| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MH107770 |
Definition |
Pseudomonas phage vB_PaeP_130_113, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Krylovirinae; Phikmvvirus; Pseudomonas virus 130-113. |
DB of origin |
NUCCORE |
Length |
44205 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
62 |
%GC |
62.35 |
Number of singletons |
7 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVX47642.1 | MH107770_p39 | structural protein | phrog_3112 | virion structural protein | head and packaging | 1 | 22098 | 22373 |
| AVX47649.1 | MH107770_p46 | baseplate hub subunit | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 29628 | 32324 |
| AVX47650.1 | MH107770_p47 | internal virion protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 32328 | 36341 |
| AVX47622.1 | MH107770_p19 | DNA primase | phrog_2563 | unknown function | unknown function | 1 | 7124 | 7666 |
| AVX47607.1 | MH107770_p4 | hypothetical protein | phrog_5722 | unknown function | unknown function | 1 | 1926 | 2210 |
| AVX47637.1 | MH107770_p34 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 18040 | 18402 |
| AVX47657.1 | MH107770_p54 | holin | phrog_6597 | holin | lysis | 1 | 41183 | 41383 |
| AVX47643.1 | MH107770_p40 | collar | phrog_449 | head-tail adaptor | connector | 1 | 22385 | 23917 |
| AVX47636.1 | MH107770_p33 | exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 16984 | 18030 |
| AVX47661.1 | MH107770_p58 | structural protein | phrog_6908 | minor head protein | head and packaging | 1 | 42239 | 42553 |
| AVX47655.1 | MH107770_p52 | terminase small subunit | phrog_891 | terminase small subunit | head and packaging | 1 | 39066 | 39371 |
| AVX47665.1 | MH107770_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43634 | 43735 |
| AVX47619.1 | MH107770_p16 | tail fiber protein | phrog_5433 | unknown function | unknown function | 1 | 5198 | 5614 |
| AVX47618.1 | MH107770_p15 | hypothetical protein | phrog_4342 | unknown function | unknown function | 1 | 4827 | 5120 |
| AVX47614.1 | MH107770_p11 | hypothetical protein | phrog_21702 | unknown function | unknown function | 1 | 3934 | 4119 |
| AVX47647.1 | MH107770_p44 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 26576 | 29083 |
| AVX47663.1 | MH107770_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42899 | 43393 |
| AVX47640.1 | MH107770_p37 | hypothetical protein | phrog_6575 | unknown function | unknown function | 1 | 21408 | 21659 |
| AVX47627.1 | MH107770_p24 | ppGpp synthetase | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 9930 | 10526 |
| AVX47616.1 | MH107770_p13 | hypothetical protein | phrog_4342 | unknown function | unknown function | 1 | 4295 | 4579 |
| AVX47660.1 | MH107770_p57 | Rz1 protein | phrog_21506 | Rz-like spanin | lysis | 1 | 42124 | 42237 |
| AVX47634.1 | MH107770_p31 | 5' to 3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15616 | 16557 |
| AVX47606.1 | MH107770_p3 | hypothetical protein | phrog_20091 | unknown function | unknown function | 1 | 1784 | 1912 |
| AVX47623.1 | MH107770_p20 | hypothetical protein | phrog_9768 | unknown function | unknown function | 1 | 7656 | 7775 |
| AVX47656.1 | MH107770_p53 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 39381 | 41186 |
| AVX47629.1 | MH107770_p26 | hypothetical protein | phrog_19207 | unknown function | unknown function | 1 | 11470 | 11754 |
| AVX47654.1 | MH107770_p51 | tail fiber protein | phrog_4950 | tail fiber protein | tail | 1 | 38461 | 39066 |
| AVX47610.1 | MH107770_p7 | hypothetical protein | phrog_18183 | unknown function | unknown function | 1 | 2984 | 3154 |
| AVX47620.1 | MH107770_p17 | hypothetical protein | phrog_6915 | unknown function | unknown function | 1 | 5683 | 6042 |
| AVX47635.1 | MH107770_p32 | endonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 16547 | 16987 |
| AVX47613.1 | MH107770_p10 | hypothetical protein | phrog_7027 | unknown function | unknown function | 1 | 3710 | 3937 |
| AVX47662.1 | MH107770_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42573 | 43049 |
| AVX47617.1 | MH107770_p14 | hypothetical protein | phrog_24541 | unknown function | unknown function | 1 | 4579 | 4830 |
| AVX47632.1 | MH107770_p29 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 12082 | 14511 |
| AVX47605.1 | MH107770_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1579 | 1692 |
| AVX47611.1 | MH107770_p8 | hypothetical protein | phrog_12691 | unknown function | unknown function | 1 | 3157 | 3276 |
| AVX47639.1 | MH107770_p36 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18772 | 21219 |
| AVX47644.1 | MH107770_p41 | capsid scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 23921 | 24889 |
| AVX47638.1 | MH107770_p35 | hypothetical protein | phrog_18213 | unknown function | unknown function | 1 | 18395 | 18763 |
| AVX47651.1 | MH107770_p48 | tail fibers protein | phrog_6953 | tail fiber protein | tail | 1 | 36343 | 37098 |
| AVX47631.1 | MH107770_p28 | exonuclease | phrog_7292 | unknown function | unknown function | 1 | 11900 | 12085 |
| AVX47641.1 | MH107770_p38 | diguanylate cyclase/phosphodiesterase | phrog_3986 | unknown function | unknown function | 1 | 21659 | 22132 |
| AVX47612.1 | MH107770_p9 | hypothetical protein | phrog_6951 | unknown function | unknown function | 1 | 3355 | 3723 |
| AVX47628.1 | MH107770_p25 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 10526 | 11473 |
| AVX47645.1 | MH107770_p42 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 24942 | 25949 |
| AVX47646.1 | MH107770_p43 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 26046 | 26600 |
| AVX47624.1 | MH107770_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7793 | 7885 |
| AVX47652.1 | MH107770_p49 | tail fiber component | phrog_8874 | tail fiber protein | tail | 1 | 37098 | 37556 |
| AVX47609.1 | MH107770_p6 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 2448 | 2987 |
| AVX47604.1 | MH107770_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 118 | 867 |
| AVX47615.1 | MH107770_p12 | hypothetical protein | phrog_8496 | unknown function | unknown function | 1 | 4116 | 4295 |
| AVX47658.1 | MH107770_p55 | lysin | phrog_7 | endolysin | lysis | 1 | 41380 | 41862 |
| AVX47626.1 | MH107770_p23 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 8651 | 9919 |
| AVX47659.1 | MH107770_p56 | Rz protein | phrog_214 | Rz-like spanin | lysis | 1 | 41820 | 42149 |
| AVX47621.1 | MH107770_p18 | DNA-binding protein | phrog_6982 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 6045 | 6854 |
| AVX47648.1 | MH107770_p45 | internal virion protein | phrog_805 | internal virion protein | head and packaging | 1 | 29083 | 29628 |
| AVX47664.1 | MH107770_p61 | structural protein | phrog_7171 | minor head protein | head and packaging | 1 | 43405 | 43599 |
| AVX47653.1 | MH107770_p50 | tail fiber component | phrog_4176 | tail fiber protein | tail | 1 | 37549 | 38457 |
| AVX47625.1 | MH107770_p22 | DNA primase/helicase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 7858 | 8682 |
| AVX47630.1 | MH107770_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11757 | 11903 |
| AVX47633.1 | MH107770_p30 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 14567 | 15616 |
| AVX47608.1 | MH107770_p5 | hypothetical protein | phrog_7124 | unknown function | unknown function | 1 | 2210 | 2437 |