Genomic map of Lactococcus virus sk1 (NC_001835)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_001835
Definition
Lactococcus phage sk1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus.
DB of origin
REFSEQ
Length
28451
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
34.51
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_044974.1 NC_001835_p29 hypothetical protein phrog_3002 unknown function unknown function -1 18042 18227
NP_044981.1 NC_001835_p37 hypothetical protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 20507 21142
NP_597856.1 NC_001835_p21 hypothetical protein phrog_3775 transglycosylase other -1 15994 16185
NP_044962.1 NC_001835_p16 hypothetical protein phrog_1432 tail associated lysin tail 1 12477 13604
NP_044978.1 NC_001835_p34 hypothetical protein phrog_1317 unknown function unknown function -1 19406 19915
NP_044977.1 NC_001835_p33 hypothetical protein phrog_1919 unknown function unknown function -1 19005 19322
NP_044976.1 NC_001835_p31 hypothetical protein phrog_1825 DNA methyltransferase other -1 18617 18859
NP_044994.1 NC_001835_p50 hypothetical protein phrog_24018 unknown function unknown function -1 25836 26015
NP_044961.1 NC_001835_p15 hypothetical protein phrog_1424 tail protein tail 1 11581 12477
NP_045000.1 NC_001835_p56 hypothetical protein phrog_1652 unknown function unknown function 1 27213 27380
NP_044984.1 NC_001835_p40 hypothetical protein phrog_1449 unknown function unknown function -1 21735 22136
NP_044996.1 NC_001835_p52 hypothetical protein phrog_1656 unknown function unknown function -1 26154 26342
NP_044972.1 NC_001835_p27 hypothetical protein phrog_1225 unknown function unknown function -1 17540 17926
NP_044953.1 NC_001835_p7 hypothetical protein phrog_1428 head-tail connector protein connector 1 5545 5808
NP_044988.1 NC_001835_p44 hypothetical protein phrog_3604 unknown function unknown function -1 22908 23090
NP_597857.1 NC_001835_p32 hypothetical protein phrog_4546 unknown function unknown function -1 18860 18970
NP_044987.1 NC_001835_p43 hypothetical protein phrog_1405 unknown function unknown function -1 22679 22945
NP_044973.1 NC_001835_p28 hypothetical protein phrog_1508 unknown function unknown function -1 17926 18045
NP_044958.1 NC_001835_p12 hypothetical protein phrog_1420 virion structural protein head and packaging 1 7775 8050
NP_044985.1 NC_001835_p41 hypothetical protein phrog_1632 unknown function unknown function -1 21952 22239
NP_044992.1 NC_001835_p48 hypothetical protein phrog_4505 unknown function unknown function -1 24358 24561
NP_044999.1 NC_001835_p55 hypothetical protein phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 26734 27216
NP_044950.1 NC_001835_p4 hypothetical protein phrog_12 portal protein head and packaging 1 2697 3833
NP_044964.1 NC_001835_p18 hypothetical protein phrog_1630 receptor binding tail protein tail 1 13877 14671
NP_044991.1 NC_001835_p47 hypothetical protein phrog_33906 unknown function unknown function -1 24025 24297
NP_044969.1 NC_001835_p24 hypothetical protein phrog_1415 unknown function unknown function -1 16685 17032
NP_044959.1 NC_001835_p13 hypothetical protein phrog_1421 virion structural protein head and packaging 1 8070 8582
NP_044986.1 NC_001835_p42 hypothetical protein phrog_2228 unknown function unknown function -1 22236 22622
NP_044998.1 NC_001835_p54 hypothetical protein phrog_1436 unknown function unknown function 1 26606 26737
NP_044956.1 NC_001835_p10 hypothetical protein phrog_1440 virion structural protein head and packaging 1 6441 6806
NP_044960.1 NC_001835_p14 hypothetical protein phrog_58 tail length tape measure protein tail 1 8582 11581
NP_044968.1 NC_001835_p23 hypothetical protein phrog_3389 unknown function unknown function -1 16509 16688
NP_044975.1 NC_001835_p30 hypothetical protein phrog_1083 unknown function unknown function -1 18238 18561
NP_044995.1 NC_001835_p51 hypothetical protein phrog_37398 unknown function unknown function -1 26020 26154
NP_044955.1 NC_001835_p9 hypothetical protein singleton unknown function unknown function 1 6112 6282
NP_044949.1 NC_001835_p3 hypothetical protein phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2400 2684
NP_044990.1 NC_001835_p46 DNA polymerase subunit singleton unknown function unknown function -1 23892 24032
NP_044983.1 NC_001835_p39 hypothetical protein phrog_6484 unknown function unknown function -1 21508 21738
NP_044966.1 NC_001835_p20 lysin phrog_670 endolysin lysis 1 15043 15783
NP_044947.1 NC_001835_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 263 787
NP_044957.1 NC_001835_p11 major structural protein phrog_1433 major tail protein tail 1 6819 7724
NP_044982.1 NC_001835_p38 hypothetical protein phrog_5462 unknown function unknown function -1 21139 21450
NP_044993.1 NC_001835_p49 hypothetical protein phrog_7915 unknown function unknown function -1 24706 25398
NP_044979.1 NC_001835_p35 hypothetical protein phrog_1295 unknown function unknown function -1 19912 20127
NP_044971.1 NC_001835_p26 hypothetical protein phrog_1509 unknown function unknown function -1 17219 17476
NP_044965.1 NC_001835_p19 holin phrog_1379 unknown function unknown function 1 14693 15046
NP_044951.1 NC_001835_p5 hypothetical protein phrog_80 head maturation protease head and packaging 1 3814 4350
NP_044948.1 NC_001835_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 788 2410
NP_044963.1 NC_001835_p17 hypothetical protein phrog_1434 unknown function unknown function 1 13594 13887
NP_044954.1 NC_001835_p8 hypothetical protein phrog_1429 virion structural protein head and packaging 1 5808 6122
NP_044989.1 NC_001835_p45 DNA polymerase subunit phrog_1284 unknown function unknown function -1 23083 23895
NP_044970.1 NC_001835_p25 hypothetical protein phrog_1441 unknown function unknown function -1 17032 17268
NP_044967.1 NC_001835_p22 hypothetical protein phrog_1430 unknown function unknown function -1 16246 16512
NP_044980.1 NC_001835_p36 hypothetical protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 20143 20502
NP_044997.1 NC_001835_p53 hypothetical protein phrog_1952 unknown function unknown function 1 26473 26601
NP_044952.1 NC_001835_p6 hypothetical protein phrog_1393 minor head protein head and packaging 1 4343 5524