Genomic map of Mycobacterium phage Lopton (MH020244)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MH020244
Definition
Mycobacterium phage Lopton, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
NUCCORE
Length
52394
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
87
%GC
63.54
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AVP42554.1 MH020244_p65 helix-turn-helix DNA binding domain protein phrog_520 unknown function unknown function -1 44147 44440
AVP42492.1 MH020244_p2 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 841 1137
AVP42551.1 MH020244_p62 hypothetical protein phrog_5742 unknown function unknown function -1 43109 43207
AVP42535.1 MH020244_p45 hypothetical protein phrog_6173 unknown function unknown function -1 35893 36135
AVP42506.1 MH020244_p16 hypothetical protein phrog_1857 head-tail connector protein connector 1 14031 14267
AVP42571.1 MH020244_p82 HNH endonuclease phrog_932 unknown function unknown function -1 49559 49708
AVP42576.1 MH020244_p87 membrane protein phrog_828 unknown function unknown function -1 51809 52012
AVP42561.1 MH020244_p72 hypothetical protein phrog_1809 unknown function unknown function -1 46737 47132
AVP42501.1 MH020244_p11 terminase large subunit phrog_9 terminase large subunit head and packaging 1 7342 10053
AVP42534.1 MH020244_p44 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 34044 35870
AVP42537.1 MH020244_p47 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 36393 36884
AVP42494.1 MH020244_p4 hypothetical protein phrog_2830 unknown function unknown function 1 1784 2203
AVP42560.1 MH020244_p71 hypothetical protein phrog_658 unknown function unknown function -1 46432 46740
AVP42512.1 MH020244_p23 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16805 17281
AVP42553.1 MH020244_p64 membrane protein phrog_1705 unknown function unknown function -1 44004 44150
AVP42527.1 MH020244_p37 integrase phrog_95 integrase integration and excision 1 30822 32324
AVP42514.1 MH020244_p24 tape measure protein phrog_305 tail length tape measure protein tail 1 17715 20195
AVP42556.1 MH020244_p67 helix-turn-helix DNA binding domain protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 44761 44943
AVP42510.1 MH020244_p20 head-to-tail connector complex protein phrog_123 tail terminator connector 1 15477 15923
AVP42524.1 MH020244_p34 hypothetical protein phrog_1560 unknown function unknown function 1 29258 29449
AVP42513.1 MH020244_p22 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 16805 17703
AVP42518.1 MH020244_p28 minor tail protein phrog_352 minor tail protein tail 1 24352 24798
AVP42498.1 MH020244_p8 hypothetical protein phrog_747 unknown function unknown function 1 4676 4933
AVP42545.1 MH020244_p56 hypothetical protein phrog_1783 unknown function unknown function -1 41523 41681
AVP42542.1 MH020244_p52 hypothetical protein phrog_1167 phosphofructokinase other -1 39704 40447
AVP42504.1 MH020244_p14 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 12429 12941
AVP42519.1 MH020244_p29 minor tail protein phrog_981 minor tail protein tail 1 24795 25142
AVP42572.1 MH020244_p83 hypothetical protein phrog_4631 unknown function unknown function -1 49705 50022
AVP42530.1 MH020244_p40 hypothetical protein phrog_2035 unknown function unknown function -1 33112 33294
AVP42517.1 MH020244_p27 minor tail protein phrog_110 minor tail protein tail 1 22455 24257
AVP42532.1 MH020244_p42 hypothetical protein phrog_1971 unknown function unknown function -1 33383 33670
AVP42507.1 MH020244_p17 head-to-tail connector complex protein phrog_137 head-tail adaptor Ad1 connector 1 14267 14716
AVP42539.1 MH020244_p49 helix-turn-helix DNA binding domain protein phrog_354 sigma-K factor transcription regulation -1 37060 37851
AVP42493.1 MH020244_p3 terminase small subunit phrog_226 minor tail protein tail 1 1172 1612
AVP42574.1 MH020244_p85 hypothetical protein phrog_2985 unknown function unknown function -1 50983 51138
AVP42528.1 MH020244_p38 hypothetical protein phrog_1966 unknown function unknown function -1 32445 32717
AVP42536.1 MH020244_p46 hypothetical protein phrog_1781 unknown function unknown function -1 36132 36362
AVP42531.1 MH020244_p41 hypothetical protein phrog_1860 unknown function unknown function -1 33291 33386
AVP42543.1 MH020244_p53 hypothetical protein phrog_8843 unknown function unknown function -1 40444 40665
AVP42495.1 MH020244_p5 tail protein phrog_1197 tail protein tail 1 2613 3683
AVP42548.1 MH020244_p59 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 42370 42624
