Genomic map of Streptomyces virus phiC31 (NC_001978)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_001978
Definition
Bacteriophage phi-C31 complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Lomovskayavirus.
DB of origin
REFSEQ
Length
41491
Host Name
Streptomyces
Host domain
Bacteria
Is prophage?
undef
Number of proteins
53
%GC
63.61
Number of singletons
9
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_047937.1 NC_001978_p16 hypothetical protein phrog_1885 minor tail protein tail 1 13017 14033
NP_047971.2 NC_001978_p48 hypothetical protein phrog_19898 unknown function unknown function 1 37114 37638
NP_047973.1 NC_001978_p50 hypothetical protein singleton unknown function unknown function 1 37953 38279
NP_047946.1 NC_001978_p25 hypothetical protein phrog_298 exonuclease DNA, RNA and nucleotide metabolism 1 21820 22665
NP_047935.1 NC_001978_p14 hypothetical protein phrog_33 distal tail protein Dit tail 1 11124 11990
NP_047933.1 NC_001978_p12 hypothetical protein phrog_17335 tail protein tail 1 8406 8687
NP_047927.1 NC_001978_p6 hypothetical protein phrog_10 major head protein head and packaging 1 4893 6071
NP_047934.1 NC_001978_p13 hypothetical protein phrog_28 tail length tape measure protein tail 1 8888 11077
NP_047936.1 NC_001978_p15 hypothetical protein phrog_13571 virion structural protein head and packaging 1 11990 12976
NP_047963.1 NC_001978_p41 hypothetical protein phrog_3641 unknown function unknown function 1 33564 33758
NP_047924.1 NC_001978_p3 hypothetical protein phrog_9 terminase large subunit head and packaging 1 1282 2841
NP_047953.1 NC_001978_p32 hypothetical protein phrog_2914 endonuclease VII DNA, RNA and nucleotide metabolism 1 24685 25050
NP_047922.1 NC_001978_p1 hypothetical protein phrog_83 terminase small subunit head and packaging 1 145 585
NP_047950.1 NC_001978_p29 hypothetical protein phrog_13282 unknown function unknown function 1 24014 24304
NP_047939.1 NC_001978_p18 hypothetical protein singleton unknown function unknown function 1 14869 15141
NP_047956.2 NC_001978_p34 hypothetical protein phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 27630 29483
NP_047928.1 NC_001978_p7 hypothetical protein phrog_22424 unknown function unknown function 1 6144 6512
NP_047932.1 NC_001978_p11 hypothetical protein phrog_17335 tail protein tail 1 8406 8878
NP_047943.1 NC_001978_p22 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 18543 19109
NP_047941.2 NC_001978_p20 hypothetical protein phrog_9589 endolysin lysis 1 17105 18193
NP_047925.1 NC_001978_p4 hypothetical protein phrog_12 portal protein head and packaging 1 2886 4259
NP_047960.1 NC_001978_p38 hypothetical protein phrog_22972 unknown function unknown function 1 32027 32347
NP_047961.1 NC_001978_p39 hypothetical protein phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 32588 33301
NP_047948.2 NC_001978_p27 hypothetical protein phrog_9220 unknown function unknown function 1 23098 23832
NP_047930.1 NC_001978_p9 hypothetical protein phrog_290 minor tail protein tail 1 6989 7975
NP_047929.1 NC_001978_p8 hypothetical protein phrog_22587 unknown function unknown function 1 6519 6956
NP_047958.1 NC_001978_p36 hypothetical protein phrog_27777 unknown function unknown function 1 31242 31409
NP_047923.1 NC_001978_p2 hypothetical protein singleton unknown function unknown function -1 640 1170
NP_047964.1 NC_001978_p42 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 33770 34021
NP_047974.1 NC_001978_p51 integrase phrog_95 integrase integration and excision 1 38447 40264
NP_047952.1 NC_001978_p31 hypothetical protein singleton unknown function unknown function 1 24570 24695
NP_047966.1 NC_001978_p44 hypothetical protein singleton unknown function unknown function 1 34492 34764
NP_047976.1 NC_001978_p53 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 41099 41446
NP_047949.1 NC_001978_p28 gp4a phrog_14927 unknown function unknown function 1 23832 24014
NP_047942.1 NC_001978_p21 hypothetical protein phrog_18607 unknown function unknown function 1 18300 18479
NP_047972.1 NC_001978_p49 hypothetical protein singleton unknown function unknown function 1 37654 37956
NP_047967.1 NC_001978_p45 hypothetical protein phrog_24218 unknown function unknown function 1 35028 35384
NP_047940.1 NC_001978_p19 hypothetical protein phrog_14726 tail fiber protein tail 1 15154 17001
NP_047957.1 NC_001978_p35 hypothetical protein phrog_15865 RNA polymerase sigma factor transcription regulation 1 29958 31148
NP_047926.2 NC_001978_p5 hypothetical protein phrog_80 head maturation protease head and packaging 1 4240 4881
NP_047945.1 NC_001978_p24 hypothetical protein singleton unknown function unknown function 1 21396 21569
NP_047944.2 NC_001978_p23 repressor phrog_19947 unknown function unknown function 1 19274 21325
NP_047947.1 NC_001978_p26 hypothetical protein singleton unknown function unknown function 1 22722 22943
NP_047959.1 NC_001978_p37 hypothetical protein phrog_1106 unknown function unknown function 1 31551 31946
NP_047951.1 NC_001978_p30 hypothetical protein phrog_15072 unknown function unknown function 1 24388 24573
NP_047970.1 NC_001978_p47 hypothetical protein phrog_25954 unknown function unknown function 1 36291 37007
NP_047975.1 NC_001978_p52 hypothetical protein phrog_3555 unknown function unknown function 1 40779 41015
NP_047968.2 NC_001978_p46 hypothetical protein phrog_25369 unknown function unknown function 1 35469 36218
NP_047931.1 NC_001978_p10 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 7975 8406
NP_047938.1 NC_001978_p17 hypothetical protein phrog_29471 unknown function unknown function 1 14048 14872
NP_047962.1 NC_001978_p40 hypothetical protein singleton unknown function unknown function 1 33298 33567
NP_047965.1 NC_001978_p43 hypothetical protein phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 34065 34418
NP_047955.2 NC_001978_p33 gp9a phrog_6088 DNA primase DNA, RNA and nucleotide metabolism 1 25107 27524