Genomic map of Mycobacterium virus L5 (NC_001335)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_001335
Definition
Mycobacterium phage L5 complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus.
DB of origin
REFSEQ
Length
52297
Host Name
Mycobacterium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
90
%GC
62.25
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_039679.1 NC_001335_p12 Capsid Maturation Protease phrog_193 head maturation protease head and packaging 1 9861 10745
YP_009000607.1 NC_001335_p22 Tail assembly chaperone phrog_393 tail assembly chaperone tail 1 14987 15804
NP_039739.1 NC_001335_p76 hypothetical protein phrog_1477 unknown function unknown function -1 45884 46015
NP_039690.1 NC_001335_p24 Tapemeasure phrog_305 tail length tape measure protein tail 1 15794 18307
NP_039737.1 NC_001335_p74 hypothetical protein phrog_14127 unknown function unknown function -1 45364 45621
NP_039721.1 NC_001335_p57 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 37810 38268
NP_039731.1 NC_001335_p67 hypothetical protein phrog_2731 unknown function unknown function -1 42213 42344
NP_039734.1 NC_001335_p71 hypothetical protein phrog_1562 unknown function unknown function -1 43839 44276
NP_039674.1 NC_001335_p7 Lysin A phrog_317 endolysin lysis 1 4581 5459
NP_039671.1 NC_001335_p4 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2332 2628
NP_039738.1 NC_001335_p75 hypothetical protein phrog_5371 unknown function unknown function -1 45666 45884
NP_039675.1 NC_001335_p8 Holin phrog_526 holin lysis 1 5456 5851
NP_039678.1 NC_001335_p11 Portal phrog_104 portal protein head and packaging 1 8404 9864
NP_039712.1 NC_001335_p47 ThyX-like phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 31607 32338
NP_039680.1 NC_001335_p13 Scaffolding phrog_233 head scaffolding protein head and packaging 1 10797 11318
NP_039695.1 NC_001335_p29 Minor tail protein phrog_737 minor tail protein tail 1 21890 23536
NP_039750.1 NC_001335_p87 hypothetical protein phrog_3207 unknown function unknown function -1 49217 49483
NP_039732.1 NC_001335_p68 hypothetical protein phrog_520 unknown function unknown function -1 42341 42580
NP_039668.1 NC_001335_p1 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 411 1100
NP_039741.1 NC_001335_p78 hypothetical protein phrog_421 unknown function unknown function -1 46290 47048
NP_039742.1 NC_001335_p79 hypothetical protein phrog_855 unknown function unknown function -1 47051 47188
NP_039740.1 NC_001335_p77 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 46015 46290
NP_039696.1 NC_001335_p30 hypothetical protein phrog_356 minor tail protein tail 1 23536 24198
NP_039704.1 NC_001335_p38 hypothetical protein singleton unknown function unknown function -1 27656 27769
NP_039720.1 NC_001335_p56 NrdH-like phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 37499 37810
YP_009000609.1 NC_001335_p42 hypothetical protein phrog_1545 unknown function unknown function -1 28499 28678
NP_039724.1 NC_001335_p60 hypothetical protein phrog_1498 unknown function unknown function -1 39379 39522
NP_039676.1 NC_001335_p9 Lysin B phrog_102 endolysin lysis 1 5848 6612
NP_039735.1 NC_001335_p72 Immunity repressor phrog_357 transcriptional repressor transcription regulation -1 44331 44882
NP_039743.1 NC_001335_p80 hypothetical protein phrog_828 unknown function unknown function -1 47199 47417
NP_039728.1 NC_001335_p64 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision -1 40369 40755
NP_039726.1 NC_001335_p62 hypothetical protein phrog_3369 unknown function unknown function -1 39896 40051
NP_039733.1 NC_001335_p70 RecB-like phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 42970 43842
NP_039719.1 NC_001335_p55 hypothetical protein phrog_1167 phosphofructokinase other -1 37032 37502
NP_039729.1 NC_001335_p65 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 40787 41593
NP_039746.1 NC_001335_p83 hypothetical protein phrog_586 unknown function unknown function -1 48137 48517
NP_039707.1 NC_001335_p41 hypothetical protein phrog_25458 unknown function unknown function -1 28266 28499
NP_039736.1 NC_001335_p73 hypothetical protein phrog_2869 unknown function unknown function -1 45180 45356
NP_039708.1 NC_001335_p43 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 28689 30476
NP_039744.1 NC_001335_p81 hypothetical protein phrog_2223 unknown function unknown function -1 47470 47748
NP_039684.1 NC_001335_p18 hypothetical protein phrog_320 head closure Hc1 connector 1 13127 13495
NP_039700.1 NC_001335_p34 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision -1 26557 26727
NP_039715.1 NC_001335_p50 hypothetical protein phrog_2046 unknown function unknown function -1 35042 35245
