| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MH020242 |
Definition |
Mycobacterium phage Misha28, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
NUCCORE |
Length |
57455 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
93 |
%GC |
62.94 |
Number of singletons |
6 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVP42333.1 | MH020242_p29 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 25746 | 25898 |
| AVP42343.1 | MH020242_p40 | integrase | phrog_1 | integrase | integration and excision | 1 | 30866 | 32137 |
| AVP42352.1 | MH020242_p52 | hypothetical protein | phrog_9601 | unknown function | unknown function | 1 | 36996 | 37259 |
| AVP42312.1 | MH020242_p8 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 5931 | 6302 |
| AVP42327.1 | MH020242_p23 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23233 | 23487 |
| AVP42386.1 | MH020242_p89 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 54702 | 54944 |
| AVP42380.1 | MH020242_p82 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 51166 | 51324 |
| AVP42320.1 | MH020242_p16 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 12884 | 14593 |
| AVP42332.1 | MH020242_p28 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25603 | 25749 |
| AVP42329.1 | MH020242_p25 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24136 | 24960 |
| AVP42362.1 | MH020242_p63 | hypothetical protein | phrog_10545 | unknown function | unknown function | 1 | 39970 | 40134 |
| AVP42383.1 | MH020242_p86 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 52818 | 53723 |
| AVP42331.1 | MH020242_p27 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25312 | 25596 |
| AVP42346.1 | MH020242_p44 | hypothetical protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 33883 | 34743 |
| AVP42347.1 | MH020242_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34746 | 34958 |
| AVP42342.1 | MH020242_p39 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30386 | 30478 |
| AVP42328.1 | MH020242_p24 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 23501 | 24139 |
| AVP42374.1 | MH020242_p76 | hypothetical protein | phrog_20215 | unknown function | unknown function | 1 | 49081 | 49392 |
| AVP42377.1 | MH020242_p79 | hypothetical protein | phrog_11976 | unknown function | unknown function | 1 | 49865 | 50407 |
| AVP42378.1 | MH020242_p80 | hypothetical protein | phrog_11559 | unknown function | unknown function | 1 | 50404 | 50607 |
| AVP42379.1 | MH020242_p81 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 50604 | 50960 |
| AVP42330.1 | MH020242_p26 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24966 | 25163 |
| AVP42355.1 | MH020242_p55 | hypothetical protein | phrog_32018 | unknown function | unknown function | 1 | 37938 | 38075 |
| AVP42391.1 | MH020242_p83 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 51321 | 51461 |
| AVP42349.1 | MH020242_p48 | hypothetical protein | phrog_23722 | unknown function | unknown function | 1 | 35386 | 35730 |
| AVP42314.1 | MH020242_p10 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6635 | 6961 |
| AVP42311.1 | MH020242_p7 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 5011 | 5919 |
| AVP42348.1 | MH020242_p47 | hypothetical protein | phrog_22947 | unknown function | unknown function | 1 | 35200 | 35382 |
| AVP42365.1 | MH020242_p66 | hypothetical protein | phrog_2131 | unknown function | unknown function | 1 | 41992 | 42477 |
| AVP42375.1 | MH020242_p77 | hypothetical protein | phrog_14378 | unknown function | unknown function | 1 | 49385 | 49699 |
| AVP42366.1 | MH020242_p67 | hypothetical protein | phrog_4387 | unknown function | unknown function | 1 | 42474 | 42728 |
| AVP42356.1 | MH020242_p56 | hypothetical protein | phrog_9420 | unknown function | unknown function | 1 | 38072 | 38437 |
| AVP42358.1 | MH020242_p58 | hypothetical protein | phrog_14059 | unknown function | unknown function | 1 | 38784 | 38993 |
| AVP42325.1 | MH020242_p21 | hypothetical protein | phrog_2106 | minor tail protein | tail | 1 | 21678 | 22850 |
| AVP42390.1 | MH020242_p93 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56752 | 57363 |
| AVP42322.1 | MH020242_p18 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16428 | 17276 |
| AVP42368.1 | MH020242_p69 | hypothetical protein | phrog_10863 | unknown function | unknown function | 1 | 43099 | 43311 |
| AVP42373.1 | MH020242_p75 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 46524 | 48974 |
| AVP42334.1 | MH020242_p30 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 25975 | 26208 |
| AVP42318.1 | MH020242_p13 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8399 | 9335 |
| AVP42384.1 | MH020242_p87 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53900 | 54304 |
| AVP42385.1 | MH020242_p88 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 54301 | 54705 |
| AVP42323.1 | MH020242_p19 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 17273 | 19798 |
| AVP42367.1 | MH020242_p68 | hypothetical protein | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 42725 | 43102 |
