| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MH051252 |
Definition |
Mycobacterium phage Fameo, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
52618 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
63.4 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVR76832.1 | MH051252_p63 | hypothetical protein | phrog_2187 | unknown function | unknown function | -1 | 40218 | 40337 |
| AVR76792.1 | MH051252_p22 | head-to-tail connector complex protein | phrog_123 | tail terminator | connector | 1 | 14661 | 15080 |
| AVR76830.1 | MH051252_p61 | hypothetical protein | phrog_1370 | unknown function | unknown function | -1 | 39616 | 39753 |
| AVR76799.1 | MH051252_p29 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 22085 | 22531 |
| AVR76835.1 | MH051252_p66 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41427 | 41657 |
| AVR76809.1 | MH051252_p39 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 28281 | 28664 |
| AVR76782.1 | MH051252_p12 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 7454 | 9241 |
| AVR76858.1 | MH051252_p90 | hypothetical protein | phrog_6255 | unknown function | unknown function | -1 | 49669 | 49929 |
| AVR76775.1 | MH051252_p5 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2671 | 2967 |
| AVR76823.1 | MH051252_p53 | membrane protein | phrog_499 | unknown function | unknown function | -1 | 36226 | 36408 |
| AVR76772.1 | MH051252_p2 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 667 | 1497 |
| AVR76841.1 | MH051252_p72 | exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43487 | 44305 |
| AVR76861.1 | MH051252_p93 | hypothetical protein | phrog_1445 | unknown function | unknown function | -1 | 51005 | 51082 |
| AVR76839.1 | MH051252_p70 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42946 | 43185 |
| AVR76853.1 | MH051252_p84 | membrane protein | phrog_3718 | unknown function | unknown function | -1 | 48280 | 48576 |
| AVR76791.1 | MH051252_p21 | head-to-tail connector complex protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14329 | 14664 |
| AVR76826.1 | MH051252_p56 | MRE11 double-strand break endo/exonuclease | phrog_221 | metallo-phosphoesterase | other | -1 | 37244 | 38014 |
| AVR76838.1 | MH051252_p69 | hypothetical protein | phrog_2731 | unknown function | unknown function | -1 | 42812 | 42949 |
| AVR76812.1 | MH051252_p42 | hypothetical protein | phrog_3283 | unknown function | unknown function | -1 | 29208 | 29435 |
| AVR76806.1 | MH051252_p36 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 27420 | 27818 |
| AVR76818.1 | MH051252_p48 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 32423 | 32632 |
| AVR76773.1 | MH051252_p3 | hypothetical protein | phrog_5234 | unknown function | unknown function | 1 | 1545 | 2357 |
| AVR76771.1 | MH051252_p1 | hypothetical protein | phrog_7736 | unknown function | unknown function | 1 | 331 | 447 |
| AVR76777.1 | MH051252_p7 | minor tail protein | phrog_1260 | minor tail protein | tail | 1 | 3563 | 4528 |
| AVR76817.1 | MH051252_p47 | helix-turn-helix DNA binding domain protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32004 | 32426 |
| AVR76842.1 | MH051252_p73 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44302 | 44721 |
| AVR76803.1 | MH051252_p33 | hypothetical protein | phrog_13711 | unknown function | unknown function | 1 | 25269 | 25433 |
| AVR76828.1 | MH051252_p58 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 38502 | 38774 |
| AVR76821.1 | MH051252_p51 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 33966 | 36026 |
| AVR76855.1 | MH051252_p87 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 48955 | 49308 |
| AVR76864.1 | MH051252_p60 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39234 | 39638 |
| AVR76852.1 | MH051252_p83 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 48132 | 48269 |
| AVR76801.1 | MH051252_p31 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 22816 | 25014 |
| AVR76814.1 | MH051252_p44 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29685 | 31472 |
| AVR76845.1 | MH051252_p76 | hypothetical protein | phrog_4569 | unknown function | unknown function | -1 | 45917 | 46171 |
| AVR76829.1 | MH051252_p59 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38774 | 39406 |
| AVR76785.1 | MH051252_p15 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11633 | 12145 |
| AVR76833.1 | MH051252_p64 | hydrolase | phrog_789 | esterase/lipase | other | -1 | 40337 | 41173 |
| AVR76787.1 | MH051252_p17 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 13210 | 13392 |
| AVR76844.1 | MH051252_p75 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 45606 | 45770 |
| AVR76834.1 | MH051252_p65 | helix-turn-helix DNA binding domain protein | phrog_1123 | unknown function | unknown function | -1 | 41170 | 41427 |
| AVR76793.1 | MH051252_p23 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15099 | 15683 |
| AVR76819.1 | MH051252_p49 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 32634 | 33359 |
| AVR76798.1 | MH051252_p28 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 20236 | 22008 |
| AVR76822.1 | MH051252_p52 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 36026 | 36229 |
