Genomic map of Staphylococcus phage PVL (NC_002321)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_002321
Definition
Staphylococcus phage PVL proviral DNA, complete sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Biseptimavirus; unclassified Biseptimavirus.
DB of origin
REFSEQ
Length
41401
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
62
%GC
33.55
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_058489.1 NC_002321_p50 hypothetical protein phrog_258 virulence associated other 1 37073 37315
NP_058449.1 NC_002321_p10 hypothetical protein singleton unknown function unknown function 1 6470 6640
NP_058448.1 NC_002321_p9 hypothetical protein phrog_25 head closure Hc1 connector 1 6135 6470
NP_058497.1 NC_002321_p58 hypothetical protein phrog_5652 unknown function unknown function 1 39059 39709
NP_058490.1 NC_002321_p51 hypothetical protein phrog_266 unknown function unknown function 1 37356 37604
NP_058482.1 NC_002321_p43 hypothetical protein phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 33038 33958
NP_058453.1 NC_002321_p14 hypothetical protein phrog_4704 tail length tape measure protein tail 1 8926 11010
NP_058461.1 NC_002321_p22 hypothetical protein phrog_37523 unknown function unknown function 1 19676 19828
NP_058475.1 NC_002321_p36 hypothetical protein phrog_585 unknown function unknown function -1 29589 29968
NP_058455.1 NC_002321_p16 hypothetical protein phrog_8537 unknown function unknown function 1 12896 13567
NP_058469.1 NC_002321_p30 repressor phrog_4 transcriptional repressor transcription regulation -1 26588 27358
NP_058470.1 NC_002321_p31 hypothetical protein singleton unknown function unknown function 1 27499 27657
NP_058440.1 NC_002321_p1 hypothetical protein phrog_83 terminase small subunit head and packaging 1 67 534
NP_058498.1 NC_002321_p59 hypothetical protein phrog_386 unknown function unknown function 1 39706 39909
NP_058465.1 NC_002321_p26 LukS-PV phrog_965 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 22041 22979
NP_058496.1 NC_002321_p57 hypothetical protein phrog_5788 unknown function unknown function 1 38900 39052
NP_058471.1 NC_002321_p32 hypothetical protein phrog_6175 unknown function unknown function 1 27739 28014
NP_058459.1 NC_002321_p20 hypothetical protein phrog_19653 minor head protein head and packaging 1 17599 18855
NP_058451.1 NC_002321_p12 hypothetical protein phrog_88 major tail protein tail 1 7224 8177
NP_058447.1 NC_002321_p8 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 5816 6148
NP_058464.1 NC_002321_p25 hypothetical protein phrog_9761 unknown function unknown function 1 21803 21934
NP_058492.1 NC_002321_p53 hypothetical protein phrog_2027 unknown function unknown function 1 38152 38388
NP_058488.1 NC_002321_p49 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 36701 37069
NP_058491.1 NC_002321_p52 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 37579 38106
NP_058501.1 NC_002321_p62 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 40988 41329
NP_058493.1 NC_002321_p54 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 38385 38573
NP_058442.1 NC_002321_p3 hypothetical protein phrog_1142 unknown function unknown function 1 2206 2445
NP_058486.1 NC_002321_p47 hypothetical protein phrog_433 unknown function unknown function 1 36057 36275
NP_058477.1 NC_002321_p38 hypothetical protein phrog_369 unknown function unknown function 1 30298 30459
NP_058466.1 NC_002321_p27 LukF-PV phrog_965 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 22981 23958
NP_058472.1 NC_002321_p33 hypothetical protein singleton unknown function unknown function -1 28172 28582
NP_058452.1 NC_002321_p13 hypothetical protein phrog_187 head-tail adaptor connector 1 8242 8688
NP_058476.1 NC_002321_p37 hypothetical protein phrog_534 DNA binding protein DNA, RNA and nucleotide metabolism 1 30023 30286
NP_058483.1 NC_002321_p44 hypothetical protein phrog_392 metal-dependent hydrolase other 1 34171 34656
NP_058485.1 NC_002321_p46 hypothetical protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 35157 36050
NP_058441.1 NC_002321_p2 hypothetical protein phrog_9 terminase large subunit head and packaging 1 537 2231
NP_058481.1 NC_002321_p42 hypothetical protein phrog_20188 endonuclease DNA, RNA and nucleotide metabolism 1 32215 33036
NP_058454.1 NC_002321_p15 hypothetical protein phrog_4070 tail length tape measure protein tail 1 11241 12860
NP_058479.1 NC_002321_p40 hypothetical protein phrog_2527 unknown function unknown function 1 30807 31085
NP_058450.1 NC_002321_p11 hypothetical protein phrog_78 tail terminator connector 1 6843 7223
NP_058478.1 NC_002321_p39 hypothetical protein phrog_401 unknown function unknown function 1 30553 30813
NP_058445.1 NC_002321_p6 capsid protein phrog_10 major head protein head and packaging 1 4366 5613
NP_058495.1 NC_002321_p56 hypothetical protein phrog_152 RinB-like transcriptional activator transcription regulation 1 38736 38900
NP_058444.1 NC_002321_p5 hypothetical protein phrog_80 head maturation protease head and packaging 1 3694 4278
NP_058456.1 NC_002321_p17 hypothetical protein phrog_5471 unknown function unknown function 1 13567 13926
NP_058500.1 NC_002321_p61 hypothetical protein phrog_229 MazG-like pyrophosphatase other 1 40517 40969
NP_058462.1 NC_002321_p23 holin phrog_263 holin lysis 1 19886 20188
NP_058443.1 NC_002321_p4 portal protein phrog_12 portal protein head and packaging 1 2451 3701
NP_058487.1 NC_002321_p48 hypothetical protein phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 36284 36688
NP_058494.1 NC_002321_p55 hypothetical protein phrog_3885 unknown function unknown function 1 38542 38748
NP_058484.1 NC_002321_p45 ssDNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 34657 35127
NP_058467.1 NC_002321_p28 integrase phrog_1 integrase integration and excision -1 24300 25505
NP_058460.1 NC_002321_p21 hypothetical protein phrog_1747 unknown function unknown function 1 19043 19330
NP_058473.1 NC_002321_p34 anti repressor phrog_63 anti-repressor Ant transcription regulation 1 28639 29388
NP_058468.1 NC_002321_p29 hypothetical protein phrog_716 Na/K ATPase other 1 25631 26245
NP_058457.1 NC_002321_p18 hypothetical protein phrog_202 distal tail protein Dit tail 1 13923 15056
NP_058480.1 NC_002321_p41 hypothetical protein phrog_10445 unknown function unknown function 1 31082 32080
NP_058474.1 NC_002321_p35 hypothetical protein phrog_845 unknown function unknown function 1 29404 29601
NP_058446.1 NC_002321_p7 hypothetical protein phrog_933 unknown function unknown function 1 5649 5807
NP_058463.1 NC_002321_p24 amidase (peptidoglycan hydrolase) phrog_489 endolysin lysis 1 20199 21653
NP_058499.1 NC_002321_p60 hypothetical protein phrog_1058 unknown function unknown function 1 39932 40402
NP_058458.1 NC_002321_p19 hypothetical protein phrog_1786 minor head protein head and packaging 1 15263 17542