AVP42573.1 MH020244_p84 hypothetical protein phrog_3414 unknown function unknown function -1 50430 50714
AVP42496.1 MH020244_p6 structural protein phrog_553 minor tail protein tail 1 3693 4394
AVP42547.1 MH020244_p58 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 41809 42300
AVP42550.1 MH020244_p61 hypothetical protein phrog_4371 unknown function unknown function -1 42812 43102
AVP42516.1 MH020244_p26 minor tail protein phrog_1543 minor tail protein tail 1 22273 22455
AVP42499.1 MH020244_p9 lysin A phrog_317 endolysin lysis 1 4943 6364
AVP42503.1 MH020244_p13 capsid maturation protease phrog_193 head maturation protease head and packaging 1 11489 12370
AVP42522.1 MH020244_p32 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 27357 28835
AVP42555.1 MH020244_p66 hypothetical protein phrog_2184 unknown function unknown function -1 44437 44739
AVP42521.1 MH020244_p31 minor tail protein phrog_346 minor tail protein tail 1 25511 27364
AVP42577.1 MH020244_p55 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 41134 41544
AVP42523.1 MH020244_p33 hypothetical protein phrog_644 unknown function unknown function 1 28925 29248
AVP42563.1 MH020244_p74 membrane protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47948 48247
AVP42567.1 MH020244_p78 hypothetical protein phrog_1387 unknown function unknown function -1 48861 49061
AVP42540.1 MH020244_p50 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 37844 37984
AVP42500.1 MH020244_p10 lysin B phrog_102 endolysin lysis 1 6354 7322
AVP42564.1 MH020244_p75 hypothetical protein phrog_6474 recombination directionality factor integration and excision -1 48240 48419
AVP42520.1 MH020244_p30 minor tail protein phrog_1397 unknown function unknown function 1 25139 25486
AVP42491.1 MH020244_p1 hypothetical protein phrog_13643 helicase DNA, RNA and nucleotide metabolism 1 608 844
AVP42546.1 MH020244_p57 hypothetical protein phrog_397 unknown function unknown function -1 41678 41812
AVP42565.1 MH020244_p76 hypothetical protein phrog_1720 unknown function unknown function -1 48416 48685
AVP42525.1 MH020244_p35 minor tail protein phrog_754 minor tail protein tail 1 29446 30216
AVP42552.1 MH020244_p63 dsDNA helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 43208 44017
AVP42568.1 MH020244_p79 membrane protein phrog_1155 unknown function unknown function -1 49058 49246
AVP42566.1 MH020244_p77 hypothetical protein phrog_6510 unknown function unknown function -1 48682 48864
AVP42529.1 MH020244_p39 hypothetical protein phrog_2387 nucleotide kinase other -1 32714 33112
AVP42533.1 MH020244_p43 hypothetical protein phrog_383 unknown function unknown function -1 33667 34047
AVP42497.1 MH020244_p7 tail protein phrog_1718 tail protein tail 1 4408 4668
AVP42544.1 MH020244_p54 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 40662 41306
AVP42526.1 MH020244_p36 hypothetical protein phrog_411 unknown function unknown function 1 30374 30670
AVP42511.1 MH020244_p21 major tail protein phrog_117 major tail protein tail 1 15932 16783
AVP42508.1 MH020244_p18 head-to-tail connector complex protein phrog_320 head closure Hc1 connector 1 14716 15078
AVP42502.1 MH020244_p12 portal protein phrog_104 portal protein head and packaging 1 10050 11492
AVP42570.1 MH020244_p81 hypothetical protein phrog_2093 unknown function unknown function -1 49410 49538
AVP42558.1 MH020244_p69 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 45724 46302
AVP42562.1 MH020244_p73 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 47174 47686
AVP42509.1 MH020244_p19 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 15078 15473
AVP42575.1 MH020244_p86 hypothetical protein phrog_10288 unknown function unknown function -1 51348 51587
AVP42515.1 MH020244_p25 minor tail protein phrog_106 minor tail protein tail 1 20219 22276
AVP42549.1 MH020244_p60 hypothetical protein phrog_6513 unknown function unknown function -1 42621 42812
AVP42559.1 MH020244_p70 hypothetical protein phrog_1311 unknown function unknown function -1 46295 46432
AVP42538.1 MH020244_p48 hypothetical protein phrog_499 unknown function unknown function -1 36881 37063
AVP42569.1 MH020244_p80 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 49246 49413
AVP42541.1 MH020244_p51 phosphoesterase phrog_221 metallo-phosphoesterase other -1 37989 39707
AVP42505.1 MH020244_p15 major capsid protein phrog_10 major head protein head and packaging 1 12951 13952
AVP42557.1 MH020244_p68 exonuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 44970 45704