Genomic map of Mycobacterium phage Misha28 (MH020242)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MH020242
Definition
Mycobacterium phage Misha28, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus.
DB of origin
NUCCORE
Length
57455
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
93
%GC
62.94
Number of singletons
6
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AVP42333.1 MH020242_p29 hypothetical protein phrog_1172 unknown function unknown function 1 25746 25898
AVP42343.1 MH020242_p40 integrase phrog_1 integrase integration and excision 1 30866 32137
AVP42352.1 MH020242_p52 hypothetical protein phrog_9601 unknown function unknown function 1 36996 37259
AVP42312.1 MH020242_p8 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 5931 6302
AVP42327.1 MH020242_p23 hypothetical protein phrog_2005 minor tail protein tail 1 23233 23487
AVP42386.1 MH020242_p89 hypothetical protein phrog_1385 unknown function unknown function 1 54702 54944
AVP42380.1 MH020242_p82 hypothetical protein phrog_1311 unknown function unknown function 1 51166 51324
AVP42320.1 MH020242_p16 minor tail protein phrog_106 minor tail protein tail 1 12884 14593
AVP42332.1 MH020242_p28 hypothetical protein phrog_932 unknown function unknown function 1 25603 25749
AVP42329.1 MH020242_p25 hypothetical protein phrog_754 minor tail protein tail 1 24136 24960
AVP42362.1 MH020242_p63 hypothetical protein phrog_10545 unknown function unknown function 1 39970 40134
AVP42383.1 MH020242_p86 hypothetical protein phrog_908 unknown function unknown function 1 52818 53723
AVP42331.1 MH020242_p27 hypothetical protein phrog_411 unknown function unknown function 1 25312 25596
AVP42346.1 MH020242_p44 hypothetical protein phrog_63 anti-repressor Ant transcription regulation 1 33883 34743
AVP42347.1 MH020242_p45 hypothetical protein singleton unknown function unknown function 1 34746 34958
AVP42342.1 MH020242_p39 hypothetical protein phrog_1839 unknown function unknown function 1 30386 30478
AVP42328.1 MH020242_p24 hypothetical protein phrog_2012 minor tail protein tail 1 23501 24139
AVP42374.1 MH020242_p76 hypothetical protein phrog_20215 unknown function unknown function 1 49081 49392
AVP42377.1 MH020242_p79 hypothetical protein phrog_11976 unknown function unknown function 1 49865 50407
AVP42378.1 MH020242_p80 hypothetical protein phrog_11559 unknown function unknown function 1 50404 50607
AVP42379.1 MH020242_p81 hypothetical protein phrog_2021 unknown function unknown function 1 50604 50960
AVP42330.1 MH020242_p26 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 24966 25163
AVP42355.1 MH020242_p55 hypothetical protein phrog_32018 unknown function unknown function 1 37938 38075
AVP42391.1 MH020242_p83 hypothetical protein phrog_2451 unknown function unknown function 1 51321 51461
AVP42349.1 MH020242_p48 hypothetical protein phrog_23722 unknown function unknown function 1 35386 35730
AVP42314.1 MH020242_p10 hypothetical protein phrog_1929 head-tail connector protein connector 1 6635 6961
AVP42311.1 MH020242_p7 major capsid protein phrog_10 major head protein head and packaging 1 5011 5919
AVP42348.1 MH020242_p47 hypothetical protein phrog_22947 unknown function unknown function 1 35200 35382
AVP42365.1 MH020242_p66 hypothetical protein phrog_2131 unknown function unknown function 1 41992 42477
AVP42375.1 MH020242_p77 hypothetical protein phrog_14378 unknown function unknown function 1 49385 49699
AVP42366.1 MH020242_p67 hypothetical protein phrog_4387 unknown function unknown function 1 42474 42728
AVP42356.1 MH020242_p56 hypothetical protein phrog_9420 unknown function unknown function 1 38072 38437
AVP42358.1 MH020242_p58 hypothetical protein phrog_14059 unknown function unknown function 1 38784 38993
AVP42325.1 MH020242_p21 hypothetical protein phrog_2106 minor tail protein tail 1 21678 22850
AVP42390.1 MH020242_p93 glycosyltransferase phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 56752 57363
AVP42322.1 MH020242_p18 minor tail protein phrog_732 minor tail protein tail 1 16428 17276
AVP42368.1 MH020242_p69 hypothetical protein phrog_10863 unknown function unknown function 1 43099 43311
AVP42373.1 MH020242_p75 DNA methylase phrog_67 DNA methyltransferase other 1 46524 48974
AVP42334.1 MH020242_p30 hypothetical protein phrog_747 unknown function unknown function 1 25975 26208
AVP42318.1 MH020242_p13 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8399 9335
AVP42384.1 MH020242_p87 hypothetical protein singleton unknown function unknown function 1 53900 54304
AVP42385.1 MH020242_p88 hypothetical protein phrog_1186 unknown function unknown function 1 54301 54705
AVP42323.1 MH020242_p19 minor tail protein phrog_346 minor tail protein tail 1 17273 19798
AVP42367.1 MH020242_p68 hypothetical protein phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 42725 43102
