| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_001335 |
Definition |
Mycobacterium phage L5 complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
52297 |
Host Name |
Mycobacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
90 |
%GC |
62.25 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_039679.1 | NC_001335_p12 | Capsid Maturation Protease | phrog_193 | head maturation protease | head and packaging | 1 | 9861 | 10745 |
| YP_009000607.1 | NC_001335_p22 | Tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 14987 | 15804 |
| NP_039739.1 | NC_001335_p76 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 45884 | 46015 |
| NP_039690.1 | NC_001335_p24 | Tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 15794 | 18307 |
| NP_039737.1 | NC_001335_p74 | hypothetical protein | phrog_14127 | unknown function | unknown function | -1 | 45364 | 45621 |
| NP_039721.1 | NC_001335_p57 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37810 | 38268 |
| NP_039731.1 | NC_001335_p67 | hypothetical protein | phrog_2731 | unknown function | unknown function | -1 | 42213 | 42344 |
| NP_039734.1 | NC_001335_p71 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 43839 | 44276 |
| NP_039674.1 | NC_001335_p7 | Lysin A | phrog_317 | endolysin | lysis | 1 | 4581 | 5459 |
| NP_039671.1 | NC_001335_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2332 | 2628 |
| NP_039738.1 | NC_001335_p75 | hypothetical protein | phrog_5371 | unknown function | unknown function | -1 | 45666 | 45884 |
| NP_039675.1 | NC_001335_p8 | Holin | phrog_526 | holin | lysis | 1 | 5456 | 5851 |
| NP_039678.1 | NC_001335_p11 | Portal | phrog_104 | portal protein | head and packaging | 1 | 8404 | 9864 |
| NP_039712.1 | NC_001335_p47 | ThyX-like | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 31607 | 32338 |
| NP_039680.1 | NC_001335_p13 | Scaffolding | phrog_233 | head scaffolding protein | head and packaging | 1 | 10797 | 11318 |
| NP_039695.1 | NC_001335_p29 | Minor tail protein | phrog_737 | minor tail protein | tail | 1 | 21890 | 23536 |
| NP_039750.1 | NC_001335_p87 | hypothetical protein | phrog_3207 | unknown function | unknown function | -1 | 49217 | 49483 |
| NP_039732.1 | NC_001335_p68 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42341 | 42580 |
| NP_039668.1 | NC_001335_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 411 | 1100 |
| NP_039741.1 | NC_001335_p78 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 46290 | 47048 |
| NP_039742.1 | NC_001335_p79 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 47051 | 47188 |
| NP_039740.1 | NC_001335_p77 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46015 | 46290 |
| NP_039696.1 | NC_001335_p30 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 23536 | 24198 |
| NP_039704.1 | NC_001335_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27656 | 27769 |
| NP_039720.1 | NC_001335_p56 | NrdH-like | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 37499 | 37810 |
| YP_009000609.1 | NC_001335_p42 | hypothetical protein | phrog_1545 | unknown function | unknown function | -1 | 28499 | 28678 |
| NP_039724.1 | NC_001335_p60 | hypothetical protein | phrog_1498 | unknown function | unknown function | -1 | 39379 | 39522 |
| NP_039676.1 | NC_001335_p9 | Lysin B | phrog_102 | endolysin | lysis | 1 | 5848 | 6612 |
| NP_039735.1 | NC_001335_p72 | Immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44331 | 44882 |
| NP_039743.1 | NC_001335_p80 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 47199 | 47417 |
| NP_039728.1 | NC_001335_p64 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 40369 | 40755 |
| NP_039726.1 | NC_001335_p62 | hypothetical protein | phrog_3369 | unknown function | unknown function | -1 | 39896 | 40051 |
| NP_039733.1 | NC_001335_p70 | RecB-like | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42970 | 43842 |
| NP_039719.1 | NC_001335_p55 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 37032 | 37502 |
| NP_039729.1 | NC_001335_p65 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40787 | 41593 |
| NP_039746.1 | NC_001335_p83 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 48137 | 48517 |
| NP_039707.1 | NC_001335_p41 | hypothetical protein | phrog_25458 | unknown function | unknown function | -1 | 28266 | 28499 |
| NP_039736.1 | NC_001335_p73 | hypothetical protein | phrog_2869 | unknown function | unknown function | -1 | 45180 | 45356 |
| NP_039708.1 | NC_001335_p43 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 28689 | 30476 |
| NP_039744.1 | NC_001335_p81 | hypothetical protein | phrog_2223 | unknown function | unknown function | -1 | 47470 | 47748 |
| NP_039684.1 | NC_001335_p18 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13127 | 13495 |
| NP_039700.1 | NC_001335_p34 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 26557 | 26727 |
| NP_039715.1 | NC_001335_p50 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 35042 | 35245 |
| NP_039752.1 | NC_001335_p89 | hypothetical protein | phrog_1392 | unknown function | unknown function | -1 | 49663 | 50382 |
