Genomic map of Salmonella virus PRD1 (NC_001421)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_001421
Definition
Salmonella virus PRD1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Kalamavirales; Tectiviridae; Alphatectivirus.
DB of origin
REFSEQ
Length
14927
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
31
%GC
48.1
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_001542617.1 NC_001421_p29 hypothetical protein phrog_456 Rz-like spanin lysis 1 13616 13888
YP_001542610.1 NC_001421_p16 hypothetical protein phrog_16709 unknown function unknown function 1 9955 10038
NP_040690.1 NC_001421_p12 hypothetical protein phrog_15703 unknown function unknown function 1 8332 8460
NP_040692.1 NC_001421_p14 major capsid protein phrog_5863 minor head protein head and packaging 1 8595 9782
NP_040681.1 NC_001421_p1 hypothetical protein phrog_15886 unknown function unknown function 1 233 1012
NP_040696.1 NC_001421_p20 hypothetical protein phrog_8052 membrane DNA delivery moron, auxiliary metabolic gene and host takeover 1 10617 10823
NP_040695.1 NC_001421_p18 DNA delivery protein phrog_14462 unknown function unknown function 1 10168 10440
YP_001542615.1 NC_001421_p27 holin phrog_785 holin lysis 1 12984 13337
YP_001542613.1 NC_001421_p22 hypothetical protein phrog_18623 unknown function unknown function 1 11090 11200
YP_001542609.1 NC_001421_p10 assembly protein phrog_14814 unknown function unknown function 1 7029 7640
NP_040686.1 NC_001421_p6 spike phrog_15674 major spike protein head and packaging 1 5287 6309
NP_040683.1 NC_001421_p3 muramidase phrog_2860 endolysin head and packaging 1 2679 3128
YP_001542612.1 NC_001421_p19 DNA delivery protein phrog_8052 membrane DNA delivery moron, auxiliary metabolic gene and host takeover 1 10440 10604
YP_001542611.1 NC_001421_p17 hypothetical protein phrog_16332 unknown function unknown function 1 10044 10166
NP_040687.1 NC_001421_p7 assembly protein phrog_15795 unknown function unknown function 1 6328 6588
NP_040702.1 NC_001421_p31 ssDNA binding protein phrog_14847 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 14205 14687
NP_040684.1 NC_001421_p4 receptor binding phrog_16118 unknown function unknown function 1 3128 4903
NP_040694.1 NC_001421_p15 DNA packaging protein phrog_15626 unknown function unknown function 1 9801 9944
NP_040682.1 NC_001421_p2 DNA polymerase phrog_1907 DNA polymerase DNA, RNA and nucleotide metabolism 1 1016 2677
NP_040691.1 NC_001421_p13 DNA packaging protein phrog_16195 unknown function unknown function 1 8460 8588
NP_040688.1 NC_001421_p9 minor capsid protein phrog_15059 minor head protein head and packaging 1 6784 7284
NP_040689.1 NC_001421_p11 DNA packaging ATPase phrog_2666 terminase large subunit head and packaging 1 7637 8320
YP_001542608.1 NC_001421_p8 assembly protein phrog_14809 unknown function unknown function 1 6578 6784
NP_040685.1 NC_001421_p5 penton phrog_15879 unknown function unknown function 1 4907 5287
NP_040699.1 NC_001421_p24 hypothetical protein phrog_15637 unknown function unknown function 1 11836 12189
NP_040698.2 NC_001421_p23 DNA delivery protein phrog_16567 unknown function unknown function 1 11202 11825
YP_001542614.1 NC_001421_p26 DNA delivery phrog_15454 unknown function unknown function 1 12535 12987
NP_040701.1 NC_001421_p30 ssDNA binding protein phrog_15890 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 13848 14132
YP_001542616.1 NC_001421_p28 hypothetical protein phrog_89 Rz-like spanin lysis 1 13330 13692
NP_040700.1 NC_001421_p25 transglycosylase phrog_13449 transglycosylase other 1 12190 12987
NP_040697.1 NC_001421_p21 minor capsid protein phrog_15441 minor head protein head and packaging 1 10833 11087