| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_001825 |
Definition |
Streptococcus phage Cp-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Picovirinae; Cepunavirus. |
DB of origin |
REFSEQ |
Length |
19343 |
Host Name |
Streptococcus pneumoniae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
25 |
%GC |
38.83 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_044828.1 | NC_001825_p15 | hypothetical protein | phrog_17155 | unknown function | unknown function | 1 | 10012 | 10878 |
| NP_044815.1 | NC_001825_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1152 | 1346 |
| NP_044838.1 | NC_001825_p23 | hypothetical protein | phrog_1027 | unknown function | unknown function | -1 | 17895 | 18137 |
| NP_044830.1 | NC_001825_p16 | hypothetical protein | phrog_15030 | unknown function | unknown function | 1 | 10787 | 11548 |
| NP_044839.1 | NC_001825_p24 | hypothetical protein | phrog_27339 | unknown function | unknown function | -1 | 18419 | 18688 |
| NP_044817.1 | NC_001825_p5 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 2040 | 3746 |
| NP_044816.1 | NC_001825_p4 | terminal protein | phrog_26145 | unknown function | unknown function | 1 | 1351 | 2043 |
| NP_044836.1 | NC_001825_p21 | holin protein | phrog_199 | holin | lysis | 1 | 16025 | 16429 |
| NP_044814.1 | NC_001825_p2 | hypothetical protein | phrog_24156 | unknown function | unknown function | 1 | 657 | 947 |
| NP_044837.1 | NC_001825_p22 | lysozyme | phrog_6745 | endolysin | lysis | 1 | 16429 | 17448 |
| NP_044821.1 | NC_001825_p9 | major head protein | phrog_2006 | major head protein | head and packaging | 1 | 5410 | 6507 |
| NP_044824.1 | NC_001825_p11 | lower collar protein | phrog_26520 | lower collar | tail | 1 | 7627 | 8211 |
| NP_044835.1 | NC_001825_p20 | DNA encapsidation protein | phrog_2150 | terminase | head and packaging | 1 | 14953 | 16035 |
| NP_044832.1 | NC_001825_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12318 | 13031 |
| NP_044840.1 | NC_001825_p25 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18781 | 18969 |
| NP_044818.1 | NC_001825_p6 | hypothetical protein | phrog_26305 | unknown function | unknown function | 1 | 3703 | 4149 |
| NP_044819.1 | NC_001825_p7 | hypothetical protein | phrog_22891 | unknown function | unknown function | 1 | 4142 | 4654 |
| NP_044826.1 | NC_001825_p13 | hypothetical protein | phrog_23584 | unknown function | unknown function | 1 | 8805 | 9119 |
| NP_044827.1 | NC_001825_p14 | hypothetical protein | phrog_35592 | unknown function | unknown function | 1 | 9103 | 9990 |
| NP_044823.1 | NC_001825_p10 | upper collar protein | phrog_2038 | upper collar connector | connector | 1 | 6564 | 7577 |
| NP_044813.1 | NC_001825_p1 | hypothetical protein | phrog_22499 | unknown function | unknown function | 1 | 376 | 642 |
| NP_044833.1 | NC_001825_p19 | tail protein | phrog_2248 | tail protein | tail | 1 | 13155 | 14915 |
| NP_044825.1 | NC_001825_p12 | hypothetical protein | phrog_27791 | unknown function | unknown function | 1 | 8224 | 8808 |
| NP_044831.1 | NC_001825_p17 | tail protein | singleton | unknown function | unknown function | 1 | 11587 | 12279 |
| NP_044820.1 | NC_001825_p8 | possible scaffolding protein | phrog_25389 | unknown function | unknown function | 1 | 4876 | 5166 |