Genomic map of Streptococcus virus Sfi21 (NC_000872)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_000872
Definition
Streptococcus phage Sfi21, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Moineauvirus.
DB of origin
REFSEQ
Length
40739
Host Name
Streptococcus thermophilus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
50
%GC
37.56
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_049986.1 NC_000872_p22 hypothetical protein phrog_8487 unknown function unknown function 1 22953 23285
NP_597805.1 NC_000872_p44 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision 1 36225 36617
NP_049992.1 NC_000872_p28 similar to cI-like repressor, metallo-prtoeinase motif phrog_87 metallo-protease other -1 26472 26840
NP_049967.1 NC_000872_p2 large subunit terminase phrog_9 terminase large subunit head and packaging 1 549 2420
NP_597807.1 NC_000872_p46 DNA binding protein phrog_1994 DNA binding protein DNA, RNA and nucleotide metabolism 1 37175 37687
NP_049974.1 NC_000872_p9 tail component protein phrog_5 tail completion or Neck1 protein connector 1 6318 6743
NP_597809.1 NC_000872_p48 hypothetical protein phrog_1814 unknown function unknown function 1 38506 39213
NP_050002.1 NC_000872_p39 primase phrog_864 DNA primase DNA, RNA and nucleotide metabolism 1 33367 34515
NP_049988.1 NC_000872_p24 hypothetical protein phrog_14794 unknown function unknown function 1 23559 23981
NP_049993.1 NC_000872_p29 cI-like repressor phrog_8 transcriptional regulator transcription regulation -1 26847 27230
NP_049982.1 NC_000872_p17 hypothetical protein phrog_1060 unknown function unknown function 1 20475 20828
NP_049987.1 NC_000872_p23 hypothetical protein phrog_33937 unknown function unknown function 1 23312 23536
NP_049985.1 NC_000872_p21 lysin phrog_998 endolysin lysis 1 21637 22503
NP_049980.1 NC_000872_p15 tail-host specificity protein phrog_588 tail fiber protein and host specificity tail 1 14613 18443
NP_049998.1 NC_000872_p35 nucleoside triphosphate binding motifs phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 29727 30428
NP_049991.1 NC_000872_p27 immunity region phrog_11491 unknown function unknown function -1 25777 26388
NP_049979.1 NC_000872_p14 tail component protein phrog_202 distal tail protein Dit tail 1 13066 14613
NP_049971.1 NC_000872_p6 major head protein phrog_10 major head protein head and packaging 1 4442 5635
NP_597811.1 NC_000872_p50 hypothetical protein singleton unknown function unknown function 1 40367 40618
NP_049970.1 NC_000872_p5 Predicted clp-protease phrog_94 head maturation protease head and packaging 1 3753 4427
NP_049978.1 NC_000872_p13 minor tail protein phrog_167 tail length tape measure protein tail 1 8378 13060
NP_597804.1 NC_000872_p43 hypothetical protein phrog_1489 unknown function unknown function 1 35883 36038
NP_049994.1 NC_000872_p30 cro-repressor phrog_3 transcriptional repressor transcription regulation 1 27383 27610
NP_049977.1 NC_000872_p12 tail component protein phrog_1346 tail protein tail 1 7806 8159
NP_049996.1 NC_000872_p32 hypothetical protein phrog_668 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 28379 28660
NP_049999.1 NC_000872_p36 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 30403 31734
NP_049989.1 NC_000872_p25 hypothetical protein phrog_8 transcriptional regulator transcription regulation 1 23983 24405
NP_049966.1 NC_000872_p1 small subunit terminase phrog_83 terminase small subunit head and packaging 1 69 527
NP_049969.1 NC_000872_p4 portal protein phrog_12 portal protein head and packaging 1 2621 3775
NP_049968.1 NC_000872_p3 head-tail-joining phrog_1142 unknown function unknown function 1 2424 2603
NP_049975.1 NC_000872_p10 tail component protein phrog_1217 tail protein tail 1 6744 7115
NP_049983.1 NC_000872_p19 holin phrog_199 holin lysis 1 20996 21421
NP_049972.1 NC_000872_p7 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 5648 5968
NP_049976.1 NC_000872_p11 major tail protein phrog_88 major tail protein tail 1 7136 7744
NP_049981.1 NC_000872_p16 minor structural protein phrog_372 tail protein tail 1 18446 20458
NP_050003.1 NC_000872_p40 similar to ATPase 1 phrog_9118 unknown function unknown function 1 34769 35200
NP_049995.1 NC_000872_p31 anti-repressor phrog_63 anti-repressor Ant transcription regulation 1 27495 28358
NP_049973.1 NC_000872_p8 head-tail joining protein phrog_25 head closure Hc1 connector 1 5961 6311
NP_597801.1 NC_000872_p33 hypothetical protein phrog_17359 unknown function unknown function 1 28720 28983
NP_597810.1 NC_000872_p49 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 39589 39987
NP_050001.1 NC_000872_p38 replication protein phrog_695 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 32199 33014
NP_050000.1 NC_000872_p37 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 31741 32196
NP_049990.1 NC_000872_p26 integrase phrog_1 integrase integration and excision -1 24595 25674
NP_597803.1 NC_000872_p42 hypothetical protein phrog_803 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 35713 35886
NP_597802.1 NC_000872_p41 hypothetical protein phrog_1982 unknown function unknown function 1 35486 35755
NP_049984.1 NC_000872_p20 holin phrog_297 holin lysis 1 21393 21656
NP_049997.1 NC_000872_p34 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 29257 29730
NP_597800.1 NC_000872_p18 hypothetical protein phrog_1567 unknown function unknown function 1 20835 20981
NP_597806.1 NC_000872_p45 hypothetical protein phrog_121 unknown function unknown function 1 36629 37174
NP_597808.1 NC_000872_p47 hypothetical protein phrog_884 unknown function unknown function 1 37671 38006