| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MH020244 |
Definition |
Mycobacterium phage Lopton, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
52394 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
87 |
%GC |
63.54 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVP42554.1 | MH020244_p65 | helix-turn-helix DNA binding domain protein | phrog_520 | unknown function | unknown function | -1 | 44147 | 44440 |
| AVP42492.1 | MH020244_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 841 | 1137 |
| AVP42551.1 | MH020244_p62 | hypothetical protein | phrog_5742 | unknown function | unknown function | -1 | 43109 | 43207 |
| AVP42535.1 | MH020244_p45 | hypothetical protein | phrog_6173 | unknown function | unknown function | -1 | 35893 | 36135 |
| AVP42506.1 | MH020244_p16 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 14031 | 14267 |
| AVP42571.1 | MH020244_p82 | HNH endonuclease | phrog_932 | unknown function | unknown function | -1 | 49559 | 49708 |
| AVP42576.1 | MH020244_p87 | membrane protein | phrog_828 | unknown function | unknown function | -1 | 51809 | 52012 |
| AVP42561.1 | MH020244_p72 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 46737 | 47132 |
| AVP42501.1 | MH020244_p11 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 7342 | 10053 |
| AVP42534.1 | MH020244_p44 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 34044 | 35870 |
| AVP42537.1 | MH020244_p47 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 36393 | 36884 |
| AVP42494.1 | MH020244_p4 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1784 | 2203 |
| AVP42560.1 | MH020244_p71 | hypothetical protein | phrog_658 | unknown function | unknown function | -1 | 46432 | 46740 |
| AVP42512.1 | MH020244_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16805 | 17281 |
| AVP42553.1 | MH020244_p64 | membrane protein | phrog_1705 | unknown function | unknown function | -1 | 44004 | 44150 |
| AVP42527.1 | MH020244_p37 | integrase | phrog_95 | integrase | integration and excision | 1 | 30822 | 32324 |
| AVP42514.1 | MH020244_p24 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 17715 | 20195 |
| AVP42556.1 | MH020244_p67 | helix-turn-helix DNA binding domain protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44761 | 44943 |
| AVP42510.1 | MH020244_p20 | head-to-tail connector complex protein | phrog_123 | tail terminator | connector | 1 | 15477 | 15923 |
| AVP42524.1 | MH020244_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 29258 | 29449 |
| AVP42513.1 | MH020244_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16805 | 17703 |
| AVP42518.1 | MH020244_p28 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 24352 | 24798 |
| AVP42498.1 | MH020244_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4676 | 4933 |
| AVP42545.1 | MH020244_p56 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 41523 | 41681 |
| AVP42542.1 | MH020244_p52 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 39704 | 40447 |
| AVP42504.1 | MH020244_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 12429 | 12941 |
| AVP42519.1 | MH020244_p29 | minor tail protein | phrog_981 | minor tail protein | tail | 1 | 24795 | 25142 |
| AVP42572.1 | MH020244_p83 | hypothetical protein | phrog_4631 | unknown function | unknown function | -1 | 49705 | 50022 |
| AVP42530.1 | MH020244_p40 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 33112 | 33294 |
| AVP42517.1 | MH020244_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 22455 | 24257 |
| AVP42532.1 | MH020244_p42 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 33383 | 33670 |
| AVP42507.1 | MH020244_p17 | head-to-tail connector complex protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 14267 | 14716 |
| AVP42539.1 | MH020244_p49 | helix-turn-helix DNA binding domain protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 37060 | 37851 |
| AVP42493.1 | MH020244_p3 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 1172 | 1612 |
| AVP42574.1 | MH020244_p85 | hypothetical protein | phrog_2985 | unknown function | unknown function | -1 | 50983 | 51138 |
| AVP42528.1 | MH020244_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 32445 | 32717 |
| AVP42536.1 | MH020244_p46 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 36132 | 36362 |
| AVP42531.1 | MH020244_p41 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 33291 | 33386 |
| AVP42543.1 | MH020244_p53 | hypothetical protein | phrog_8843 | unknown function | unknown function | -1 | 40444 | 40665 |
| AVP42495.1 | MH020244_p5 | tail protein | phrog_1197 | tail protein | tail | 1 | 2613 | 3683 |
| AVP42548.1 | MH020244_p59 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42370 | 42624 |
| AVP42573.1 | MH020244_p84 | hypothetical protein | phrog_3414 | unknown function | unknown function | -1 | 50430 | 50714 |
