| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_001900 |
Definition |
Mycobacterium phage D29, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
49136 |
Host Name |
Mycobacterium tuberculosis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
79 |
%GC |
63.52 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_597858.1 | NC_001900_p45 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31987 | 32073 |
| NP_597859.1 | NC_001900_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45342 | 45611 |
| NP_046819.1 | NC_001900_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 401 | 1213 |
| NP_046822.1 | NC_001900_p4 | hypothetical protein | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2354 | 2650 |
| NP_046826.1 | NC_001900_p8 | hypothetical protein | phrog_526 | holin | lysis | 1 | 6184 | 6609 |
| NP_046871.1 | NC_001900_p54 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 37554 | 38009 |
| NP_046869.1 | NC_001900_p52 | hypothetical protein | phrog_2436 | unknown function | unknown function | -1 | 36638 | 36790 |
| NP_046885.1 | NC_001900_p68 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43497 | 43730 |
| NP_046845.1 | NC_001900_p27 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 21865 | 22308 |
| NP_046831.1 | NC_001900_p13 | hypothetical protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11498 | 12055 |
| NP_046841.1 | NC_001900_p23 | hypothetical protein | phrog_3656 | tail assembly chaperone | tail | 1 | 16222 | 16527 |
| NP_046844.1 | NC_001900_p26 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 20058 | 21848 |
| NP_046838.1 | NC_001900_p20 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14559 | 14978 |
| NP_046837.1 | NC_001900_p19 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14214 | 14549 |
| NP_046882.1 | NC_001900_p65 | hypothetical protein | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41891 | 42589 |
| NP_046874.1 | NC_001900_p57 | hypothetical protein | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38738 | 39127 |
| NP_046886.1 | NC_001900_p69 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 43771 | 44013 |
| NP_046863.1 | NC_001900_p46 | hypothetical protein | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 32125 | 32832 |
| NP_046850.1 | NC_001900_p32 | hypothetical protein | phrog_1 | integrase | integration and excision | -1 | 25359 | 26429 |
| NP_046846.1 | NC_001900_p28 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 22305 | 22571 |
| NP_046870.1 | NC_001900_p53 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 36794 | 37561 |
| NP_046865.1 | NC_001900_p48 | hypothetical protein | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 33490 | 35571 |
| NP_046821.1 | NC_001900_p3 | hypothetical protein | phrog_8551 | unknown function | unknown function | 1 | 2106 | 2357 |
| NP_046879.1 | NC_001900_p62 | hypothetical protein | phrog_3369 | unknown function | unknown function | -1 | 40922 | 41077 |
| NP_046880.1 | NC_001900_p63 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41074 | 41310 |
| NP_046820.1 | NC_001900_p2 | hypothetical protein | phrog_8314 | unknown function | unknown function | 1 | 1327 | 2106 |
| NP_046823.1 | NC_001900_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2686 | 3153 |
| NP_046827.1 | NC_001900_p9 | hypothetical protein | phrog_102 | endolysin | lysis | 1 | 6606 | 7370 |
| NP_046839.1 | NC_001900_p21 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 14994 | 15590 |
| NP_046854.1 | NC_001900_p36 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 27992 | 28144 |
| NP_046855.1 | NC_001900_p37 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 28141 | 28527 |
| NP_046851.1 | NC_001900_p33 | hypothetical protein | phrog_733 | excisionase | integration and excision | 1 | 26874 | 27311 |
| NP_046860.1 | NC_001900_p42 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29339 | 31162 |
| NP_046892.1 | NC_001900_p76 | hypothetical protein | phrog_3207 | unknown function | unknown function | -1 | 46329 | 46595 |
| NP_046825.1 | NC_001900_p7 | hypothetical protein | phrog_317 | endolysin | lysis | 1 | 4706 | 6187 |
| NP_046894.1 | NC_001900_p78 | hypothetical protein | phrog_1392 | unknown function | unknown function | -1 | 46770 | 47492 |
| NP_046862.1 | NC_001900_p44 | hypothetical protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 31505 | 31915 |
| NP_046840.1 | NC_001900_p22 | hypothetical protein | phrog_330 | tail assembly chaperone | tail | 1 | 15704 | 16108 |
