |
| AVP42045.1 | MH020239_p6 | hypothetical protein | phrog_774 | unknown function | unknown function | 1 | 5055 | 5267 |
| AVP42122.1 | MH020239_p86 | hypothetical protein | phrog_6340 | unknown function | unknown function | -1 | 49189 | 49602 |
| AVP42127.1 | MH020239_p79 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 46790 | 46930 |
| AVP42082.1 | MH020239_p43 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 32299 | 32823 |
| AVP42050.1 | MH020239_p11 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10140 | 10685 |
| AVP42054.1 | MH020239_p15 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 12233 | 12595 |
| AVP42062.1 | MH020239_p23 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19512 | 21311 |
| AVP42110.1 | MH020239_p73 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 45400 | 45642 |
| AVP42063.1 | MH020239_p24 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 21325 | 21789 |
| AVP42093.1 | MH020239_p55 | hypothetical protein | phrog_5993 | unknown function | unknown function | -1 | 39138 | 39389 |
| AVP42051.1 | MH020239_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 10712 | 11653 |
| AVP42042.1 | MH020239_p3 | hypothetical protein | phrog_1260 | minor tail protein | tail | 1 | 1398 | 2360 |
| AVP42081.1 | MH020239_p42 | ThyX-like thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 31527 | 32243 |
| AVP42065.1 | MH020239_p26 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 22111 | 22401 |
| AVP42114.1 | MH020239_p77 | hypothetical protein | phrog_5476 | unknown function | unknown function | -1 | 46243 | 46590 |
| AVP42101.1 | MH020239_p63 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 40813 | 41202 |
| AVP42080.1 | MH020239_p41 | hypothetical protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 31271 | 31534 |
| AVP42094.1 | MH020239_p56 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39386 | 39517 |
| AVP42089.1 | MH020239_p50 | hypothetical protein | phrog_4195 | unknown function | unknown function | -1 | 37306 | 37707 |
| AVP42067.1 | MH020239_p28 | hypothetical protein | phrog_2235 | minor tail protein | tail | 1 | 23788 | 24114 |
| AVP42079.1 | MH020239_p40 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 30894 | 31274 |
| AVP42083.1 | MH020239_p44 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 32849 | 34927 |
| AVP42044.1 | MH020239_p5 | lysin A | phrog_1512 | endolysin | lysis | 1 | 4378 | 5058 |