Genomic map of Lactococcus virus c2 (NC_001706)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_001706
Definition
Lactococcus phage c2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Ceduovirus.
DB of origin
REFSEQ
Length
22172
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
39
%GC
36.3
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_043528.1 NC_001706_p2 hypothetical protein phrog_10769 unknown function unknown function -1 426 800
NP_043529.1 NC_001706_p3 hypothetical protein phrog_10148 unknown function unknown function -1 823 1125
NP_043548.1 NC_001706_p22 hypothetical protein phrog_11709 unknown function unknown function -1 6494 6634
NP_043559.1 NC_001706_p33 hypothetical protein phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 15246 15533
NP_043541.1 NC_001706_p15 hypothetical protein phrog_10596 unknown function unknown function -1 4265 4654
NP_043556.1 NC_001706_p30 hypothetical protein phrog_10561 unknown function unknown function 1 12290 12544
NP_043557.1 NC_001706_p31 hypothetical protein phrog_10523 unknown function unknown function 1 12732 13136
NP_043543.1 NC_001706_p17 DNA polymerase subunit phrog_21006 DNA polymerase DNA, RNA and nucleotide metabolism -1 5024 5218
NP_043539.1 NC_001706_p13 hypothetical protein singleton unknown function unknown function -1 3969 4037
NP_043536.1 NC_001706_p10 hypothetical protein phrog_1632 unknown function unknown function -1 3211 3462
NP_043562.1 NC_001706_p36 hypothetical protein phrog_10648 unknown function unknown function 1 17398 19314
NP_043545.1 NC_001706_p19 hypothetical protein phrog_10138 unknown function unknown function -1 6189 6389
NP_043560.1 NC_001706_p34 terminase phrog_9 terminase large subunit head and packaging 1 15546 17102
NP_043535.1 NC_001706_p9 hypothetical protein phrog_10559 unknown function unknown function -1 3065 3217
NP_043549.1 NC_001706_p23 hypothetical protein phrog_10074 unknown function unknown function 1 7246 7395
NP_043564.1 NC_001706_p38 minor structural protein phrog_10326 virion structural protein head and packaging 1 20449 21696
NP_043547.1 NC_001706_p21 hypothetical protein singleton unknown function unknown function -1 6438 6551
NP_043532.1 NC_001706_p6 hypothetical protein phrog_1295 unknown function unknown function -1 1939 2103
NP_043554.1 NC_001706_p28 hypothetical protein phrog_10227 unknown function unknown function 1 10880 11596
NP_043551.1 NC_001706_p25 lysin phrog_7 endolysin lysis 1 7937 8617
NP_043565.1 NC_001706_p39 holin phrog_9407 holin lysis 1 21719 22009
NP_043552.1 NC_001706_p26 minor structural protein phrog_10159 virion structural protein head and packaging 1 8628 9467
NP_043530.1 NC_001706_p4 hypothetical protein phrog_10525 unknown function unknown function -1 1118 1441
NP_043555.1 NC_001706_p29 major tail shaft protein phrog_2634 major tail protein tail 1 11603 12220
NP_043544.1 NC_001706_p18 hypothetical protein phrog_1284 unknown function unknown function -1 5288 6187
NP_043531.1 NC_001706_p5 hypothetical protein phrog_1317 unknown function unknown function -1 1442 1942
NP_043558.1 NC_001706_p32 tail adsorption protein phrog_9145 tail length tape measure protein tail 1 13129 15249
NP_043550.1 NC_001706_p24 holin phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 7406 7891
NP_043563.1 NC_001706_p37 minor structural protein phrog_10067 virion structural protein head and packaging 1 19311 20456
NP_043538.1 NC_001706_p12 hypothetical protein phrog_1225 unknown function unknown function -1 3594 3962
NP_043537.1 NC_001706_p11 transcription regulator phrog_10808 transcriptional regulator transcription regulation -1 3434 3616
NP_043542.1 NC_001706_p16 DNA polymerase subunit phrog_10577 DNA polymerase DNA, RNA and nucleotide metabolism -1 4654 5034
NP_043527.1 NC_001706_p1 transcription regulator phrog_12561 transcriptional regulator transcription regulation -1 253 423
NP_043546.1 NC_001706_p20 hypothetical protein singleton unknown function unknown function -1 6386 6493
NP_043540.1 NC_001706_p14 hypothetical protein phrog_9988 unknown function unknown function -1 4034 4207
NP_043561.1 NC_001706_p35 hypothetical protein phrog_10033 unknown function unknown function 1 17102 17401
NP_043533.1 NC_001706_p7 hypothetical protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 2116 2460
NP_043553.1 NC_001706_p27 major capsid (head) protein phrog_3270 head maturation protease head and packaging 1 9418 10860
NP_043534.1 NC_001706_p8 recombination protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 2526 3065