| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_002072 |
Definition |
Streptococcus phage DT1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Moineauvirus. |
DB of origin |
REFSEQ |
Length |
34815 |
Host Name |
Streptococcus thermophilus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
45 |
%GC |
39.07 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_049409.1 | NC_002072_p19 | hypothetical protein | phrog_1060 | unknown function | unknown function | 1 | 20327 | 20722 |
| NP_049433.1 | NC_002072_p44 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 33693 | 34091 |
| NP_049394.1 | NC_002072_p6 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3185 | 4345 |
| NP_049390.1 | NC_002072_p2 | hypothetical protein | phrog_83 | terminase small subunit | head and packaging | 1 | 601 | 1062 |
| NP_049410.1 | NC_002072_p20 | hypothetical protein | phrog_1567 | unknown function | unknown function | 1 | 20729 | 20875 |
| NP_049396.1 | NC_002072_p8 | major head protein | phrog_10 | major head protein | head and packaging | 1 | 5327 | 6208 |
| NP_049393.1 | NC_002072_p5 | head-tail joining protein | phrog_1142 | unknown function | unknown function | 1 | 2988 | 3167 |
| NP_597885.1 | NC_002072_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23160 | 23270 |
| NP_049397.1 | NC_002072_p9 | DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 6223 | 6537 |
| NP_049389.1 | NC_002072_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 304 | 474 |
| NP_049428.1 | NC_002072_p39 | hypothetical protein | phrog_1489 | unknown function | unknown function | 1 | 31262 | 31417 |
| NP_049434.1 | NC_002072_p45 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 34164 | 34721 |
| NP_049412.1 | NC_002072_p22 | holin | phrog_297 | holin | lysis | 1 | 21224 | 21466 |
| NP_049405.1 | NC_002072_p16 | tail component protein | phrog_202 | distal tail protein Dit | tail | 1 | 13941 | 15497 |
| NP_049417.1 | NC_002072_p28 | cro-like regulatory protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 24033 | 24236 |
| NP_049413.1 | NC_002072_p23 | lysin | phrog_998 | endolysin | lysis | 1 | 21468 | 22070 |
| NP_049414.1 | NC_002072_p24 | hypothetical protein | phrog_9496 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 22277 | 22462 |
| NP_049423.1 | NC_002072_p34 | hypothetical protein | phrog_695 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 27742 | 28557 |
| NP_049403.2 | NC_002072_p15 | tail component protein | phrog_167 | tail length tape measure protein | tail | 1 | 8974 | 13944 |
| NP_049400.1 | NC_002072_p12 | tail component protein | phrog_1217 | tail protein | tail | 1 | 7321 | 7692 |
| NP_049392.1 | NC_002072_p4 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1875 | 2984 |
| NP_049411.1 | NC_002072_p21 | hypothetical protein | phrog_1296 | holin | lysis | 1 | 20893 | 21216 |
| NP_049431.1 | NC_002072_p42 | hypothetical protein | phrog_884 | unknown function | unknown function | 1 | 32410 | 32712 |
| NP_049402.1 | NC_002072_p14 | tail component protein | phrog_1346 | tail protein | tail | 1 | 8402 | 8755 |
| NP_049391.1 | NC_002072_p3 | terminase small subunit | phrog_4914 | terminase large subunit | head and packaging | 1 | 1103 | 1792 |
| NP_049422.1 | NC_002072_p33 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 27284 | 27739 |
| NP_049429.1 | NC_002072_p40 | hypothetical protein | phrog_5513 | unknown function | unknown function | 1 | 31546 | 31758 |
| NP_049430.1 | NC_002072_p41 | hypothetical protein | phrog_1994 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 31938 | 32435 |
| NP_049416.1 | NC_002072_p27 | hypothetical protein | phrog_4964 | unknown function | unknown function | 1 | 23296 | 23847 |
| NP_049432.1 | NC_002072_p43 | hypothetical protein | phrog_1814 | unknown function | unknown function | 1 | 32709 | 33416 |
| NP_049407.2 | NC_002072_p18 | hypothetical protein | phrog_372 | tail protein | tail | 1 | 18244 | 20301 |
| NP_049426.1 | NC_002072_p37 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 30725 | 31048 |
| NP_049406.1 | NC_002072_p17 | tail-host specificity protein | phrog_588 | tail fiber protein and host specificity | tail | 1 | 15497 | 18241 |
| NP_049427.1 | NC_002072_p38 | hypothetical protein | phrog_1982 | unknown function | unknown function | 1 | 31029 | 31277 |
| NP_049415.2 | NC_002072_p25 | hypothetical protein | phrog_4238 | endolysin | lysis | 1 | 22529 | 22756 |
| NP_049418.1 | NC_002072_p29 | hypothetical protein | phrog_1022 | unknown function | unknown function | 1 | 24507 | 24647 |
| NP_049398.1 | NC_002072_p10 | head-tail joining protein | phrog_25 | head closure Hc1 | connector | 1 | 6537 | 6887 |
| NP_049421.1 | NC_002072_p32 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 25946 | 27277 |
| NP_049425.1 | NC_002072_p36 | hypothetical protein | phrog_9118 | unknown function | unknown function | 1 | 30312 | 30743 |
| NP_049420.1 | NC_002072_p31 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 25270 | 25971 |
| NP_049395.1 | NC_002072_p7 | scaffolding protein | phrog_94 | head maturation protease | head and packaging | 1 | 4332 | 5000 |
| NP_049399.1 | NC_002072_p11 | tail component protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6894 | 7316 |
| NP_049401.1 | NC_002072_p13 | major tail protein | phrog_88 | major tail protein | tail | 1 | 7715 | 8326 |
| NP_049419.1 | NC_002072_p30 | hypothetical protein | phrog_4084 | unknown function | unknown function | 1 | 24909 | 25223 |
| NP_049424.1 | NC_002072_p35 | primase | phrog_864 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 28544 | 30058 |