| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_001421 |
Definition |
Salmonella virus PRD1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Kalamavirales; Tectiviridae; Alphatectivirus. |
DB of origin |
REFSEQ |
Length |
14927 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
31 |
%GC |
48.1 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001542617.1 | NC_001421_p29 | hypothetical protein | phrog_456 | Rz-like spanin | lysis | 1 | 13616 | 13888 |
| YP_001542610.1 | NC_001421_p16 | hypothetical protein | phrog_16709 | unknown function | unknown function | 1 | 9955 | 10038 |
| NP_040690.1 | NC_001421_p12 | hypothetical protein | phrog_15703 | unknown function | unknown function | 1 | 8332 | 8460 |
| NP_040692.1 | NC_001421_p14 | major capsid protein | phrog_5863 | minor head protein | head and packaging | 1 | 8595 | 9782 |
| NP_040681.1 | NC_001421_p1 | hypothetical protein | phrog_15886 | unknown function | unknown function | 1 | 233 | 1012 |
| NP_040696.1 | NC_001421_p20 | hypothetical protein | phrog_8052 | membrane DNA delivery | moron, auxiliary metabolic gene and host takeover | 1 | 10617 | 10823 |
| NP_040695.1 | NC_001421_p18 | DNA delivery protein | phrog_14462 | unknown function | unknown function | 1 | 10168 | 10440 |
| YP_001542615.1 | NC_001421_p27 | holin | phrog_785 | holin | lysis | 1 | 12984 | 13337 |
| YP_001542613.1 | NC_001421_p22 | hypothetical protein | phrog_18623 | unknown function | unknown function | 1 | 11090 | 11200 |
| YP_001542609.1 | NC_001421_p10 | assembly protein | phrog_14814 | unknown function | unknown function | 1 | 7029 | 7640 |
| NP_040686.1 | NC_001421_p6 | spike | phrog_15674 | major spike protein | head and packaging | 1 | 5287 | 6309 |
| NP_040683.1 | NC_001421_p3 | muramidase | phrog_2860 | endolysin | head and packaging | 1 | 2679 | 3128 |
| YP_001542612.1 | NC_001421_p19 | DNA delivery protein | phrog_8052 | membrane DNA delivery | moron, auxiliary metabolic gene and host takeover | 1 | 10440 | 10604 |
| YP_001542611.1 | NC_001421_p17 | hypothetical protein | phrog_16332 | unknown function | unknown function | 1 | 10044 | 10166 |
| NP_040687.1 | NC_001421_p7 | assembly protein | phrog_15795 | unknown function | unknown function | 1 | 6328 | 6588 |
| NP_040702.1 | NC_001421_p31 | ssDNA binding protein | phrog_14847 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 14205 | 14687 |
| NP_040684.1 | NC_001421_p4 | receptor binding | phrog_16118 | unknown function | unknown function | 1 | 3128 | 4903 |
| NP_040694.1 | NC_001421_p15 | DNA packaging protein | phrog_15626 | unknown function | unknown function | 1 | 9801 | 9944 |
| NP_040682.1 | NC_001421_p2 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 1016 | 2677 |
| NP_040691.1 | NC_001421_p13 | DNA packaging protein | phrog_16195 | unknown function | unknown function | 1 | 8460 | 8588 |
| NP_040688.1 | NC_001421_p9 | minor capsid protein | phrog_15059 | minor head protein | head and packaging | 1 | 6784 | 7284 |
| NP_040689.1 | NC_001421_p11 | DNA packaging ATPase | phrog_2666 | terminase large subunit | head and packaging | 1 | 7637 | 8320 |
| YP_001542608.1 | NC_001421_p8 | assembly protein | phrog_14809 | unknown function | unknown function | 1 | 6578 | 6784 |
| NP_040685.1 | NC_001421_p5 | penton | phrog_15879 | unknown function | unknown function | 1 | 4907 | 5287 |
| NP_040699.1 | NC_001421_p24 | hypothetical protein | phrog_15637 | unknown function | unknown function | 1 | 11836 | 12189 |
| NP_040698.2 | NC_001421_p23 | DNA delivery protein | phrog_16567 | unknown function | unknown function | 1 | 11202 | 11825 |
| YP_001542614.1 | NC_001421_p26 | DNA delivery | phrog_15454 | unknown function | unknown function | 1 | 12535 | 12987 |
| NP_040701.1 | NC_001421_p30 | ssDNA binding protein | phrog_15890 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 13848 | 14132 |
| YP_001542616.1 | NC_001421_p28 | hypothetical protein | phrog_89 | Rz-like spanin | lysis | 1 | 13330 | 13692 |
| NP_040700.1 | NC_001421_p25 | transglycosylase | phrog_13449 | transglycosylase | other | 1 | 12190 | 12987 |
| NP_040697.1 | NC_001421_p21 | minor capsid protein | phrog_15441 | minor head protein | head and packaging | 1 | 10833 | 11087 |