Genomic map of Pseudomonas phage vB_PaeP_130_113 (MH107770)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MH107770
Definition
Pseudomonas phage vB_PaeP_130_113, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Krylovirinae; Phikmvvirus; Pseudomonas virus 130-113.
DB of origin
NUCCORE
Length
44205
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
62
%GC
62.35
Number of singletons
7
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AVX47642.1 MH107770_p39 structural protein phrog_3112 virion structural protein head and packaging 1 22098 22373
AVX47649.1 MH107770_p46 baseplate hub subunit phrog_2083 internal virion lysozyme motif head and packaging 1 29628 32324
AVX47650.1 MH107770_p47 internal virion protein phrog_342 internal virion protein with endolysin domain head and packaging 1 32328 36341
AVX47622.1 MH107770_p19 DNA primase phrog_2563 unknown function unknown function 1 7124 7666
AVX47607.1 MH107770_p4 hypothetical protein phrog_5722 unknown function unknown function 1 1926 2210
AVX47637.1 MH107770_p34 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 18040 18402
AVX47657.1 MH107770_p54 holin phrog_6597 holin lysis 1 41183 41383
AVX47643.1 MH107770_p40 collar phrog_449 head-tail adaptor connector 1 22385 23917
AVX47636.1 MH107770_p33 exonuclease phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 16984 18030
AVX47661.1 MH107770_p58 structural protein phrog_6908 minor head protein head and packaging 1 42239 42553
AVX47655.1 MH107770_p52 terminase small subunit phrog_891 terminase small subunit head and packaging 1 39066 39371
AVX47665.1 MH107770_p62 hypothetical protein singleton unknown function unknown function 1 43634 43735
AVX47619.1 MH107770_p16 tail fiber protein phrog_5433 unknown function unknown function 1 5198 5614
AVX47618.1 MH107770_p15 hypothetical protein phrog_4342 unknown function unknown function 1 4827 5120
AVX47614.1 MH107770_p11 hypothetical protein phrog_21702 unknown function unknown function 1 3934 4119
AVX47647.1 MH107770_p44 tail tubular protein B phrog_457 tail protein tail 1 26576 29083
AVX47663.1 MH107770_p60 hypothetical protein singleton unknown function unknown function 1 42899 43393
AVX47640.1 MH107770_p37 hypothetical protein phrog_6575 unknown function unknown function 1 21408 21659
AVX47627.1 MH107770_p24 ppGpp synthetase phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 9930 10526
AVX47616.1 MH107770_p13 hypothetical protein phrog_4342 unknown function unknown function 1 4295 4579
AVX47660.1 MH107770_p57 Rz1 protein phrog_21506 Rz-like spanin lysis 1 42124 42237
AVX47634.1 MH107770_p31 5' to 3' exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 15616 16557
AVX47606.1 MH107770_p3 hypothetical protein phrog_20091 unknown function unknown function 1 1784 1912
AVX47623.1 MH107770_p20 hypothetical protein phrog_9768 unknown function unknown function 1 7656 7775
AVX47656.1 MH107770_p53 terminase large subunit phrog_38 terminase large subunit head and packaging 1 39381 41186
AVX47629.1 MH107770_p26 hypothetical protein phrog_19207 unknown function unknown function 1 11470 11754
AVX47654.1 MH107770_p51 tail fiber protein phrog_4950 tail fiber protein tail 1 38461 39066
AVX47610.1 MH107770_p7 hypothetical protein phrog_18183 unknown function unknown function 1 2984 3154
AVX47620.1 MH107770_p17 hypothetical protein phrog_6915 unknown function unknown function 1 5683 6042
AVX47635.1 MH107770_p32 endonuclease VII phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 16547 16987
AVX47613.1 MH107770_p10 hypothetical protein phrog_7027 unknown function unknown function 1 3710 3937
AVX47662.1 MH107770_p59 hypothetical protein singleton unknown function unknown function 1 42573 43049
AVX47617.1 MH107770_p14 hypothetical protein phrog_24541 unknown function unknown function 1 4579 4830
AVX47632.1 MH107770_p29 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 12082 14511
AVX47605.1 MH107770_p2 hypothetical protein singleton unknown function unknown function 1 1579 1692
AVX47611.1 MH107770_p8 hypothetical protein phrog_12691 unknown function unknown function 1 3157 3276
AVX47639.1 MH107770_p36 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 18772 21219
AVX47644.1 MH107770_p41 capsid scaffolding protein phrog_1018 head scaffolding protein head and packaging 1 23921 24889
AVX47638.1 MH107770_p35 hypothetical protein phrog_18213 unknown function unknown function 1 18395 18763
AVX47651.1 MH107770_p48 tail fibers protein phrog_6953 tail fiber protein tail 1 36343 37098
AVX47631.1 MH107770_p28 exonuclease phrog_7292 unknown function unknown function 1 11900 12085
AVX47641.1 MH107770_p38 diguanylate cyclase/phosphodiesterase phrog_3986 unknown function unknown function 1 21659 22132
AVX47612.1 MH107770_p9 hypothetical protein phrog_6951 unknown function unknown function 1 3355 3723
AVX47628.1 MH107770_p25 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 10526 11473
AVX47645.1 MH107770_p42 capsid protein phrog_267 major head protein head and packaging 1 24942 25949
AVX47646.1 MH107770_p43 tail tubular protein A phrog_446 tail protein tail 1 26046 26600
AVX47624.1 MH107770_p21 hypothetical protein singleton unknown function unknown function 1 7793 7885
AVX47652.1 MH107770_p49 tail fiber component phrog_8874 tail fiber protein tail 1 37098 37556
AVX47609.1 MH107770_p6 hypothetical protein phrog_1448 unknown function unknown function 1 2448 2987
AVX47604.1 MH107770_p1 hypothetical protein singleton unknown function unknown function 1 118 867
AVX47615.1 MH107770_p12 hypothetical protein phrog_8496 unknown function unknown function 1 4116 4295
AVX47658.1 MH107770_p55 lysin phrog_7 endolysin lysis 1 41380 41862
AVX47626.1 MH107770_p23 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 8651 9919
AVX47659.1 MH107770_p56 Rz protein phrog_214 Rz-like spanin lysis 1 41820 42149
AVX47621.1 MH107770_p18 DNA-binding protein phrog_6982 DNA polymerase DNA, RNA and nucleotide metabolism 1 6045 6854
AVX47648.1 MH107770_p45 internal virion protein phrog_805 internal virion protein head and packaging 1 29083 29628
AVX47664.1 MH107770_p61 structural protein phrog_7171 minor head protein head and packaging 1 43405 43599
AVX47653.1 MH107770_p50 tail fiber component phrog_4176 tail fiber protein tail 1 37549 38457
AVX47625.1 MH107770_p22 DNA primase/helicase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 7858 8682
AVX47630.1 MH107770_p27 hypothetical protein singleton unknown function unknown function 1 11757 11903
AVX47633.1 MH107770_p30 hypothetical protein phrog_862 unknown function unknown function 1 14567 15616
AVX47608.1 MH107770_p5 hypothetical protein phrog_7124 unknown function unknown function 1 2210 2437