| NP_039699.1 | NC_001335_p33 | hypothetical protein | phrog_2697 | unknown function | unknown function | -1 | 26329 | 26547 |
| NP_039673.1 | NC_001335_p6 | minor tail subunit | phrog_1260 | minor tail protein | tail | 1 | 3209 | 4150 |
| NP_039669.1 | NC_001335_p2 | hypothetical protein | phrog_8314 | unknown function | unknown function | 1 | 1305 | 2084 |
| NP_039694.1 | NC_001335_p28 | Minor tail protein | phrog_404 | minor tail protein | tail | 1 | 21588 | 21893 |
| NP_039747.1 | NC_001335_p84 | hypothetical protein | phrog_9458 | unknown function | unknown function | -1 | 48514 | 48732 |
| NP_039682.1 | NC_001335_p15 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 12382 | 12555 |
| YP_009000608.1 | NC_001335_p32 | hypothetical protein | phrog_733 | excisionase | integration and excision | 1 | 25777 | 26220 |
| NP_039693.1 | NC_001335_p27 | Minor tail subunit | phrog_352 | minor tail protein | tail | 1 | 21148 | 21591 |
| NP_039730.1 | NC_001335_p66 | Phosphoesterase | phrog_547 | phosphoesterase | other | -1 | 41580 | 42203 |
| NP_039717.1 | NC_001335_p52 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35411 | 36115 |
| NP_039697.1 | NC_001335_p31 | Integrase (Y-int) | phrog_1 | integrase | integration and excision | -1 | 24254 | 25369 |
| NP_039722.1 | NC_001335_p58 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38270 | 38662 |
| NP_039701.1 | NC_001335_p35 | hypothetical protein | phrog_229 | MazG-like pyrophosphatase | other | -1 | 26747 | 27091 |
| NP_039711.1 | NC_001335_p46 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 31386 | 31595 |
| NP_039686.1 | NC_001335_p20 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 13840 | 14259 |
| NP_039709.1 | NC_001335_p44 | hypothetical protein | phrog_4326 | unknown function | unknown function | -1 | 30486 | 30779 |
| NP_039748.1 | NC_001335_p85 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 48729 | 48929 |
| NP_039749.1 | NC_001335_p86 | hypothetical protein | phrog_20451 | unknown function | unknown function | -1 | 48937 | 49203 |
| NP_039692.1 | NC_001335_p26 | Minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19340 | 21130 |
| NP_039687.1 | NC_001335_p21 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 14277 | 14873 |
| NP_039745.1 | NC_001335_p82 | hypothetical protein | phrog_3256 | unknown function | unknown function | -1 | 47780 | 48115 |
| NP_039683.1 | NC_001335_p16 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12559 | 12936 |
| NP_039691.1 | NC_001335_p25 | Minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18333 | 19343 |
| NP_039725.1 | NC_001335_p61 | hypothetical protein | phrog_289 | GTP-binding domain | other | -1 | 39519 | 39896 |
| NP_039716.1 | NC_001335_p51 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35242 | 35427 |
| NP_039706.1 | NC_001335_p40 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 28048 | 28266 |
| NP_039702.1 | NC_001335_p36 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 27091 | 27243 |
| NP_039688.1 | NC_001335_p23 | Tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 14987 | 15385 |
| NP_039670.1 | NC_001335_p3 | hypothetical protein | phrog_8551 | unknown function | unknown function | 1 | 2084 | 2335 |
| YP_009000612.1 | NC_001335_p90 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 50786 | 51082 |
| NP_039727.1 | NC_001335_p63 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40048 | 40284 |
| NP_039751.1 | NC_001335_p88 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 49493 | 49654 |
| NP_039710.1 | NC_001335_p45 | HTH DNA binding | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30961 | 31389 |
| YP_009000606.1 | NC_001335_p17 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 12933 | 13127 |
| NP_039713.1 | NC_001335_p48 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 32457 | 32996 |
| NP_039677.1 | NC_001335_p10 | Terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6626 | 8407 |
| YP_009000610.1 | NC_001335_p53 | hypothetical protein | phrog_2436 | unknown function | unknown function | -1 | 36112 | 36264 |
| YP_009000611.1 | NC_001335_p69 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 42657 | 42962 |
| NP_039703.1 | NC_001335_p37 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 27240 | 27659 |
| NP_039681.1 | NC_001335_p14 | Major Capsid | phrog_10 | major head protein | head and packaging | 1 | 11351 | 12331 |
| NP_039714.1 | NC_001335_p49 | Ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 32993 | 35041 |
| NP_039705.1 | NC_001335_p39 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 27770 | 28021 |
| NP_039685.1 | NC_001335_p19 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13495 | 13830 |
| NP_039718.1 | NC_001335_p54 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 36268 | 37035 |
| NP_039723.1 | NC_001335_p59 | Endo VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 38794 | 39288 |
| NP_039672.1 | NC_001335_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2665 | 3132 |