| NP_046842.1 | NC_001900_p24 | hypothetical protein | phrog_305 | tail length tape measure protein | tail | 1 | 16517 | 19030 |
| NP_046878.1 | NC_001900_p61 | hypothetical protein | phrog_289 | GTP-binding domain | other | -1 | 40545 | 40922 |
| NP_046836.1 | NC_001900_p18 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13846 | 14214 |
| NP_046883.1 | NC_001900_p66 | hypothetical protein | phrog_547 | phosphoesterase | other | -1 | 42764 | 43363 |
| NP_046849.1 | NC_001900_p31 | hypothetical protein | phrog_2269 | unknown function | unknown function | 1 | 25101 | 25304 |
| NP_046829.1 | NC_001900_p11 | hypothetical protein | phrog_104 | portal protein | head and packaging | 1 | 9168 | 10625 |
| NP_046867.1 | NC_001900_p50 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35765 | 35950 |
| NP_046876.1 | NC_001900_p59 | hypothetical protein | phrog_2187 | unknown function | unknown function | -1 | 39572 | 39715 |
| NP_046832.1 | NC_001900_p14 | hypothetical protein | phrog_10 | major head protein | head and packaging | 1 | 12096 | 13052 |
| NP_046868.1 | NC_001900_p51 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35934 | 36641 |
| NP_046873.1 | NC_001900_p56 | hypothetical protein | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38278 | 38736 |
| NP_046891.1 | NC_001900_p75 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 46120 | 46314 |
| NP_046864.1 | NC_001900_p47 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 32900 | 33478 |
| NP_046872.1 | NC_001900_p55 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 38006 | 38278 |
| NP_046824.1 | NC_001900_p6 | hypothetical protein | phrog_1260 | minor tail protein | tail | 1 | 3240 | 4208 |
| NP_046856.1 | NC_001900_p38 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 28514 | 28798 |
| NP_046848.1 | NC_001900_p30 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 24421 | 25092 |
| NP_046852.1 | NC_001900_p34 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 27435 | 27605 |
| NP_046888.1 | NC_001900_p71 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44867 | 45286 |
| NP_046830.1 | NC_001900_p12 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 10655 | 11482 |
| NP_046847.1 | NC_001900_p29 | hypothetical protein | phrog_737 | minor tail protein | tail | 1 | 22568 | 24421 |
| NP_046835.1 | NC_001900_p17 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 13652 | 13846 |
| NP_046866.1 | NC_001900_p49 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 35571 | 35768 |
| NP_046861.1 | NC_001900_p43 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 31170 | 31505 |
| NP_046834.1 | NC_001900_p16 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13281 | 13655 |
| NP_046857.1 | NC_001900_p39 | hypothetical protein | phrog_10511 | unknown function | unknown function | -1 | 28782 | 28982 |
| NP_046889.1 | NC_001900_p73 | hypothetical protein | phrog_15034 | unknown function | unknown function | -1 | 45900 | 46031 |
| NP_046843.1 | NC_001900_p25 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 19051 | 20061 |
| NP_046859.1 | NC_001900_p41 | hypothetical protein | phrog_1545 | unknown function | unknown function | -1 | 29188 | 29328 |
| NP_046858.1 | NC_001900_p40 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 28982 | 29188 |
| NP_046881.1 | NC_001900_p64 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 41473 | 41859 |
| NP_046853.1 | NC_001900_p35 | gp36.1 | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 27606 | 27992 |
| NP_046828.1 | NC_001900_p10 | hypothetical protein | phrog_9 | terminase large subunit | head and packaging | 1 | 7384 | 9171 |
| NP_046877.1 | NC_001900_p60 | gp59.2 | phrog_789 | esterase/lipase | other | -1 | 39712 | 40548 |
| NP_046884.1 | NC_001900_p67 | hypothetical protein | phrog_2731 | unknown function | unknown function | -1 | 43360 | 43500 |
| NP_046833.1 | NC_001900_p15 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 13122 | 13277 |
| NP_046887.1 | NC_001900_p70 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44061 | 44870 |
| NP_046890.1 | NC_001900_p74 | hypothetical protein | phrog_2001 | unknown function | unknown function | -1 | 46028 | 46123 |
| NP_046893.1 | NC_001900_p77 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 46598 | 46762 |
| NP_046875.1 | NC_001900_p58 | hypothetical protein | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39124 | 39585 |
| NP_046895.1 | NC_001900_p79 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 47628 | 47939 |