| AVR76779.1 | MH051252_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4800 | 6035 |
| AVR76805.1 | MH051252_p35 | membrane protein | phrog_733 | excisionase | integration and excision | 1 | 26939 | 27373 |
| AVR76850.1 | MH051252_p81 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47072 | 47377 |
| AVR76827.1 | MH051252_p57 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38011 | 38505 |
| AVR76831.1 | MH051252_p62 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39779 | 40252 |
| AVR76776.1 | MH051252_p6 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 3008 | 3478 |
| AVR76815.1 | MH051252_p45 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 31481 | 31819 |
| AVR76860.1 | MH051252_p92 | hypothetical protein | phrog_2499 | unknown function | unknown function | -1 | 50804 | 50977 |
| AVR76810.1 | MH051252_p40 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 28661 | 28927 |
| AVR76790.1 | MH051252_p20 | head-to-tail connector complex protein | phrog_320 | head closure Hc1 | connector | 1 | 13961 | 14329 |
| AVR76789.1 | MH051252_p19 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 13770 | 13964 |
| AVR76794.1 | MH051252_p25 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15843 | 16250 |
| AVR76813.1 | MH051252_p43 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 29435 | 29653 |
| AVR76849.1 | MH051252_p80 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 46941 | 47072 |
| AVR76857.1 | MH051252_p89 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 49469 | 49669 |
| AVR76848.1 | MH051252_p79 | hypothetical protein | phrog_3351 | unknown function | unknown function | -1 | 46708 | 46941 |
| AVR76862.1 | MH051252_p94 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 51116 | 51403 |
| AVR76825.1 | MH051252_p55 | hypothetical protein | phrog_2436 | unknown function | unknown function | -1 | 37091 | 37240 |
| AVR76788.1 | MH051252_p18 | head-to-tail connector complex protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13396 | 13773 |
| AVR76797.1 | MH051252_p27 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19223 | 20239 |
| AVR76778.1 | MH051252_p8 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 4642 | 4800 |
| AVR76802.1 | MH051252_p32 | hypothetical protein | phrog_2570 | unknown function | unknown function | 1 | 25078 | 25272 |
| AVR76847.1 | MH051252_p78 | hypothetical protein | phrog_1875 | unknown function | unknown function | -1 | 46472 | 46711 |
| AVR76784.1 | MH051252_p14 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10698 | 11582 |
| AVR76796.1 | MH051252_p26 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16665 | 19202 |
| AVR76816.1 | MH051252_p46 | hypothetical protein | phrog_3812 | unknown function | unknown function | -1 | 31819 | 32004 |
| AVR76811.1 | MH051252_p41 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 28924 | 29208 |
| AVR76780.1 | MH051252_p10 | holin | phrog_526 | holin | lysis | 1 | 6032 | 6451 |
| AVR76843.1 | MH051252_p74 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44785 | 45363 |
| AVR76824.1 | MH051252_p54 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36408 | 37094 |
| AVR76786.1 | MH051252_p16 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12175 | 13140 |
| AVR76863.1 | MH051252_p85 | hypothetical protein | phrog_9713 | unknown function | unknown function | -1 | 48573 | 48644 |
| AVR76840.1 | MH051252_p71 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 43214 | 43438 |
| AVR76774.1 | MH051252_p4 | hypothetical protein | phrog_3585 | immunity protein | other | 1 | 2357 | 2674 |
| AVR76783.1 | MH051252_p13 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9238 | 10701 |
| AVR76846.1 | MH051252_p77 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 46173 | 46475 |
| AVR76781.1 | MH051252_p11 | lysin B | phrog_102 | endolysin | lysis | 1 | 6448 | 7431 |
| AVR76808.1 | MH051252_p38 | hypothetical protein | phrog_9463 | unknown function | unknown function | -1 | 28087 | 28284 |
| AVR76804.1 | MH051252_p34 | integrase | phrog_1 | integrase | integration and excision | -1 | 25430 | 26494 |
| AVR76851.1 | MH051252_p82 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 47374 | 48132 |
| AVR76837.1 | MH051252_p68 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41996 | 42802 |
| AVR76836.1 | MH051252_p67 | membrane protein | phrog_542 | unknown function | unknown function | -1 | 41795 | 41968 |
| AVR76800.1 | MH051252_p30 | minor tail protein | phrog_404 | minor tail protein | tail | 1 | 22528 | 22815 |
| AVR76807.1 | MH051252_p37 | excise | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 27917 | 28087 |
| AVR76856.1 | MH051252_p88 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 49305 | 49472 |
| AVR76820.1 | MH051252_p50 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 33436 | 33969 |
| AVR76859.1 | MH051252_p91 | hypothetical protein | phrog_1617 | unknown function | unknown function | -1 | 49926 | 50807 |
| AVR76854.1 | MH051252_p86 | hypothetical protein | phrog_2223 | unknown function | unknown function | -1 | 48641 | 48958 |
| AVR76795.1 | MH051252_p24 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15843 | 16675 |