Genomic map of Enterobacteria phage VT2-Sakai (Bacteriophage VT2-Sa) (NC_000902)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_000902
Definition
Enterobacteria phage VT2-Sakai, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Sepvirinae; Traversvirus; unclassified Traversvirus.
DB of origin
REFSEQ
Length
60942
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
83
%GC
49.91
Number of singletons
1
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_050565.1 NC_000902_p69 hypothetical protein phrog_610 unknown function unknown function 1 44898 45299
NP_050539.1 NC_000902_p43 Shiga toxin 2 subunit A phrog_866 Shiga toxin subunit A moron, auxiliary metabolic gene and host takeover 1 20953 21912
NP_050547.1 NC_000902_p51 hypothetical protein phrog_6954 Rz-like spanin lysis 1 27500 27760
NP_050544.1 NC_000902_p48 cell lysis protein phrog_7 endolysin lysis 1 25518 26051
NP_050568.1 NC_000902_p72 hypothetical protein phrog_594 unknown function unknown function 1 46508 46759
NP_050574.1 NC_000902_p78 hypothetical protein phrog_1621 unknown function unknown function -1 57947 58417
NP_050525.1 NC_000902_p29 similar to O protein of bacteriophage HK022 phrog_345 replication initiation O-like DNA, RNA and nucleotide metabolism 1 12496 13395
NP_050529.1 NC_000902_p33 hypothetical protein phrog_599 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover 1 15792 16034
NP_050542.1 NC_000902_p46 hypothetical protein phrog_8301 unknown function unknown function 1 24801 25220
NP_050518.1 NC_000902_p20 hypothetical protein phrog_31828 unknown function unknown function -1 8469 8624
NP_050578.1 NC_000902_p82 DksA-like zinc finger domain containing protein phrog_54 DksA-like zinc-finger protein other -1 59508 59729
NP_050523.1 NC_000902_p27 similar to C2 of bacteriophage L phrog_3 transcriptional repressor transcription regulation 1 11671 11886
NP_050511.1 NC_000902_p13 hypothetical protein phrog_1998 unknown function unknown function -1 5648 5836
NP_050550.1 NC_000902_p54 hypothetical protein phrog_156 portal protein head and packaging 1 30309 32453
NP_050573.1 NC_000902_p77 hypothetical protein phrog_251 MokW-like host killing moron, auxiliary metabolic gene and host takeover -1 57501 57713
NP_050512.1 NC_000902_p14 exonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 5827 6507
NP_050532.1 NC_000902_p36 similar to nin 60 protein of bacteriophage lambda phrog_288 unknown function unknown function 1 16958 17140
NP_050564.1 NC_000902_p68 similar to Lom protein of bacteriophage lambda phrog_108 Lom outer membrane protein other 1 43734 44468
NP_050537.1 NC_000902_p41 similar to nin 68 protein of bacteriophage lambda phrog_268 unknown function unknown function 1 19548 19742
NP_050563.1 NC_000902_p67 hypothetical protein phrog_425 membrane associated protein moron, auxiliary metabolic gene and host takeover 1 43026 43643
NP_050575.1 NC_000902_p79 hypothetical protein phrog_60 unknown function unknown function -1 58342 59001
NP_050572.1 NC_000902_p76 hypothetical protein phrog_1230 unknown function unknown function -1 57037 57381
NP_050505.1 NC_000902_p6 hypothetical protein phrog_1832 released from the phage upon host infection other -1 3325 3543
NP_050555.1 NC_000902_p59 hypothetical protein phrog_437 virion structural protein head and packaging 1 35688 36359
NP_050500.1 NC_000902_p1 integrase phrog_1 integrase integration and excision -1 29 1363
NP_050535.1 NC_000902_p39 roi phrog_63 anti-repressor Ant transcription regulation 1 18218 18946
NP_050551.1 NC_000902_p55 hypothetical protein phrog_479 unknown function unknown function 1 32611 33618
NP_050503.1 NC_000902_p4 hypothetical protein phrog_60 unknown function unknown function -1 2133 3032
NP_050558.1 NC_000902_p62 hypothetical protein phrog_576 tail fiber protein tail 1 38825 39214
NP_050520.1 NC_000902_p22 antitermination protein phrog_271 anti-termination protein N-like transcription regulation -1 8876 9220
NP_050514.1 NC_000902_p16 gam phrog_259 gam-like host nuclease inhibitor moron, auxiliary metabolic gene and host takeover -1 7295 7711
NP_050536.1 NC_000902_p40 similar to nin 204 protein of bacteriophage lambda phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism 1 18946 19551
NP_050553.1 NC_000902_p57 hypothetical protein phrog_486 virion structural protein head and packaging 1 34912 35301
NP_050561.1 NC_000902_p65 hypothetical protein phrog_496 tail fiber protein tail 1 41459 42727
NP_050526.1 NC_000902_p30 similar to P protein of bacteriophage HK022 phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 13370 14821
NP_597694.1 NC_000902_p23 hypothetical protein phrog_14935 unknown function unknown function 1 9605 9766
NP_050513.1 NC_000902_p15 bet phrog_252 Bet-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 6504 7289
NP_050504.1 NC_000902_p5 hypothetical protein phrog_2821 unknown function unknown function -1 3036 3323
