| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_001706 |
Definition |
Lactococcus phage c2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Ceduovirus. |
DB of origin |
REFSEQ |
Length |
22172 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
39 |
%GC |
36.3 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_043528.1 | NC_001706_p2 | hypothetical protein | phrog_10769 | unknown function | unknown function | -1 | 426 | 800 |
| NP_043529.1 | NC_001706_p3 | hypothetical protein | phrog_10148 | unknown function | unknown function | -1 | 823 | 1125 |
| NP_043548.1 | NC_001706_p22 | hypothetical protein | phrog_11709 | unknown function | unknown function | -1 | 6494 | 6634 |
| NP_043559.1 | NC_001706_p33 | hypothetical protein | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 15246 | 15533 |
| NP_043541.1 | NC_001706_p15 | hypothetical protein | phrog_10596 | unknown function | unknown function | -1 | 4265 | 4654 |
| NP_043556.1 | NC_001706_p30 | hypothetical protein | phrog_10561 | unknown function | unknown function | 1 | 12290 | 12544 |
| NP_043557.1 | NC_001706_p31 | hypothetical protein | phrog_10523 | unknown function | unknown function | 1 | 12732 | 13136 |
| NP_043543.1 | NC_001706_p17 | DNA polymerase subunit | phrog_21006 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 5024 | 5218 |
| NP_043539.1 | NC_001706_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3969 | 4037 |
| NP_043536.1 | NC_001706_p10 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 3211 | 3462 |
| NP_043562.1 | NC_001706_p36 | hypothetical protein | phrog_10648 | unknown function | unknown function | 1 | 17398 | 19314 |
| NP_043545.1 | NC_001706_p19 | hypothetical protein | phrog_10138 | unknown function | unknown function | -1 | 6189 | 6389 |
| NP_043560.1 | NC_001706_p34 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 15546 | 17102 |
| NP_043535.1 | NC_001706_p9 | hypothetical protein | phrog_10559 | unknown function | unknown function | -1 | 3065 | 3217 |
| NP_043549.1 | NC_001706_p23 | hypothetical protein | phrog_10074 | unknown function | unknown function | 1 | 7246 | 7395 |
| NP_043564.1 | NC_001706_p38 | minor structural protein | phrog_10326 | virion structural protein | head and packaging | 1 | 20449 | 21696 |
| NP_043547.1 | NC_001706_p21 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6438 | 6551 |
| NP_043532.1 | NC_001706_p6 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 1939 | 2103 |
| NP_043554.1 | NC_001706_p28 | hypothetical protein | phrog_10227 | unknown function | unknown function | 1 | 10880 | 11596 |
| NP_043551.1 | NC_001706_p25 | lysin | phrog_7 | endolysin | lysis | 1 | 7937 | 8617 |
| NP_043565.1 | NC_001706_p39 | holin | phrog_9407 | holin | lysis | 1 | 21719 | 22009 |
| NP_043552.1 | NC_001706_p26 | minor structural protein | phrog_10159 | virion structural protein | head and packaging | 1 | 8628 | 9467 |
| NP_043530.1 | NC_001706_p4 | hypothetical protein | phrog_10525 | unknown function | unknown function | -1 | 1118 | 1441 |
| NP_043555.1 | NC_001706_p29 | major tail shaft protein | phrog_2634 | major tail protein | tail | 1 | 11603 | 12220 |
| NP_043544.1 | NC_001706_p18 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 5288 | 6187 |
| NP_043531.1 | NC_001706_p5 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 1442 | 1942 |
| NP_043558.1 | NC_001706_p32 | tail adsorption protein | phrog_9145 | tail length tape measure protein | tail | 1 | 13129 | 15249 |
| NP_043550.1 | NC_001706_p24 | holin | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 7406 | 7891 |
| NP_043563.1 | NC_001706_p37 | minor structural protein | phrog_10067 | virion structural protein | head and packaging | 1 | 19311 | 20456 |
| NP_043538.1 | NC_001706_p12 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 3594 | 3962 |
| NP_043537.1 | NC_001706_p11 | transcription regulator | phrog_10808 | transcriptional regulator | transcription regulation | -1 | 3434 | 3616 |
| NP_043542.1 | NC_001706_p16 | DNA polymerase subunit | phrog_10577 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 4654 | 5034 |
| NP_043527.1 | NC_001706_p1 | transcription regulator | phrog_12561 | transcriptional regulator | transcription regulation | -1 | 253 | 423 |
| NP_043546.1 | NC_001706_p20 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6386 | 6493 |
| NP_043540.1 | NC_001706_p14 | hypothetical protein | phrog_9988 | unknown function | unknown function | -1 | 4034 | 4207 |
| NP_043561.1 | NC_001706_p35 | hypothetical protein | phrog_10033 | unknown function | unknown function | 1 | 17102 | 17401 |
| NP_043533.1 | NC_001706_p7 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 2116 | 2460 |
| NP_043553.1 | NC_001706_p27 | major capsid (head) protein | phrog_3270 | head maturation protease | head and packaging | 1 | 9418 | 10860 |
| NP_043534.1 | NC_001706_p8 | recombination protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 2526 | 3065 |