| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_001271 |
Definition |
Yersinia phage phiYeO3-12, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teetrevirus; Yersinia virus YeO3-12. |
DB of origin |
REFSEQ |
Length |
39600 |
Host Name |
Yersinia enterocolitica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
50.63 |
Number of singletons |
0 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_052073.1 | NC_001271_p8 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 6419 | 6559 |
| NP_052104.1 | NC_001271_p38 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 18249 | 18500 |
| NP_052075.1 | NC_001271_p10 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 6933 | 7973 |
| NP_052070.1 | NC_001271_p5 | protein kinase | phrog_2828 | serine-threonine kinase | other | 1 | 2133 | 3242 |
| NP_052093.1 | NC_001271_p27 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13779 | 15893 |
| NP_052107.1 | NC_001271_p41 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 20568 | 21500 |
| NP_052097.1 | NC_001271_p31 | host protein H-NS-interacting protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 16213 | 16518 |
| NP_052076.1 | NC_001271_p11 | 1.45 protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 7903 | 8376 |
| NP_052123.1 | NC_001271_p57 | hypothetical protein | phrog_8982 | unknown function | unknown function | 1 | 37602 | 37835 |
| NP_052100.1 | NC_001271_p34 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16900 | 17811 |
| NP_052122.1 | NC_001271_p56 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 36953 | 38716 |
| NP_052120.1 | NC_001271_p54 | phage lambda Rz-like lysis protein | phrog_1327 | Rz-like spanin | lysis | 1 | 36526 | 36978 |
| NP_052108.1 | NC_001271_p42 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 21657 | 22957 |
| NP_052102.1 | NC_001271_p36 | 6.3 protein | phrog_5008 | unknown function | unknown function | 1 | 17793 | 17906 |
| NP_052071.1 | NC_001271_p6 | T3/T7-like RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3313 | 5967 |
| NP_052098.1 | NC_001271_p32 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 16515 | 16724 |
| NP_052081.1 | NC_001271_p16 | inhibitor of host bacterial RNA polymerase | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 9330 | 9566 |
| NP_052101.1 | NC_001271_p35 | 6.1 protein | phrog_36692 | unknown function | unknown function | 1 | 16937 | 17167 |
| NP_052086.1 | NC_001271_p20 | 3.7 protein | phrog_17413 | unknown function | unknown function | 1 | 11231 | 11338 |
| NP_072070.1 | NC_001271_p2 | 0.45 protein | phrog_6500 | unknown function | unknown function | 1 | 1558 | 1758 |
| NP_052096.1 | NC_001271_p30 | fusion 5.5-5.7 protein | phrog_17900 | unknown function | unknown function | 1 | 16213 | 16724 |
| NP_052078.1 | NC_001271_p13 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 8482 | 8739 |
| NP_052106.1 | NC_001271_p40 | head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 18859 | 20466 |
| NP_052109.1 | NC_001271_p43 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 21657 | 22700 |
| NP_072072.1 | NC_001271_p47 | 13.5 protein | phrog_2633 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 26688 | 27077 |
| NP_052115.1 | NC_001271_p49 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 27676 | 29919 |
| NP_052124.1 | NC_001271_p58 | hypothetical protein | phrog_8173 | unknown function | unknown function | 1 | 38139 | 38267 |
| NP_052118.1 | NC_001271_p52 | type II holin | phrog_920 | holin | lysis | 1 | 35962 | 36165 |
| NP_052095.1 | NC_001271_p29 | 5.3 protein | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 15903 | 16235 |
| NP_052068.1 | NC_001271_p4 | 0.6A protein | phrog_2385 | unknown function | unknown function | 1 | 1758 | 1961 |
| NP_052110.1 | NC_001271_p44 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 23191 | 23781 |
| NP_052117.1 | NC_001271_p51 | tail fiber protein | phrog_9502 | tail fiber protein | tail | 1 | 33972 | 35909 |
| NP_052072.1 | NC_001271_p7 | 1.05 protein | phrog_6379 | unknown function | unknown function | 1 | 6054 | 6326 |
| NP_052088.1 | NC_001271_p22 | helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11592 | 13106 |
| NP_052121.1 | NC_001271_p55 | phage lambda Rz1-like protein | phrog_4306 | Rz-like spanin | lysis | 1 | 36641 | 36895 |
| NP_052091.1 | NC_001271_p25 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 13202 | 13414 |
| NP_052089.1 | NC_001271_p23 | 4.15 protein | phrog_37827 | unknown function | unknown function | 1 | 11672 | 11779 |
| NP_052084.1 | NC_001271_p19 | lysozyme | phrog_822 | amidase | lysis | 1 | 10771 | 11226 |
| NP_052087.1 | NC_001271_p21 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11406 | 13106 |
| NP_052116.1 | NC_001271_p50 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29938 | 33900 |
| NP_052082.1 | NC_001271_p17 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 9619 | 10317 |
| NP_052092.1 | NC_001271_p26 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 13427 | 13711 |
| NP_052065.1 | NC_001271_p1 | S-adenosyl-L-methionine hydrolase | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 1035 | 1493 |
| NP_052119.1 | NC_001271_p53 | DNA packaging protein, small subunit | phrog_1351 | terminase small subunit | head and packaging | 1 | 36169 | 36435 |
| NP_052125.1 | NC_001271_p59 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 38959 | 39108 |
| NP_052094.1 | NC_001271_p28 | 5B protein | phrog_15971 | DNA polymerase I | DNA, RNA and nucleotide metabolism | 1 | 14739 | 15893 |
| NP_052112.1 | NC_001271_p46 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 26275 | 26691 |
| NP_052083.1 | NC_001271_p18 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10317 | 10778 |
| NP_052111.1 | NC_001271_p45 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 23797 | 26202 |
| NP_052067.1 | NC_001271_p3 | 0.6B protein | phrog_2385 | unknown function | unknown function | 1 | 1758 | 2118 |
| NP_072071.1 | NC_001271_p33 | host recBCD nuclease inhibitor | phrog_4790 | host RecBCD nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 16721 | 16903 |
| NP_052077.1 | NC_001271_p12 | 1.5 protein | phrog_10145 | unknown function | unknown function | 1 | 8392 | 8469 |
| NP_052074.1 | NC_001271_p9 | host dGTPase inhibitor | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 6562 | 6837 |
| NP_052080.1 | NC_001271_p15 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 9196 | 9333 |
| NP_052079.1 | NC_001271_p14 | 1.7 protein | phrog_4943 | unknown function | unknown function | 1 | 8739 | 9209 |
| NP_052105.1 | NC_001271_p39 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18528 | 18848 |
| NP_052114.1 | NC_001271_p48 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 27080 | 27673 |
| NP_052090.1 | NC_001271_p24 | hypothetical protein | phrog_5140 | unknown function | unknown function | 1 | 12826 | 13155 |
| NP_052103.1 | NC_001271_p37 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 17999 | 18244 |