Genomic map of Pseudomonas virus D3 (NC_002484)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_002484
Definition
Bacteriophage D3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Detrevirus.
DB of origin
REFSEQ
Length
56426
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
99
%GC
57.8
Number of singletons
4
Number of paralogs
6

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_061555.2 NC_002484_p63 hypothetical protein phrog_5614 unknown function unknown function -1 39410 39883
NP_061519.1 NC_002484_p22 hypothetical protein phrog_32611 unknown function unknown function 1 14837 15208
NP_061520.1 NC_002484_p23 hypothetical protein phrog_35241 unknown function unknown function 1 15219 15413
NP_061517.1 NC_002484_p20 hypothetical protein phrog_384 virion structural protein head and packaging 1 13793 14272
NP_061501.1 NC_002484_p5 ClpP protease phrog_1684 head maturation protease head and packaging 1 3572 4462
NP_061522.1 NC_002484_p25 hypothetical protein phrog_469 tail protein tail 1 15847 18576
YP_009173790.1 NC_002484_p99 HNH endonuclease phrog_589 HNH endonuclease DNA, RNA and nucleotide metabolism 1 55935 56249
NP_061512.1 NC_002484_p16 major tail protein phrog_158 major tail protein tail 1 10074 10595
NP_061576.1 NC_002484_p85 hypothetical protein phrog_2529 unknown function unknown function 1 51274 51582
NP_061589.1 NC_002484_p98 hypothetical protein phrog_6225 unknown function unknown function 1 55682 55942
NP_061574.1 NC_002484_p83 hypothetical protein phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism 1 50065 50697
NP_061583.1 NC_002484_p92 hypothetical protein phrog_198 holin lysis 1 54241 54645
NP_061532.2 NC_002484_p36 excisionase phrog_12527 excisionase integration and excision -1 28099 28413
NP_061548.2 NC_002484_p56 ERF family protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 35742 36494
NP_061507.2 NC_002484_p11 KilA-N domain protein phrog_129 transcriptional regulator transcription regulation 1 7184 7684
NP_061498.1 NC_002484_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 419 2110
NP_061538.1 NC_002484_p45 hypothetical protein phrog_3592 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 31282 31641
NP_061505.1 NC_002484_p9 head-tail connector protein phrog_40 head-tail adaptor Ad1 connector 1 6390 6710
NP_061556.1 NC_002484_p64 hypothetical protein phrog_5315 unknown function unknown function -1 39880 40026
NP_061582.1 NC_002484_p91 hypothetical protein phrog_26944 unknown function unknown function 1 53675 53989
NP_061521.1 NC_002484_p24 hypothetical protein phrog_329 minor tail protein tail 1 15468 15875
NP_061531.1 NC_002484_p35 integrase phrog_1 integrase integration and excision -1 27104 28213
NP_061544.1 NC_002484_p52 hypothetical protein singleton unknown function unknown function -1 34294 34551
NP_061525.2 NC_002484_p29 O-antigen beta polymerase phrog_19842 polymerase DNA, RNA and nucleotide metabolism -1 23421 24581
NP_061552.1 NC_002484_p60 hypothetical protein phrog_6530 unknown function unknown function -1 38265 38639
NP_061546.1 NC_002484_p54 transcriptional regulator phrog_13895 transcriptional regulator transcription regulation -1 34780 35115
NP_061534.1 NC_002484_p38 hypothetical protein phrog_2201 unknown function unknown function -1 28746 28979
NP_061586.1 NC_002484_p95 hypothetical protein phrog_19728 unknown function unknown function 1 55155 55280
NP_061572.1 NC_002484_p81 hypothetical protein phrog_4405 unknown function unknown function 1 49361 49870
NP_061523.1 NC_002484_p26 hypothetical protein phrog_13768 tail protein tail 1 18636 20879
NP_061580.1 NC_002484_p89 hypothetical protein phrog_3412 unknown function unknown function 1 52715 53293