NP_050579.1 NC_000902_p83 hypothetical protein phrog_377 anti-repressor Ant transcription regulation -1 59777 60406
NP_050548.1 NC_000902_p52 hypothetical protein phrog_370 terminase small subunit head and packaging 1 27816 28622
NP_050531.1 NC_000902_p35 similar to DNA methylase phrog_111 DNA methyltransferase other 1 16434 16961
NP_050554.1 NC_000902_p58 hypothetical protein phrog_482 unknown function unknown function 1 35324 35812
NP_050534.1 NC_000902_p38 similar to antirepressor of bacteriophage P22 phrog_377 anti-repressor Ant transcription regulation 1 17415 18149
NP_050567.1 NC_000902_p71 hypothetical protein phrog_596 unknown function unknown function 1 46052 46498
NP_050538.1 NC_000902_p42 antitermination protein phrog_79 anti-termination protein Q-like transcription regulation 1 19696 20169
NP_050502.1 NC_000902_p3 hypothetical protein phrog_3680 unknown function unknown function -1 1762 2073
NP_050549.1 NC_000902_p53 hypothetical protein phrog_2 terminase large subunit head and packaging 1 28603 30309
NP_050540.1 NC_000902_p44 Shiga toxin 2 subunit B phrog_851 Shiga toxin subunit B moron, auxiliary metabolic gene and host takeover 1 21924 22193
NP_597695.1 NC_000902_p26 c1 repressor protein fragment singleton unknown function unknown function -1 11467 11595
NP_050559.1 NC_000902_p63 hypothetical protein phrog_2014 unknown function unknown function 1 39261 39542
NP_050508.1 NC_000902_p9 hypothetical protein phrog_250 unknown function unknown function -1 4102 4875
NP_050515.1 NC_000902_p17 kil phrog_2461 Kil protein for bacterial septation inhibition other -1 7666 7935
NP_050545.1 NC_000902_p49 similar to antirepressor of bacteriophage P22 phrog_524 anti-repressor Ant transcription regulation 1 26322 26891
NP_050527.1 NC_000902_p31 hypothetical protein phrog_2239 unknown function unknown function 1 14821 15090
NP_050530.1 NC_000902_p34 similar to nin 146 protein of bacteriophage lambda phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 15892 16437
NP_050533.1 NC_000902_p37 hypothetical protein phrog_20442 unknown function unknown function 1 17245 17418
NP_050570.1 NC_000902_p74 hypothetical protein phrog_616 unknown function unknown function 1 48066 56486
NP_050560.1 NC_000902_p64 hypothetical protein phrog_511 internal virion protein head and packaging 1 39759 41462
NP_050577.1 NC_000902_p81 hypothetical protein phrog_667 unknown function unknown function -1 59227 59511
NP_050507.1 NC_000902_p8 hypothetical protein phrog_12350 unknown function unknown function -1 3762 4229
NP_050566.1 NC_000902_p70 hypothetical protein phrog_611 unknown function unknown function 1 45393 46049
NP_050562.1 NC_000902_p66 hypothetical protein phrog_557 outer membrane protein other 1 42793 43020
NP_050576.1 NC_000902_p80 hypothetical protein phrog_6389 unknown function unknown function -1 59022 59252
NP_050543.1 NC_000902_p47 lysis protein phrog_20 holin lysis 1 25223 25513
YP_089649.1 NC_000902_p10 DksA-like zinc finger domain containing protein phrog_54 DksA-like zinc-finger protein other -1 4872 5093
NP_050569.1 NC_000902_p73 hypothetical protein phrog_601 unknown function unknown function 1 46770 48035
NP_050517.1 NC_000902_p19 ea10 phrog_646 unknown function unknown function -1 8015 8383
NP_050528.1 NC_000902_p32 hypothetical protein phrog_343 unknown function unknown function 1 15161 15439
NP_050552.1 NC_000902_p56 hypothetical protein phrog_334 major head protein head and packaging 1 33642 34856
NP_050509.1 NC_000902_p11 hypothetical protein phrog_303 unknown function unknown function -1 5192 5473
NP_050522.1 NC_000902_p25 similar to CI repressor phrog_8558 unknown function unknown function -1 10900 11409
NP_050571.1 NC_000902_p75 hypothetical protein phrog_1925 unknown function unknown function 1 56769 56957
NP_050501.1 NC_000902_p2 excisionase phrog_539 excisionase integration and excision -1 1392 1691
NP_050556.1 NC_000902_p60 hypothetical protein phrog_399 structural protein head and packaging 1 36359 37009
NP_050521.1 NC_000902_p24 hypothetical protein phrog_2602 unknown function unknown function -1 9877 10398
NP_050546.1 NC_000902_p50 Rz phrog_13 Rz-like spanin lysis 1 27045 27512
NP_050557.1 NC_000902_p61 hypothetical protein phrog_366 tail fiber protein tail 1 37006 38943
NP_050516.1 NC_000902_p18 cIII phrog_550 CIII anti-termination transcription regulation -1 7778 7942
NP_050510.1 NC_000902_p12 hypothetical protein phrog_292 unknown function unknown function -1 5484 5675
NP_050519.1 NC_000902_p21 hypothetical protein phrog_2471 unknown function unknown function -1 8566 8817
NP_050506.1 NC_000902_p7 hypothetical protein phrog_926 unknown function unknown function -1 3545 3832
NP_050524.1 NC_000902_p28 cII phrog_191 CII-like transcriptional activator transcription regulation 1 12028 12324
NP_050541.1 NC_000902_p45 similar to YjhS protein of Escherichia coli phrog_143 unknown function unknown function 1 22680 24617