| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_001956 |
Definition |
Vibrio phage fs2, complete genome. |
Molecule type |
ss-DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Monodnaviria; Loebvirae; Hofneiviricota; Faserviricetes; Tubulavirales; Inoviridae; Saetivirus. |
DB of origin |
REFSEQ |
Length |
8651 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
9 |
%GC |
44.52 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_047364.1 | NC_001956_p1 | replication protein | phrog_91 | nicking at origin of replication | DNA, RNA and nucleotide metabolism | 1 | 288 | 2438 |
| NP_047367.1 | NC_001956_p4 | minor coat protein | phrog_31084 | minor head protein | head and packaging | 1 | 2876 | 2992 |
| NP_047368.1 | NC_001956_p5 | hypothetical protein | phrog_1646 | major coat protein | head and packaging | 1 | 3017 | 3238 |
| NP_047370.1 | NC_001956_p7 | minor coat protein | phrog_1944 | minor head protein | head and packaging | 1 | 4820 | 5170 |
| NP_047371.1 | NC_001956_p8 | assembly protein | phrog_1675 | morphogenesis (protein I of M13) | head and packaging | 1 | 5193 | 6278 |
| NP_047372.1 | NC_001956_p9 | phage assembly protein | phrog_1012 | assembly (protein IV of M13) | head and packaging | 1 | 6259 | 7761 |
| NP_047369.1 | NC_001956_p6 | hypothetical protein | phrog_1698 | minor head protein; receptor binding | head and packaging | 1 | 3317 | 4813 |
| NP_047365.1 | NC_001956_p2 | hypothetical protein | phrog_5738 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 2435 | 2749 |
| NP_047366.1 | NC_001956_p3 | hypothetical protein | phrog_7781 | minor coat protein | head and packaging | 1 | 2760 | 2879 |