NP_061506.1 NC_002484_p10 phage head-tail adaptor phrog_25 head closure Hc1 connector 1 6711 7067
NP_061518.1 NC_002484_p21 hypothetical protein phrog_396 minor tail protein tail 1 14256 14747
NP_061529.1 NC_002484_p33 hypothetical protein phrog_3580 unknown function unknown function 1 26349 26609
NP_061524.1 NC_002484_p28 O-antigen acetylase phrog_6705 O-antigen acetylase moron, auxiliary metabolic gene and host takeover 1 21282 23345
NP_061537.1 NC_002484_p42 hypothetical protein phrog_343 unknown function unknown function -1 30192 30503
NP_061528.1 NC_002484_p32 hypothetical protein phrog_3774 unknown function unknown function 1 25984 26352
YP_009173785.1 NC_002484_p47 hypothetical protein phrog_36542 unknown function unknown function -1 32281 32499
YP_009173783.1 NC_002484_p44 hypothetical protein phrog_3230 unknown function unknown function -1 30807 31301
NP_061569.1 NC_002484_p78 replication protein O phrog_5810 replication initiation protein DNA, RNA and nucleotide metabolism 1 46919 47908
NP_061581.1 NC_002484_p90 hypothetical protein singleton unknown function unknown function 1 53535 53633
NP_061579.1 NC_002484_p88 hypothetical protein phrog_7514 unknown function unknown function 1 52330 52647
NP_061561.1 NC_002484_p70 hypothetical protein phrog_3483 unknown function unknown function -1 42415 42963
NP_061554.1 NC_002484_p62 hypothetical protein phrog_11137 unknown function unknown function -1 39237 39407
NP_061553.1 NC_002484_p61 hypothetical protein phrog_4029 unknown function unknown function -1 38636 39244
NP_061573.1 NC_002484_p82 DksA-like zinc finger domain containing protein phrog_54 DksA-like zinc-finger protein other 1 49872 50075
YP_009173787.1 NC_002484_p50 hypothetical protein phrog_6604 unknown function unknown function -1 33911 34114
NP_061566.1 NC_002484_p75 Cro protein phrog_35 transcriptional repressor transcription regulation 1 46128 46349
NP_061564.2 NC_002484_p73 hypothetical protein phrog_4245 unknown function unknown function -1 44080 44640
NP_061513.1 NC_002484_p17 hypothetical protein phrog_1749 tail assembly chaperone tail 1 10605 10964
NP_061540.1 NC_002484_p48 hypothetical protein phrog_3956 unknown function unknown function -1 32492 33772
NP_061584.1 NC_002484_p93 hypothetical protein phrog_217 holin lysis 1 54638 54922
NP_061545.2 NC_002484_p53 hypothetical protein phrog_14444 unknown function unknown function -1 34611 34769
YP_009173788.1 NC_002484_p67 hypothetical protein phrog_13613 unknown function unknown function -1 41083 41355
NP_061567.1 NC_002484_p76 CII protein phrog_725 CII-like regulator transcription regulation 1 46351 46659
YP_009173789.1 NC_002484_p68 hypothetical protein phrog_4887 unknown function unknown function -1 41355 41630
NP_061535.1 NC_002484_p39 hypothetical protein phrog_5086 unknown function unknown function -1 28979 29305
NP_061510.1 NC_002484_p14 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 9136 9630
NP_061575.1 NC_002484_p84 hypothetical protein phrog_319 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 50690 51277
NP_061549.1 NC_002484_p57 hypothetical protein phrog_1376 unknown function unknown function -1 36503 37567
NP_061530.2 NC_002484_p34 hypothetical protein phrog_3944 unknown function unknown function 1 26645 26908
NP_061536.1 NC_002484_p40 hypothetical protein phrog_4029 unknown function unknown function -1 29302 29991
NP_061562.1 NC_002484_p71 hypothetical protein phrog_4801 unknown function unknown function -1 42960 43385
YP_009173786.1 NC_002484_p49 hypothetical protein phrog_16171 unknown function unknown function -1 33769 33939
NP_061588.1 NC_002484_p97 hypothetical protein phrog_9003 unknown function unknown function 1 55434 55685
