| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_001954 |
Definition |
Enterobacteria phage If1, complete genome. |
Molecule type |
ss-DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Monodnaviria; Loebvirae; Hofneiviricota; Faserviricetes; Tubulavirales; Inoviridae; Infulavirus. |
DB of origin |
REFSEQ |
Length |
8454 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
10 |
%GC |
43.7 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_047358.1 | NC_001954_p7 | assembly protein | phrog_1675 | morphogenesis (protein I of M13) | head and packaging | 1 | 2502 | 3563 |
| NP_047360.1 | NC_001954_p9 | hypothetical protein | phrog_506 | transposase | integration and excision | 1 | 6040 | 7086 |
| NP_047353.1 | NC_001954_p2 | minor coat protein | phrog_7781 | minor coat protein | head and packaging | 1 | 294 | 392 |
| NP_047354.1 | NC_001954_p3 | minor coat protein | singleton | virion structural protein | head and packaging | 1 | 389 | 487 |
| NP_047352.1 | NC_001954_p1 | ss-DNA binding protein | phrog_8473 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 1 | 291 |
| NP_047359.1 | NC_001954_p8 | phage assembly protein | phrog_1012 | assembly (protein IV of M13) | head and packaging | 1 | 3544 | 4833 |
| NP_047356.1 | NC_001954_p5 | attachment protein | phrog_8482 | attachment protein | head and packaging | 1 | 776 | 2158 |
| NP_047361.1 | NC_001954_p10 | hypothetical protein | phrog_702 | replication protein | DNA, RNA and nucleotide metabolism | 1 | 7464 | 8432 |
| NP_047355.1 | NC_001954_p4 | major coat protein | phrog_1646 | major coat protein | head and packaging | 1 | 484 | 708 |
| NP_047357.1 | NC_001954_p6 | minor coat protein | phrog_1944 | minor head protein | head and packaging | 1 | 2161 | 2502 |