NP_039752.1 NC_001335_p89 hypothetical protein phrog_1392 unknown function unknown function -1 49663 50382
NP_039699.1 NC_001335_p33 hypothetical protein phrog_2697 unknown function unknown function -1 26329 26547
NP_039673.1 NC_001335_p6 minor tail subunit phrog_1260 minor tail protein tail 1 3209 4150
NP_039669.1 NC_001335_p2 hypothetical protein phrog_8314 unknown function unknown function 1 1305 2084
NP_039694.1 NC_001335_p28 Minor tail protein phrog_404 minor tail protein tail 1 21588 21893
NP_039747.1 NC_001335_p84 hypothetical protein phrog_9458 unknown function unknown function -1 48514 48732
NP_039682.1 NC_001335_p15 hypothetical protein phrog_748 head-tail connector protein connector 1 12382 12555
YP_009000608.1 NC_001335_p32 hypothetical protein phrog_733 excisionase integration and excision 1 25777 26220
NP_039693.1 NC_001335_p27 Minor tail subunit phrog_352 minor tail protein tail 1 21148 21591
NP_039730.1 NC_001335_p66 Phosphoesterase phrog_547 phosphoesterase other -1 41580 42203
NP_039717.1 NC_001335_p52 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 35411 36115
NP_039697.1 NC_001335_p31 Integrase (Y-int) phrog_1 integrase integration and excision -1 24254 25369
NP_039722.1 NC_001335_p58 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38270 38662
NP_039701.1 NC_001335_p35 hypothetical protein phrog_229 MazG-like pyrophosphatase other -1 26747 27091
NP_039711.1 NC_001335_p46 hypothetical protein phrog_690 unknown function unknown function -1 31386 31595
NP_039686.1 NC_001335_p20 hypothetical protein phrog_123 tail terminator connector 1 13840 14259
NP_039709.1 NC_001335_p44 hypothetical protein phrog_4326 unknown function unknown function -1 30486 30779
NP_039748.1 NC_001335_p85 hypothetical protein phrog_1946 unknown function unknown function -1 48729 48929
NP_039749.1 NC_001335_p86 hypothetical protein phrog_20451 unknown function unknown function -1 48937 49203
NP_039692.1 NC_001335_p26 Minor tail protein phrog_110 minor tail protein tail 1 19340 21130
NP_039687.1 NC_001335_p21 hypothetical protein phrog_117 major tail protein tail 1 14277 14873
NP_039745.1 NC_001335_p82 hypothetical protein phrog_3256 unknown function unknown function -1 47780 48115
NP_039683.1 NC_001335_p16 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 12559 12936
NP_039691.1 NC_001335_p25 Minor tail protein phrog_106 minor tail protein tail 1 18333 19343
NP_039725.1 NC_001335_p61 hypothetical protein phrog_289 GTP-binding domain other -1 39519 39896
NP_039716.1 NC_001335_p51 hypothetical protein phrog_499 unknown function unknown function -1 35242 35427
NP_039706.1 NC_001335_p40 hypothetical protein phrog_896 unknown function unknown function -1 28048 28266
NP_039702.1 NC_001335_p36 hypothetical protein phrog_542 unknown function unknown function -1 27091 27243
NP_039688.1 NC_001335_p23 Tail assembly chaperone phrog_330 tail assembly chaperone tail 1 14987 15385
NP_039670.1 NC_001335_p3 hypothetical protein phrog_8551 unknown function unknown function 1 2084 2335
YP_009000612.1 NC_001335_p90 hypothetical protein phrog_1676 unknown function unknown function -1 50786 51082
NP_039727.1 NC_001335_p63 hypothetical protein phrog_397 unknown function unknown function -1 40048 40284
NP_039751.1 NC_001335_p88 hypothetical protein phrog_519 unknown function unknown function -1 49493 49654
NP_039710.1 NC_001335_p45 HTH DNA binding phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 30961 31389
YP_009000606.1 NC_001335_p17 hypothetical protein phrog_830 head-tail connector protein connector 1 12933 13127
NP_039713.1 NC_001335_p48 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 32457 32996
NP_039677.1 NC_001335_p10 Terminase phrog_9 terminase large subunit head and packaging 1 6626 8407
YP_009000610.1 NC_001335_p53 hypothetical protein phrog_2436 unknown function unknown function -1 36112 36264
YP_009000611.1 NC_001335_p69 hypothetical protein phrog_642 unknown function unknown function -1 42657 42962
NP_039703.1 NC_001335_p37 hypothetical protein phrog_383 unknown function unknown function -1 27240 27659
NP_039681.1 NC_001335_p14 Major Capsid phrog_10 major head protein head and packaging 1 11351 12331
NP_039714.1 NC_001335_p49 Ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 32993 35041
NP_039705.1 NC_001335_p39 hypothetical protein phrog_2099 unknown function unknown function -1 27770 28021
NP_039685.1 NC_001335_p19 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 13495 13830
NP_039718.1 NC_001335_p54 phosphoesterase phrog_221 metallo-phosphoesterase other -1 36268 37035
NP_039723.1 NC_001335_p59 Endo VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 38794 39288
NP_039672.1 NC_001335_p5 hypothetical protein phrog_226 minor tail protein tail 1 2665 3132