Genomic map of Streptococcus phage Cp-1 (NC_001825)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_001825
Definition
Streptococcus phage Cp-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Picovirinae; Cepunavirus.
DB of origin
REFSEQ
Length
19343
Host Name
Streptococcus pneumoniae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
25
%GC
38.83
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_044828.1 NC_001825_p15 hypothetical protein phrog_17155 unknown function unknown function 1 10012 10878
NP_044815.1 NC_001825_p3 hypothetical protein singleton unknown function unknown function 1 1152 1346
NP_044838.1 NC_001825_p23 hypothetical protein phrog_1027 unknown function unknown function -1 17895 18137
NP_044830.1 NC_001825_p16 hypothetical protein phrog_15030 unknown function unknown function 1 10787 11548
NP_044839.1 NC_001825_p24 hypothetical protein phrog_27339 unknown function unknown function -1 18419 18688
NP_044817.1 NC_001825_p5 DNA polymerase phrog_1907 DNA polymerase DNA, RNA and nucleotide metabolism 1 2040 3746
NP_044816.1 NC_001825_p4 terminal protein phrog_26145 unknown function unknown function 1 1351 2043
NP_044836.1 NC_001825_p21 holin protein phrog_199 holin lysis 1 16025 16429
NP_044814.1 NC_001825_p2 hypothetical protein phrog_24156 unknown function unknown function 1 657 947
NP_044837.1 NC_001825_p22 lysozyme phrog_6745 endolysin lysis 1 16429 17448
NP_044821.1 NC_001825_p9 major head protein phrog_2006 major head protein head and packaging 1 5410 6507
NP_044824.1 NC_001825_p11 lower collar protein phrog_26520 lower collar tail 1 7627 8211
NP_044835.1 NC_001825_p20 DNA encapsidation protein phrog_2150 terminase head and packaging 1 14953 16035
NP_044832.1 NC_001825_p18 hypothetical protein singleton unknown function unknown function 1 12318 13031
NP_044840.1 NC_001825_p25 hypothetical protein singleton unknown function unknown function -1 18781 18969
NP_044818.1 NC_001825_p6 hypothetical protein phrog_26305 unknown function unknown function 1 3703 4149
NP_044819.1 NC_001825_p7 hypothetical protein phrog_22891 unknown function unknown function 1 4142 4654
NP_044826.1 NC_001825_p13 hypothetical protein phrog_23584 unknown function unknown function 1 8805 9119
NP_044827.1 NC_001825_p14 hypothetical protein phrog_35592 unknown function unknown function 1 9103 9990
NP_044823.1 NC_001825_p10 upper collar protein phrog_2038 upper collar connector connector 1 6564 7577
NP_044813.1 NC_001825_p1 hypothetical protein phrog_22499 unknown function unknown function 1 376 642
NP_044833.1 NC_001825_p19 tail protein phrog_2248 tail protein tail 1 13155 14915
NP_044825.1 NC_001825_p12 hypothetical protein phrog_27791 unknown function unknown function 1 8224 8808
NP_044831.1 NC_001825_p17 tail protein singleton unknown function unknown function 1 11587 12279
NP_044820.1 NC_001825_p8 possible scaffolding protein phrog_25389 unknown function unknown function 1 4876 5166