AVP42344.1 MH020242_p42 immunity repressor phrog_2838 transcriptional repressor transcription regulation -1 32807 33394
AVP42361.1 MH020242_p62 hypothetical protein phrog_4702 unknown function unknown function 1 39818 39973
AVP42335.1 MH020242_p31 lysin A phrog_700 endolysin lysis 1 26205 27407
AVP42307.1 MH020242_p3 terminase large subunit phrog_2 terminase large subunit head and packaging 1 674 2161
AVP42351.1 MH020242_p50 hypothetical protein phrog_1816 unknown function unknown function 1 36034 36300
AVP42387.1 MH020242_p90 hypothetical protein phrog_2057 unknown function unknown function 1 54937 55098
AVP42381.1 MH020242_p84 hypothetical protein phrog_1882 unknown function unknown function 1 51490 52407
AVP42319.1 MH020242_p15 tape measure protein phrog_1942 tail length tape measure protein tail 1 9353 12883
AVP42369.1 MH020242_p70 hypothetical protein phrog_6650 unknown function unknown function 1 43308 43703
AVP42359.1 MH020242_p59 hypothetical protein singleton unknown function unknown function 1 38990 39247
AVP42345.1 MH020242_p43 hypothetical protein phrog_6463 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 33610 33828
AVP42326.1 MH020242_p22 hypothetical protein phrog_240 head protein head and packaging 1 22869 23210
AVP42371.1 MH020242_p72 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 45214 45801
AVP42310.1 MH020242_p6 scaffolding protein phrog_4638 head scaffolding protein head and packaging 1 4412 4948
AVP42313.1 MH020242_p9 hypothetical protein phrog_763 head-tail adaptor connector 1 6299 6628
AVP42340.1 MH020242_p36 DNA polymerase III subunit phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29267 30088
AVP42336.1 MH020242_p32 lysin B phrog_102 endolysin lysis 1 27407 28408
AVP42350.1 MH020242_p49 hypothetical protein phrog_3507 unknown function unknown function 1 35723 36037
AVP42354.1 MH020242_p54 hypothetical protein phrog_4981 unknown function unknown function 1 37615 37941
AVP42316.1 MH020242_p12 major tail protein phrog_476 major tail protein tail 1 7464 8273
AVP42393.1 MH020242_p46 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 34969 35193
AVP42309.1 MH020242_p5 capsid maturation protease phrog_193 head maturation protease head and packaging 1 3607 4332
AVP42360.1 MH020242_p60 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 39332 39664
AVP42392.1 MH020242_p37 hypothetical protein singleton unknown function unknown function 1 30104 30175
AVP42305.1 MH020242_p1 HNH endonuclease phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 42 374
AVP42324.1 MH020242_p20 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 19795 21675
AVP42306.1 MH020242_p2 terminase small subunit phrog_4479 terminase small subunit head and packaging 1 448 702
AVP42370.1 MH020242_p71 DNA methylase phrog_116 DNA methyltransferase other 1 43703 45217
AVP42341.1 MH020242_p38 hypothetical protein phrog_1791 unknown function unknown function 1 30172 30393
AVP42396.1 MH020242_p41 hypothetical protein phrog_1948 unknown function unknown function -1 32142 32615
AVP42339.1 MH020242_p35 hypothetical protein phrog_2004 unknown function unknown function 1 29047 29280
AVP42395.1 MH020242_p73 hypothetical protein phrog_2001 unknown function unknown function 1 45868 45993
AVP42308.1 MH020242_p4 portal protein phrog_104 portal protein head and packaging 1 2202 3623
AVP42376.1 MH020242_p78 hypothetical protein singleton unknown function unknown function 1 49692 49868
AVP42315.1 MH020242_p11 hypothetical protein phrog_813 head-tail adaptor connector 1 6951 7355
AVP42357.1 MH020242_p57 WhiB family transcription factor phrog_1333 unknown function unknown function 1 38434 38787
AVP42363.1 MH020242_p64 hypothetical protein phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 40131 40985
AVP42353.1 MH020242_p53 hypothetical protein phrog_658 unknown function unknown function 1 37256 37618
AVP42317.1 MH020242_p14 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8399 8950
AVP42372.1 MH020242_p74 hypothetical protein phrog_464 unknown function unknown function 1 45990 46421
AVP42389.1 MH020242_p92 hypothetical protein phrog_1693 unknown function unknown function 1 56561 56755
AVP42382.1 MH020242_p85 hypothetical protein phrog_4296 unknown function unknown function 1 52404 52775
AVP42388.1 MH020242_p91 glycosyltransferase phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 55106 56542
AVP42338.1 MH020242_p34 hypothetical protein phrog_404 minor tail protein tail 1 28648 29022
AVP42337.1 MH020242_p33 holin phrog_443 holin lysis 1 28418 28651
AVP42394.1 MH020242_p61 hypothetical protein singleton unknown function unknown function 1 39651 39821
AVP42321.1 MH020242_p17 minor tail protein phrog_110 minor tail protein tail 1 14677 16386
AVP42397.1 MH020242_p51 hypothetical protein phrog_1797 unknown function unknown function 1 36297 36938
AVP42364.1 MH020242_p65 hypothetical protein phrog_3657 unknown function unknown function 1 40979 41995