| AVP42344.1 | MH020242_p42 | immunity repressor | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 32807 | 33394 |
| AVP42361.1 | MH020242_p62 | hypothetical protein | phrog_4702 | unknown function | unknown function | 1 | 39818 | 39973 |
| AVP42335.1 | MH020242_p31 | lysin A | phrog_700 | endolysin | lysis | 1 | 26205 | 27407 |
| AVP42307.1 | MH020242_p3 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 674 | 2161 |
| AVP42351.1 | MH020242_p50 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 36034 | 36300 |
| AVP42387.1 | MH020242_p90 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 54937 | 55098 |
| AVP42381.1 | MH020242_p84 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 51490 | 52407 |
| AVP42319.1 | MH020242_p15 | tape measure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9353 | 12883 |
| AVP42369.1 | MH020242_p70 | hypothetical protein | phrog_6650 | unknown function | unknown function | 1 | 43308 | 43703 |
| AVP42359.1 | MH020242_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38990 | 39247 |
| AVP42345.1 | MH020242_p43 | hypothetical protein | phrog_6463 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 33610 | 33828 |
| AVP42326.1 | MH020242_p22 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22869 | 23210 |
| AVP42371.1 | MH020242_p72 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 45214 | 45801 |
| AVP42310.1 | MH020242_p6 | scaffolding protein | phrog_4638 | head scaffolding protein | head and packaging | 1 | 4412 | 4948 |
| AVP42313.1 | MH020242_p9 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6299 | 6628 |
| AVP42340.1 | MH020242_p36 | DNA polymerase III subunit | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29267 | 30088 |
| AVP42336.1 | MH020242_p32 | lysin B | phrog_102 | endolysin | lysis | 1 | 27407 | 28408 |
| AVP42350.1 | MH020242_p49 | hypothetical protein | phrog_3507 | unknown function | unknown function | 1 | 35723 | 36037 |
| AVP42354.1 | MH020242_p54 | hypothetical protein | phrog_4981 | unknown function | unknown function | 1 | 37615 | 37941 |
| AVP42316.1 | MH020242_p12 | major tail protein | phrog_476 | major tail protein | tail | 1 | 7464 | 8273 |
| AVP42393.1 | MH020242_p46 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 34969 | 35193 |
| AVP42309.1 | MH020242_p5 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 3607 | 4332 |
| AVP42360.1 | MH020242_p60 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 39332 | 39664 |
| AVP42392.1 | MH020242_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30104 | 30175 |
| AVP42305.1 | MH020242_p1 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42 | 374 |
| AVP42324.1 | MH020242_p20 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19795 | 21675 |
| AVP42306.1 | MH020242_p2 | terminase small subunit | phrog_4479 | terminase small subunit | head and packaging | 1 | 448 | 702 |
| AVP42370.1 | MH020242_p71 | DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 43703 | 45217 |
| AVP42341.1 | MH020242_p38 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30172 | 30393 |
| AVP42396.1 | MH020242_p41 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 32142 | 32615 |
| AVP42339.1 | MH020242_p35 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29047 | 29280 |
| AVP42395.1 | MH020242_p73 | hypothetical protein | phrog_2001 | unknown function | unknown function | 1 | 45868 | 45993 |
| AVP42308.1 | MH020242_p4 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2202 | 3623 |
| AVP42376.1 | MH020242_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49692 | 49868 |
| AVP42315.1 | MH020242_p11 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 6951 | 7355 |
| AVP42357.1 | MH020242_p57 | WhiB family transcription factor | phrog_1333 | unknown function | unknown function | 1 | 38434 | 38787 |
| AVP42363.1 | MH020242_p64 | hypothetical protein | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 40131 | 40985 |
| AVP42353.1 | MH020242_p53 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 37256 | 37618 |
| AVP42317.1 | MH020242_p14 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8399 | 8950 |
| AVP42372.1 | MH020242_p74 | hypothetical protein | phrog_464 | unknown function | unknown function | 1 | 45990 | 46421 |
| AVP42389.1 | MH020242_p92 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 56561 | 56755 |
| AVP42382.1 | MH020242_p85 | hypothetical protein | phrog_4296 | unknown function | unknown function | 1 | 52404 | 52775 |
| AVP42388.1 | MH020242_p91 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 55106 | 56542 |
| AVP42338.1 | MH020242_p34 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28648 | 29022 |
| AVP42337.1 | MH020242_p33 | holin | phrog_443 | holin | lysis | 1 | 28418 | 28651 |
| AVP42394.1 | MH020242_p61 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39651 | 39821 |
| AVP42321.1 | MH020242_p17 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14677 | 16386 |
| AVP42397.1 | MH020242_p51 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 36297 | 36938 |
| AVP42364.1 | MH020242_p65 | hypothetical protein | phrog_3657 | unknown function | unknown function | 1 | 40979 | 41995 |