YP_009173777.1 NC_002484_p12 hypothetical protein phrog_6804 unknown function unknown function 1 7748 8575
NP_061587.1 NC_002484_p96 hypothetical protein phrog_2612 unknown function unknown function 1 55273 55434
NP_061571.1 NC_002484_p80 hypothetical protein phrog_8532 unknown function unknown function 1 49245 49364
YP_009173776.1 NC_002484_p8 hypothetical protein phrog_4603 alpha-2;3-sialyltransferase other 1 5951 6409
NP_061550.2 NC_002484_p58 hypothetical protein phrog_5086 unknown function unknown function -1 37749 38093
NP_061499.1 NC_002484_p3 hypothetical protein phrog_4810 unknown function unknown function 1 2107 2271
YP_009173782.1 NC_002484_p43 hypothetical protein phrog_5315 unknown function unknown function -1 30488 30634
NP_061526.2 NC_002484_p30 hypothetical protein phrog_3377 HNH endonuclease DNA, RNA and nucleotide metabolism -1 24743 25351
NP_061563.1 NC_002484_p72 hypothetical protein phrog_25727 unknown function unknown function -1 43628 43921
NP_061514.2 NC_002484_p18 hypothetical protein phrog_337 tail protein tail 1 10982 11242
NP_061527.1 NC_002484_p31 endolysin phrog_90 endolysin lysis 1 25505 25987
NP_061565.1 NC_002484_p74 cI repressor protein phrog_4 transcriptional repressor transcription regulation -1 45369 46040
YP_009173780.1 NC_002484_p27 inhibitor of alpha-polymerase phrog_34981 unknown function unknown function -1 21004 21099
NP_061585.1 NC_002484_p94 hypothetical protein phrog_1046 unknown function unknown function 1 54922 55155
NP_061557.1 NC_002484_p65 Lar family protein phrog_3592 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 40161 40430
NP_061533.1 NC_002484_p37 hypothetical protein phrog_38549 unknown function unknown function -1 28588 28749
YP_009173779.1 NC_002484_p19 tail tape measure protein phrog_2854 tail length tape measure protein tail 1 11292 13796
NP_061560.1 NC_002484_p69 hypothetical protein singleton unknown function unknown function -1 41630 42418
NP_061578.1 NC_002484_p87 NinG protein phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism 1 51689 52330
NP_061497.1 NC_002484_p1 terminase small subunit phrog_83 terminase small subunit head and packaging 1 37 417
NP_061502.1 NC_002484_p6 major capsid protein phrog_10 major head protein head and packaging 1 4459 5646
YP_009173775.1 NC_002484_p7 hypothetical protein phrog_7993 unknown function unknown function 1 5691 5978
YP_009173781.1 NC_002484_p41 transcriptional regulator phrog_2440 transcriptional regulator transcription regulation -1 29988 30191
NP_061547.1 NC_002484_p55 exonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 35112 35738
NP_061568.1 NC_002484_p77 hypothetical protein phrog_6111 unknown function unknown function 1 46659 46922
YP_009173778.1 NC_002484_p13 hypothetical protein phrog_6564 methyltransferase other 1 8526 9143
NP_061511.1 NC_002484_p15 hypothetical protein phrog_78 tail terminator connector 1 9633 9998
NP_061570.1 NC_002484_p79 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 47905 49245
NP_061543.1 NC_002484_p51 hypothetical protein singleton unknown function unknown function -1 34135 34266
NP_061577.1 NC_002484_p86 hypothetical protein phrog_37266 unknown function unknown function 1 51579 51692
NP_061500.1 NC_002484_p4 portal protein phrog_12 portal protein head and packaging 1 2264 3568
NP_061551.1 NC_002484_p59 hypothetical protein phrog_6457 unknown function unknown function -1 38086 38268
NP_061558.1 NC_002484_p66 hypothetical protein phrog_3592 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 40423 41079
YP_009173784.1 NC_002484_p46 hypothetical protein phrog_3592 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 31634 32284