Genomic map of Yersinia phage phiYeO3-12 (NC_001271)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_001271
Definition
Yersinia phage phiYeO3-12, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teetrevirus; Yersinia virus YeO3-12.
DB of origin
REFSEQ
Length
39600
Host Name
Yersinia enterocolitica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
59
%GC
50.63
Number of singletons
0
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_052073.1 NC_001271_p8 hypothetical protein phrog_2490 unknown function unknown function 1 6419 6559
NP_052104.1 NC_001271_p38 hypothetical protein phrog_1391 unknown function unknown function 1 18249 18500
NP_052075.1 NC_001271_p10 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 6933 7973
NP_052070.1 NC_001271_p5 protein kinase phrog_2828 serine-threonine kinase other 1 2133 3242
NP_052093.1 NC_001271_p27 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 13779 15893
NP_052107.1 NC_001271_p41 capsid assembly protein phrog_1052 head assembly head and packaging 1 20568 21500
NP_052097.1 NC_001271_p31 host protein H-NS-interacting protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 16213 16518
NP_052076.1 NC_001271_p11 1.45 protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 7903 8376
NP_052123.1 NC_001271_p57 hypothetical protein phrog_8982 unknown function unknown function 1 37602 37835
NP_052100.1 NC_001271_p34 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 16900 17811
NP_052122.1 NC_001271_p56 DNA packaging protein B phrog_38 terminase large subunit head and packaging 1 36953 38716
NP_052120.1 NC_001271_p54 phage lambda Rz-like lysis protein phrog_1327 Rz-like spanin lysis 1 36526 36978
NP_052108.1 NC_001271_p42 major capsid protein phrog_267 major head protein head and packaging 1 21657 22957
NP_052102.1 NC_001271_p36 6.3 protein phrog_5008 unknown function unknown function 1 17793 17906
NP_052071.1 NC_001271_p6 T3/T7-like RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 3313 5967
NP_052098.1 NC_001271_p32 hypothetical protein phrog_1334 unknown function unknown function 1 16515 16724
NP_052081.1 NC_001271_p16 inhibitor of host bacterial RNA polymerase phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 9330 9566
NP_052101.1 NC_001271_p35 6.1 protein phrog_36692 unknown function unknown function 1 16937 17167
NP_052086.1 NC_001271_p20 3.7 protein phrog_17413 unknown function unknown function 1 11231 11338
NP_072070.1 NC_001271_p2 0.45 protein phrog_6500 unknown function unknown function 1 1558 1758
NP_052096.1 NC_001271_p30 fusion 5.5-5.7 protein phrog_17900 unknown function unknown function 1 16213 16724
NP_052078.1 NC_001271_p13 hypothetical protein phrog_1777 unknown function unknown function 1 8482 8739
NP_052106.1 NC_001271_p40 head-to-tail joining protein phrog_449 head-tail adaptor connector 1 18859 20466
NP_052109.1 NC_001271_p43 major capsid protein phrog_267 major head protein head and packaging 1 21657 22700
NP_072072.1 NC_001271_p47 13.5 protein phrog_2633 endonuclease VII DNA, RNA and nucleotide metabolism 1 26688 27077
NP_052115.1 NC_001271_p49 internal virion protein C phrog_1339 internal virion protein head and packaging 1 27676 29919
NP_052124.1 NC_001271_p58 hypothetical protein phrog_8173 unknown function unknown function 1 38139 38267
NP_052118.1 NC_001271_p52 type II holin phrog_920 holin lysis 1 35962 36165
NP_052095.1 NC_001271_p29 5.3 protein phrog_1872 endonuclease DNA, RNA and nucleotide metabolism 1 15903 16235
NP_052068.1 NC_001271_p4 0.6A protein phrog_2385 unknown function unknown function 1 1758 1961
NP_052110.1 NC_001271_p44 tail tubular protein A phrog_446 tail protein tail 1 23191 23781
NP_052117.1 NC_001271_p51 tail fiber protein phrog_9502 tail fiber protein tail 1 33972 35909
NP_052072.1 NC_001271_p7 1.05 protein phrog_6379 unknown function unknown function 1 6054 6326
NP_052088.1 NC_001271_p22 helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 11592 13106
NP_052121.1 NC_001271_p55 phage lambda Rz1-like protein phrog_4306 Rz-like spanin lysis 1 36641 36895
NP_052091.1 NC_001271_p25 hypothetical protein phrog_1950 unknown function unknown function 1 13202 13414
NP_052089.1 NC_001271_p23 4.15 protein phrog_37827 unknown function unknown function 1 11672 11779
NP_052084.1 NC_001271_p19 lysozyme phrog_822 amidase lysis 1 10771 11226
NP_052087.1 NC_001271_p21 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 11406 13106
NP_052116.1 NC_001271_p50 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 29938 33900
NP_052082.1 NC_001271_p17 single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 9619 10317
NP_052092.1 NC_001271_p26 hypothetical protein phrog_2254 unknown function unknown function 1 13427 13711
NP_052065.1 NC_001271_p1 S-adenosyl-L-methionine hydrolase phrog_2226 SAM-dependent methyltransferase other 1 1035 1493
NP_052119.1 NC_001271_p53 DNA packaging protein, small subunit phrog_1351 terminase small subunit head and packaging 1 36169 36435
NP_052125.1 NC_001271_p59 hypothetical protein phrog_2193 unknown function unknown function 1 38959 39108
NP_052094.1 NC_001271_p28 5B protein phrog_15971 DNA polymerase I DNA, RNA and nucleotide metabolism 1 14739 15893
NP_052112.1 NC_001271_p46 internal virion protein A phrog_308 internal virion protein head and packaging 1 26275 26691
NP_052083.1 NC_001271_p18 endonuclease I phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 10317 10778
NP_052111.1 NC_001271_p45 tail tubular protein B phrog_457 tail protein tail 1 23797 26202
NP_052067.1 NC_001271_p3 0.6B protein phrog_2385 unknown function unknown function 1 1758 2118
NP_072071.1 NC_001271_p33 host recBCD nuclease inhibitor phrog_4790 host RecBCD nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 16721 16903
NP_052077.1 NC_001271_p12 1.5 protein phrog_10145 unknown function unknown function 1 8392 8469
NP_052074.1 NC_001271_p9 host dGTPase inhibitor phrog_2949 dGTPase inhibitor; target for F exclusion other 1 6562 6837
NP_052080.1 NC_001271_p15 hypothetical protein phrog_1312 unknown function unknown function 1 9196 9333
NP_052079.1 NC_001271_p14 1.7 protein phrog_4943 unknown function unknown function 1 8739 9209
NP_052105.1 NC_001271_p39 tail assembly protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18528 18848
NP_052114.1 NC_001271_p48 internal virion protein B phrog_805 internal virion protein head and packaging 1 27080 27673
NP_052090.1 NC_001271_p24 hypothetical protein phrog_5140 unknown function unknown function 1 12826 13155
NP_052103.1 NC_001271_p37 hypothetical protein phrog_1447 unknown function unknown function 1 17999 18244