| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_000871 |
Definition |
Streptococcus phage Sfi19, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Moineauvirus. |
DB of origin |
REFSEQ |
Length |
37370 |
Host Name |
Streptococcus thermophilus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
45 |
%GC |
38.27 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_049945.1 | NC_000871_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25975 | 26139 |
| NP_049955.1 | NC_000871_p35 | primase | phrog_864 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 31767 | 33287 |
| NP_049947.1 | NC_000871_p26 | cro repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 26647 | 26856 |
| NP_049934.1 | NC_000871_p12 | tail component protein | phrog_1346 | tail protein | tail | 1 | 9390 | 9743 |
| NP_049937.1 | NC_000871_p15 | tail-host specificity protein | phrog_588 | tail fiber protein and host specificity | tail | 1 | 16396 | 20271 |
| NP_049957.1 | NC_000871_p37 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 33953 | 34273 |
| NP_049963.1 | NC_000871_p43 | DNA binding protein | phrog_1994 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 35906 | 36370 |
| NP_049959.1 | NC_000871_p39 | hypothetical protein | phrog_803 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 34484 | 34657 |
| NP_049950.1 | NC_000871_p30 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 28029 | 28502 |
| NP_049948.1 | NC_000871_p28 | hypothetical protein | phrog_7964 | unknown function | unknown function | 1 | 27188 | 27877 |
| NP_049925.1 | NC_000871_p3 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 1566 | 2027 |
| NP_049938.1 | NC_000871_p16 | minor structural protein | phrog_372 | tail protein | tail | 1 | 20274 | 22286 |
| NP_049923.1 | NC_000871_p1 | Apaf-1 related killer DARK | phrog_36 | transcriptional regulator | transcription regulation | 1 | 363 | 761 |
| NP_049943.1 | NC_000871_p22 | hypothetical protein | phrog_8487 | unknown function | unknown function | 1 | 24953 | 25288 |
| NP_597798.1 | NC_000871_p18 | hypothetical protein | phrog_1567 | unknown function | unknown function | 1 | 22705 | 22851 |
| NP_049942.1 | NC_000871_p21 | lysin | phrog_998 | endolysin | lysis | 1 | 23507 | 24373 |
| NP_049930.1 | NC_000871_p8 | DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 7215 | 7529 |
| NP_049949.1 | NC_000871_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27279 | 27668 |
| NP_049958.1 | NC_000871_p38 | hypothetical protein | phrog_1982 | unknown function | unknown function | 1 | 34257 | 34526 |
| NP_049953.1 | NC_000871_p33 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 30513 | 30968 |
| NP_049927.1 | NC_000871_p5 | head-tail joining protein | phrog_1142 | unknown function | unknown function | 1 | 3982 | 4161 |
| NP_049931.1 | NC_000871_p9 | head-tail joining protein | phrog_25 | head closure Hc1 | connector | 1 | 7529 | 7879 |
| NP_597799.1 | NC_000871_p27 | hypothetical protein | phrog_1022 | unknown function | unknown function | 1 | 26873 | 26995 |
| NP_049961.1 | NC_000871_p41 | hypothetical protein | phrog_33645 | unknown function | unknown function | 1 | 34810 | 35013 |
| NP_049944.1 | NC_000871_p23 | hypothetical protein | phrog_4964 | unknown function | unknown function | 1 | 25310 | 25861 |
| NP_049932.1 | NC_000871_p10 | tail component protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7886 | 8347 |
| NP_049954.1 | NC_000871_p34 | replication protein | phrog_695 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 30971 | 31786 |
| NP_049965.1 | NC_000871_p45 | hypothetical protein | phrog_1814 | unknown function | unknown function | 1 | 36645 | 37352 |
| NP_049941.1 | NC_000871_p20 | holin | phrog_297 | holin | lysis | 1 | 23263 | 23526 |
| NP_049964.1 | NC_000871_p44 | hypothetical protein | phrog_884 | unknown function | unknown function | 1 | 36345 | 36641 |
| NP_049926.1 | NC_000871_p4 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2107 | 3978 |
| NP_049928.1 | NC_000871_p6 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 4179 | 5339 |
| NP_049936.1 | NC_000871_p14 | tail component protein | phrog_202 | distal tail protein Dit | tail | 1 | 14849 | 16396 |
| NP_049956.1 | NC_000871_p36 | hypothetical protein | phrog_9118 | unknown function | unknown function | 1 | 33540 | 33971 |
| NP_049939.1 | NC_000871_p17 | hypothetical protein | phrog_1060 | unknown function | unknown function | 1 | 22303 | 22698 |
| NP_049946.1 | NC_000871_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26264 | 26431 |
| NP_049929.1 | NC_000871_p7 | major head protein | phrog_10 | major head protein | head and packaging | 1 | 6007 | 7200 |
| NP_049940.1 | NC_000871_p19 | holin | phrog_199 | holin | lysis | 1 | 22866 | 23291 |
| NP_049951.1 | NC_000871_p31 | predicted NTP-binding motif protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 28499 | 29200 |
| NP_049924.1 | NC_000871_p2 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 865 | 1377 |
| NP_049952.1 | NC_000871_p32 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 29175 | 30506 |
| NP_049960.1 | NC_000871_p40 | hypothetical protein | phrog_1489 | unknown function | unknown function | 1 | 34654 | 34809 |
| NP_049935.1 | NC_000871_p13 | minor tail protein | phrog_167 | tail length tape measure protein | tail | 1 | 9963 | 14843 |
| NP_049962.1 | NC_000871_p42 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 35291 | 35869 |
| NP_049933.1 | NC_000871_p11 | major tail protein | phrog_88 | major tail protein | tail | 1 | 8705 | 9316 |