Genomic map of Lactobacillus phage phiadh (NC_000896)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_000896
Definition
Lactobacillus prophage phiadh, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
43785
Host Name
Lactobacillus gasseri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
63
%GC
35.57
Number of singletons
15
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_050157.1 NC_000896_p49 hypothetical protein phrog_19694 tail assembly chaperone tail 1 27570 28121
NP_050133.1 NC_000896_p25 hypothetical protein phrog_8 transcriptional regulator transcription regulation 1 13673 14011
NP_050118.1 NC_000896_p10 hypothetical protein phrog_6634 unknown function unknown function -1 4797 5045
NP_050131.1 NC_000896_p23 DNA-polymerase or DNA-primase phrog_1829 DNA primase DNA, RNA and nucleotide metabolism 1 10776 13091
NP_050155.1 NC_000896_p47 hypothetical protein phrog_1217 tail protein tail 1 26471 26842
NP_050163.1 NC_000896_p55 hypothetical protein phrog_12493 tail protein tail 1 35121 37316
NP_050127.1 NC_000896_p19 hypothetical protein phrog_3377 HNH endonuclease DNA, RNA and nucleotide metabolism 1 7927 8493
NP_050139.1 NC_000896_p31 hypothetical protein singleton unknown function unknown function 1 16045 16203
NP_050148.1 NC_000896_p40 hypothetical protein phrog_9 terminase large subunit head and packaging 1 20183 22057
NP_050170.1 NC_000896_p62 lysin phrog_291 endolysin lysis 1 41948 42901
NP_050117.1 NC_000896_p9 hypothetical protein phrog_38143 unknown function unknown function 1 4588 4800
NP_050123.1 NC_000896_p15 hypothetical protein singleton unknown function unknown function 1 6380 6547
NP_050140.1 NC_000896_p32 hypothetical protein singleton unknown function unknown function 1 16227 16448
NP_050128.1 NC_000896_p20 DEAH-family helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 8477 9844
NP_050145.1 NC_000896_p37 hypothetical protein phrog_248 transcriptional activator transcription regulation 1 18281 18748
NP_050150.1 NC_000896_p42 ClpP-like protease phrog_94 head maturation protease head and packaging 1 23389 24117
NP_050135.1 NC_000896_p27 hypothetical protein phrog_1945 unknown function unknown function 1 14654 15094
NP_050171.1 NC_000896_p63 hypothetical protein phrog_2277 unknown function unknown function 1 43444 43629
NP_050111.1 NC_000896_p3 hypothetical protein phrog_888 unknown function unknown function -1 1404 2288
NP_050152.1 NC_000896_p44 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 25322 25702
NP_050119.1 NC_000896_p11 hypothetical protein singleton unknown function unknown function -1 5166 5549
NP_050167.1 NC_000896_p59 hypothetical protein singleton unknown function unknown function 1 40943 41314
NP_050138.1 NC_000896_p30 hypothetical protein phrog_834 unknown function unknown function 1 15656 16012
NP_050136.1 NC_000896_p28 hypothetical protein singleton unknown function unknown function 1 15091 15435
NP_050165.1 NC_000896_p57 hypothetical protein phrog_16648 unknown function unknown function 1 40348 40812
NP_050142.1 NC_000896_p34 hypothetical protein singleton unknown function unknown function 1 16968 17348
NP_050166.1 NC_000896_p58 hypothetical protein phrog_134 unknown function unknown function 1 40825 41040
NP_050122.1 NC_000896_p14 hypothetical protein phrog_14447 unknown function unknown function 1 6221 6370
NP_050160.1 NC_000896_p52 hypothetical protein phrog_167 tail length tape measure protein tail 1 29327 33790
NP_050141.1 NC_000896_p33 hypothetical protein singleton unknown function unknown function 1 16517 17110
NP_050137.1 NC_000896_p29 hypothetical protein phrog_1494 unknown function unknown function 1 15462 15659
NP_050110.1 NC_000896_p2 hypothetical protein singleton unknown function unknown function 1 1357 1590
NP_050149.1 NC_000896_p41 hypothetical protein phrog_12 portal protein head and packaging 1 22245 23438
NP_050146.1 NC_000896_p38 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 19066 19578
NP_050116.1 NC_000896_p8 hypothetical protein phrog_8594 unknown function unknown function 1 4398 4616
NP_050144.1 NC_000896_p36 hypothetical protein phrog_11108 unknown function unknown function 1 17699 18190
NP_050129.1 NC_000896_p21 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 9991 10518
NP_050121.1 NC_000896_p13 hypothetical protein phrog_7989 unknown function unknown function 1 5996 6211
NP_050158.1 NC_000896_p50 hypothetical protein singleton unknown function unknown function 1 28069 28332
NP_050109.1 NC_000896_p1 integrase phrog_1 integrase integration and excision -1 89 1246
NP_050113.1 NC_000896_p5 Rad protein phrog_8 transcriptional regulator transcription regulation -1 2835 3161
NP_050168.1 NC_000896_p60 hypothetical protein phrog_6664 unknown function unknown function 1 41394 41603
NP_050153.1 NC_000896_p45 hypothetical protein phrog_25 head closure Hc1 connector 1 25659 26015
NP_050132.1 NC_000896_p24 hypothetical protein phrog_25157 unknown function unknown function 1 13470 13676
NP_050134.1 NC_000896_p26 hypothetical protein phrog_3409 unknown function unknown function 1 14015 14641
NP_050112.1 NC_000896_p4 hypothetical protein phrog_87 metallo-protease other -1 2441 2809
NP_050151.1 NC_000896_p43 major head protein phrog_10 major head protein head and packaging 1 24118 25305
NP_050124.1 NC_000896_p16 hypothetical protein singleton unknown function unknown function 1 6650 7000
NP_050130.1 NC_000896_p22 hypothetical protein singleton unknown function unknown function 1 10529 10762
NP_050156.1 NC_000896_p48 major tail protein phrog_88 major tail protein tail 1 26842 27555
NP_050162.1 NC_000896_p54 hypothetical protein phrog_7142 tail protein tail 1 34517 35242
NP_050125.1 NC_000896_p17 hypothetical protein phrog_7634 unknown function unknown function 1 6993 7259
NP_050161.1 NC_000896_p53 hypothetical protein phrog_33 distal tail protein Dit tail 1 33777 34520
NP_050159.1 NC_000896_p51 hypothetical protein phrog_10613 tail length tape measure protein tail 1 28332 29240
NP_050114.1 NC_000896_p6 Tec protein singleton unknown function unknown function 1 3598 3813
NP_050143.1 NC_000896_p35 hypothetical protein singleton unknown function unknown function 1 17332 17604
NP_050126.1 NC_000896_p18 NTP-binding motif protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7259 7930
NP_050115.1 NC_000896_p7 hypothetical protein singleton unknown function unknown function 1 3916 4395
NP_050154.1 NC_000896_p46 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 26008 26487
NP_050164.1 NC_000896_p56 hypothetical protein phrog_26580 unknown function unknown function 1 37472 40288
NP_050120.1 NC_000896_p12 hypothetical protein phrog_1337 DNA binding protein DNA, RNA and nucleotide metabolism 1 5786 5983
NP_050147.1 NC_000896_p39 hypothetical protein phrog_83 terminase small subunit head and packaging 1 19737 20186
NP_050169.1 NC_000896_p61 holin phrog_19508 holin lysis 1 41600 41944