Genomic map of Mycobacterium virus D29 (NC_001900)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_001900
Definition
Mycobacterium phage D29, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus.
DB of origin
REFSEQ
Length
49136
Host Name
Mycobacterium tuberculosis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
79
%GC
63.52
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_597858.1 NC_001900_p45 hypothetical protein singleton unknown function unknown function -1 31987 32073
NP_597859.1 NC_001900_p72 hypothetical protein singleton unknown function unknown function -1 45342 45611
NP_046819.1 NC_001900_p1 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 401 1213
NP_046822.1 NC_001900_p4 hypothetical protein phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2354 2650
NP_046826.1 NC_001900_p8 hypothetical protein phrog_526 holin lysis 1 6184 6609
NP_046871.1 NC_001900_p54 hypothetical protein phrog_1167 phosphofructokinase other -1 37554 38009
NP_046869.1 NC_001900_p52 hypothetical protein phrog_2436 unknown function unknown function -1 36638 36790
NP_046885.1 NC_001900_p68 hypothetical protein phrog_520 unknown function unknown function -1 43497 43730
NP_046845.1 NC_001900_p27 hypothetical protein phrog_352 minor tail protein tail 1 21865 22308
NP_046831.1 NC_001900_p13 hypothetical protein phrog_233 head scaffolding protein head and packaging 1 11498 12055
NP_046841.1 NC_001900_p23 hypothetical protein phrog_3656 tail assembly chaperone tail 1 16222 16527
NP_046844.1 NC_001900_p26 hypothetical protein phrog_110 minor tail protein tail 1 20058 21848
NP_046838.1 NC_001900_p20 hypothetical protein phrog_123 tail terminator connector 1 14559 14978
NP_046837.1 NC_001900_p19 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 14214 14549
NP_046882.1 NC_001900_p65 hypothetical protein phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41891 42589
NP_046874.1 NC_001900_p57 hypothetical protein phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38738 39127
NP_046886.1 NC_001900_p69 hypothetical protein phrog_642 unknown function unknown function -1 43771 44013
NP_046863.1 NC_001900_p46 hypothetical protein phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 32125 32832
NP_046850.1 NC_001900_p32 hypothetical protein phrog_1 integrase integration and excision -1 25359 26429
NP_046846.1 NC_001900_p28 hypothetical protein phrog_404 minor tail protein tail 1 22305 22571
NP_046870.1 NC_001900_p53 hypothetical protein phrog_221 metallo-phosphoesterase other -1 36794 37561
NP_046865.1 NC_001900_p48 hypothetical protein phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 33490 35571
NP_046821.1 NC_001900_p3 hypothetical protein phrog_8551 unknown function unknown function 1 2106 2357
NP_046879.1 NC_001900_p62 hypothetical protein phrog_3369 unknown function unknown function -1 40922 41077
NP_046880.1 NC_001900_p63 hypothetical protein phrog_397 unknown function unknown function -1 41074 41310
NP_046820.1 NC_001900_p2 hypothetical protein phrog_8314 unknown function unknown function 1 1327 2106
NP_046823.1 NC_001900_p5 hypothetical protein phrog_226 minor tail protein tail 1 2686 3153
NP_046827.1 NC_001900_p9 hypothetical protein phrog_102 endolysin lysis 1 6606 7370
NP_046839.1 NC_001900_p21 hypothetical protein phrog_117 major tail protein tail 1 14994 15590
NP_046854.1 NC_001900_p36 hypothetical protein phrog_542 unknown function unknown function -1 27992 28144
NP_046855.1 NC_001900_p37 hypothetical protein phrog_383 unknown function unknown function -1 28141 28527
NP_046851.1 NC_001900_p33 hypothetical protein phrog_733 excisionase integration and excision 1 26874 27311
NP_046860.1 NC_001900_p42 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 29339 31162
NP_046892.1 NC_001900_p76 hypothetical protein phrog_3207 unknown function unknown function -1 46329 46595
NP_046825.1 NC_001900_p7 hypothetical protein phrog_317 endolysin lysis 1 4706 6187
NP_046894.1 NC_001900_p78 hypothetical protein phrog_1392 unknown function unknown function -1 46770 47492
NP_046862.1 NC_001900_p44 hypothetical protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 31505 31915
NP_046840.1 NC_001900_p22 hypothetical protein phrog_330 tail assembly chaperone tail 1 15704 16108
