| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_001835 |
Definition |
Lactococcus phage sk1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus. |
DB of origin |
REFSEQ |
Length |
28451 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
34.51 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_044974.1 | NC_001835_p29 | hypothetical protein | phrog_3002 | unknown function | unknown function | -1 | 18042 | 18227 |
| NP_044981.1 | NC_001835_p37 | hypothetical protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 20507 | 21142 |
| NP_597856.1 | NC_001835_p21 | hypothetical protein | phrog_3775 | transglycosylase | other | -1 | 15994 | 16185 |
| NP_044962.1 | NC_001835_p16 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 12477 | 13604 |
| NP_044978.1 | NC_001835_p34 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 19406 | 19915 |
| NP_044977.1 | NC_001835_p33 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 19005 | 19322 |
| NP_044976.1 | NC_001835_p31 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 18617 | 18859 |
| NP_044994.1 | NC_001835_p50 | hypothetical protein | phrog_24018 | unknown function | unknown function | -1 | 25836 | 26015 |
| NP_044961.1 | NC_001835_p15 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 11581 | 12477 |
| NP_045000.1 | NC_001835_p56 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 27213 | 27380 |
| NP_044984.1 | NC_001835_p40 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 21735 | 22136 |
| NP_044996.1 | NC_001835_p52 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 26154 | 26342 |
| NP_044972.1 | NC_001835_p27 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 17540 | 17926 |
| NP_044953.1 | NC_001835_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5545 | 5808 |
| NP_044988.1 | NC_001835_p44 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 22908 | 23090 |
| NP_597857.1 | NC_001835_p32 | hypothetical protein | phrog_4546 | unknown function | unknown function | -1 | 18860 | 18970 |
| NP_044987.1 | NC_001835_p43 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 22679 | 22945 |
| NP_044973.1 | NC_001835_p28 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 17926 | 18045 |
| NP_044958.1 | NC_001835_p12 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 7775 | 8050 |
| NP_044985.1 | NC_001835_p41 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 21952 | 22239 |
| NP_044992.1 | NC_001835_p48 | hypothetical protein | phrog_4505 | unknown function | unknown function | -1 | 24358 | 24561 |
| NP_044999.1 | NC_001835_p55 | hypothetical protein | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 26734 | 27216 |
| NP_044950.1 | NC_001835_p4 | hypothetical protein | phrog_12 | portal protein | head and packaging | 1 | 2697 | 3833 |
| NP_044964.1 | NC_001835_p18 | hypothetical protein | phrog_1630 | receptor binding tail protein | tail | 1 | 13877 | 14671 |
| NP_044991.1 | NC_001835_p47 | hypothetical protein | phrog_33906 | unknown function | unknown function | -1 | 24025 | 24297 |
| NP_044969.1 | NC_001835_p24 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 16685 | 17032 |
| NP_044959.1 | NC_001835_p13 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 8070 | 8582 |
| NP_044986.1 | NC_001835_p42 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 22236 | 22622 |
| NP_044998.1 | NC_001835_p54 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 26606 | 26737 |
| NP_044956.1 | NC_001835_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6441 | 6806 |
| NP_044960.1 | NC_001835_p14 | hypothetical protein | phrog_58 | tail length tape measure protein | tail | 1 | 8582 | 11581 |
| NP_044968.1 | NC_001835_p23 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 16509 | 16688 |
| NP_044975.1 | NC_001835_p30 | hypothetical protein | phrog_1083 | unknown function | unknown function | -1 | 18238 | 18561 |
| NP_044995.1 | NC_001835_p51 | hypothetical protein | phrog_37398 | unknown function | unknown function | -1 | 26020 | 26154 |
| NP_044955.1 | NC_001835_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6112 | 6282 |
| NP_044949.1 | NC_001835_p3 | hypothetical protein | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2400 | 2684 |
| NP_044990.1 | NC_001835_p46 | DNA polymerase subunit | singleton | unknown function | unknown function | -1 | 23892 | 24032 |
| NP_044983.1 | NC_001835_p39 | hypothetical protein | phrog_6484 | unknown function | unknown function | -1 | 21508 | 21738 |
| NP_044966.1 | NC_001835_p20 | lysin | phrog_670 | endolysin | lysis | 1 | 15043 | 15783 |
| NP_044947.1 | NC_001835_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 263 | 787 |
| NP_044957.1 | NC_001835_p11 | major structural protein | phrog_1433 | major tail protein | tail | 1 | 6819 | 7724 |
| NP_044982.1 | NC_001835_p38 | hypothetical protein | phrog_5462 | unknown function | unknown function | -1 | 21139 | 21450 |
| NP_044993.1 | NC_001835_p49 | hypothetical protein | phrog_7915 | unknown function | unknown function | -1 | 24706 | 25398 |
| NP_044979.1 | NC_001835_p35 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 19912 | 20127 |
| NP_044971.1 | NC_001835_p26 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 17219 | 17476 |
| NP_044965.1 | NC_001835_p19 | holin | phrog_1379 | unknown function | unknown function | 1 | 14693 | 15046 |
| NP_044951.1 | NC_001835_p5 | hypothetical protein | phrog_80 | head maturation protease | head and packaging | 1 | 3814 | 4350 |
| NP_044948.1 | NC_001835_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 788 | 2410 |
| NP_044963.1 | NC_001835_p17 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 13594 | 13887 |
| NP_044954.1 | NC_001835_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5808 | 6122 |
| NP_044989.1 | NC_001835_p45 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 23083 | 23895 |
| NP_044970.1 | NC_001835_p25 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 17032 | 17268 |
| NP_044967.1 | NC_001835_p22 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 16246 | 16512 |
| NP_044980.1 | NC_001835_p36 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 20143 | 20502 |
| NP_044997.1 | NC_001835_p53 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 26473 | 26601 |
| NP_044952.1 | NC_001835_p6 | hypothetical protein | phrog_1393 | minor head protein | head and packaging | 1 | 4343 | 5524 |