| AVP42496.1 | MH020244_p6 | structural protein | phrog_553 | minor tail protein | tail | 1 | 3693 | 4394 |
| AVP42547.1 | MH020244_p58 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 41809 | 42300 |
| AVP42550.1 | MH020244_p61 | hypothetical protein | phrog_4371 | unknown function | unknown function | -1 | 42812 | 43102 |
| AVP42516.1 | MH020244_p26 | minor tail protein | phrog_1543 | minor tail protein | tail | 1 | 22273 | 22455 |
| AVP42499.1 | MH020244_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4943 | 6364 |
| AVP42503.1 | MH020244_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 11489 | 12370 |
| AVP42522.1 | MH020244_p32 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 27357 | 28835 |
| AVP42555.1 | MH020244_p66 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 44437 | 44739 |
| AVP42521.1 | MH020244_p31 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 25511 | 27364 |
| AVP42577.1 | MH020244_p55 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 41134 | 41544 |
| AVP42523.1 | MH020244_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28925 | 29248 |
| AVP42563.1 | MH020244_p74 | membrane protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47948 | 48247 |
| AVP42567.1 | MH020244_p78 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 48861 | 49061 |
| AVP42540.1 | MH020244_p50 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 37844 | 37984 |
| AVP42500.1 | MH020244_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 6354 | 7322 |
| AVP42564.1 | MH020244_p75 | hypothetical protein | phrog_6474 | recombination directionality factor | integration and excision | -1 | 48240 | 48419 |
| AVP42520.1 | MH020244_p30 | minor tail protein | phrog_1397 | unknown function | unknown function | 1 | 25139 | 25486 |
| AVP42491.1 | MH020244_p1 | hypothetical protein | phrog_13643 | helicase | DNA, RNA and nucleotide metabolism | 1 | 608 | 844 |
| AVP42546.1 | MH020244_p57 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41678 | 41812 |
| AVP42565.1 | MH020244_p76 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 48416 | 48685 |
| AVP42525.1 | MH020244_p35 | minor tail protein | phrog_754 | minor tail protein | tail | 1 | 29446 | 30216 |
| AVP42552.1 | MH020244_p63 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 43208 | 44017 |
| AVP42568.1 | MH020244_p79 | membrane protein | phrog_1155 | unknown function | unknown function | -1 | 49058 | 49246 |
| AVP42566.1 | MH020244_p77 | hypothetical protein | phrog_6510 | unknown function | unknown function | -1 | 48682 | 48864 |
| AVP42529.1 | MH020244_p39 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 32714 | 33112 |
| AVP42533.1 | MH020244_p43 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 33667 | 34047 |
| AVP42497.1 | MH020244_p7 | tail protein | phrog_1718 | tail protein | tail | 1 | 4408 | 4668 |
| AVP42544.1 | MH020244_p54 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 40662 | 41306 |
| AVP42526.1 | MH020244_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 30374 | 30670 |
| AVP42511.1 | MH020244_p21 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15932 | 16783 |
| AVP42508.1 | MH020244_p18 | head-to-tail connector complex protein | phrog_320 | head closure Hc1 | connector | 1 | 14716 | 15078 |
| AVP42502.1 | MH020244_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 10050 | 11492 |
| AVP42570.1 | MH020244_p81 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 49410 | 49538 |
| AVP42558.1 | MH020244_p69 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 45724 | 46302 |
| AVP42562.1 | MH020244_p73 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 47174 | 47686 |
| AVP42509.1 | MH020244_p19 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 15078 | 15473 |
| AVP42575.1 | MH020244_p86 | hypothetical protein | phrog_10288 | unknown function | unknown function | -1 | 51348 | 51587 |
| AVP42515.1 | MH020244_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 20219 | 22276 |
| AVP42549.1 | MH020244_p60 | hypothetical protein | phrog_6513 | unknown function | unknown function | -1 | 42621 | 42812 |
| AVP42559.1 | MH020244_p70 | hypothetical protein | phrog_1311 | unknown function | unknown function | -1 | 46295 | 46432 |
| AVP42538.1 | MH020244_p48 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36881 | 37063 |
| AVP42569.1 | MH020244_p80 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 49246 | 49413 |
| AVP42541.1 | MH020244_p51 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 37989 | 39707 |
| AVP42505.1 | MH020244_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12951 | 13952 |
| AVP42557.1 | MH020244_p68 | exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44970 | 45704 |