NP_046842.1 NC_001900_p24 hypothetical protein phrog_305 tail length tape measure protein tail 1 16517 19030
NP_046878.1 NC_001900_p61 hypothetical protein phrog_289 GTP-binding domain other -1 40545 40922
NP_046836.1 NC_001900_p18 hypothetical protein phrog_320 head closure Hc1 connector 1 13846 14214
NP_046883.1 NC_001900_p66 hypothetical protein phrog_547 phosphoesterase other -1 42764 43363
NP_046849.1 NC_001900_p31 hypothetical protein phrog_2269 unknown function unknown function 1 25101 25304
NP_046829.1 NC_001900_p11 hypothetical protein phrog_104 portal protein head and packaging 1 9168 10625
NP_046867.1 NC_001900_p50 hypothetical protein phrog_499 unknown function unknown function -1 35765 35950
NP_046876.1 NC_001900_p59 hypothetical protein phrog_2187 unknown function unknown function -1 39572 39715
NP_046832.1 NC_001900_p14 hypothetical protein phrog_10 major head protein head and packaging 1 12096 13052
NP_046868.1 NC_001900_p51 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 35934 36641
NP_046873.1 NC_001900_p56 hypothetical protein phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38278 38736
NP_046891.1 NC_001900_p75 hypothetical protein phrog_1946 unknown function unknown function -1 46120 46314
NP_046864.1 NC_001900_p47 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 32900 33478
NP_046872.1 NC_001900_p55 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 38006 38278
NP_046824.1 NC_001900_p6 hypothetical protein phrog_1260 minor tail protein tail 1 3240 4208
NP_046856.1 NC_001900_p38 hypothetical protein phrog_2099 unknown function unknown function -1 28514 28798
NP_046848.1 NC_001900_p30 hypothetical protein phrog_356 minor tail protein tail 1 24421 25092
NP_046852.1 NC_001900_p34 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision -1 27435 27605
NP_046888.1 NC_001900_p71 hypothetical protein phrog_1562 unknown function unknown function -1 44867 45286
NP_046830.1 NC_001900_p12 hypothetical protein phrog_193 head maturation protease head and packaging 1 10655 11482
NP_046847.1 NC_001900_p29 hypothetical protein phrog_737 minor tail protein tail 1 22568 24421
NP_046835.1 NC_001900_p17 hypothetical protein phrog_830 head-tail connector protein connector 1 13652 13846
NP_046866.1 NC_001900_p49 hypothetical protein phrog_2046 unknown function unknown function -1 35571 35768
NP_046861.1 NC_001900_p43 hypothetical protein phrog_2094 unknown function unknown function -1 31170 31505
NP_046834.1 NC_001900_p16 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 13281 13655
NP_046857.1 NC_001900_p39 hypothetical protein phrog_10511 unknown function unknown function -1 28782 28982
NP_046889.1 NC_001900_p73 hypothetical protein phrog_15034 unknown function unknown function -1 45900 46031
NP_046843.1 NC_001900_p25 hypothetical protein phrog_106 minor tail protein tail 1 19051 20061
NP_046859.1 NC_001900_p41 hypothetical protein phrog_1545 unknown function unknown function -1 29188 29328
NP_046858.1 NC_001900_p40 hypothetical protein phrog_896 unknown function unknown function -1 28982 29188
NP_046881.1 NC_001900_p64 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision -1 41473 41859
NP_046853.1 NC_001900_p35 gp36.1 phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 27606 27992
NP_046828.1 NC_001900_p10 hypothetical protein phrog_9 terminase large subunit head and packaging 1 7384 9171
NP_046877.1 NC_001900_p60 gp59.2 phrog_789 esterase/lipase other -1 39712 40548
NP_046884.1 NC_001900_p67 hypothetical protein phrog_2731 unknown function unknown function -1 43360 43500
NP_046833.1 NC_001900_p15 hypothetical protein phrog_748 head-tail connector protein connector 1 13122 13277
NP_046887.1 NC_001900_p70 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 44061 44870
NP_046890.1 NC_001900_p74 hypothetical protein phrog_2001 unknown function unknown function -1 46028 46123
NP_046893.1 NC_001900_p77 hypothetical protein phrog_519 unknown function unknown function -1 46598 46762
NP_046875.1 NC_001900_p58 hypothetical protein phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 39124 39585
NP_046895.1 NC_001900_p79 hypothetical protein phrog_1676 unknown function unknown function -1 47628 47939