| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_002484 |
Definition |
Bacteriophage D3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Detrevirus. |
DB of origin |
REFSEQ |
Length |
56426 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
99 |
%GC |
57.8 |
Number of singletons |
4 |
Number of paralogs |
6 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_061555.2 | NC_002484_p63 | hypothetical protein | phrog_5614 | unknown function | unknown function | -1 | 39410 | 39883 |
| NP_061519.1 | NC_002484_p22 | hypothetical protein | phrog_32611 | unknown function | unknown function | 1 | 14837 | 15208 |
| NP_061520.1 | NC_002484_p23 | hypothetical protein | phrog_35241 | unknown function | unknown function | 1 | 15219 | 15413 |
| NP_061517.1 | NC_002484_p20 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 13793 | 14272 |
| NP_061501.1 | NC_002484_p5 | ClpP protease | phrog_1684 | head maturation protease | head and packaging | 1 | 3572 | 4462 |
| NP_061522.1 | NC_002484_p25 | hypothetical protein | phrog_469 | tail protein | tail | 1 | 15847 | 18576 |
| YP_009173790.1 | NC_002484_p99 | HNH endonuclease | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 55935 | 56249 |
| NP_061512.1 | NC_002484_p16 | major tail protein | phrog_158 | major tail protein | tail | 1 | 10074 | 10595 |
| NP_061576.1 | NC_002484_p85 | hypothetical protein | phrog_2529 | unknown function | unknown function | 1 | 51274 | 51582 |
| NP_061589.1 | NC_002484_p98 | hypothetical protein | phrog_6225 | unknown function | unknown function | 1 | 55682 | 55942 |
| NP_061574.1 | NC_002484_p83 | hypothetical protein | phrog_374 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 50065 | 50697 |
| NP_061583.1 | NC_002484_p92 | hypothetical protein | phrog_198 | holin | lysis | 1 | 54241 | 54645 |
| NP_061532.2 | NC_002484_p36 | excisionase | phrog_12527 | excisionase | integration and excision | -1 | 28099 | 28413 |
| NP_061548.2 | NC_002484_p56 | ERF family protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 35742 | 36494 |
| NP_061507.2 | NC_002484_p11 | KilA-N domain protein | phrog_129 | transcriptional regulator | transcription regulation | 1 | 7184 | 7684 |
| NP_061498.1 | NC_002484_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 419 | 2110 |
| NP_061538.1 | NC_002484_p45 | hypothetical protein | phrog_3592 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | -1 | 31282 | 31641 |
| NP_061505.1 | NC_002484_p9 | head-tail connector protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 6390 | 6710 |
| NP_061556.1 | NC_002484_p64 | hypothetical protein | phrog_5315 | unknown function | unknown function | -1 | 39880 | 40026 |
| NP_061582.1 | NC_002484_p91 | hypothetical protein | phrog_26944 | unknown function | unknown function | 1 | 53675 | 53989 |
| NP_061521.1 | NC_002484_p24 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 15468 | 15875 |
| NP_061531.1 | NC_002484_p35 | integrase | phrog_1 | integrase | integration and excision | -1 | 27104 | 28213 |
| NP_061544.1 | NC_002484_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34294 | 34551 |
| NP_061525.2 | NC_002484_p29 | O-antigen beta polymerase | phrog_19842 | polymerase | DNA, RNA and nucleotide metabolism | -1 | 23421 | 24581 |
| NP_061552.1 | NC_002484_p60 | hypothetical protein | phrog_6530 | unknown function | unknown function | -1 | 38265 | 38639 |
| NP_061546.1 | NC_002484_p54 | transcriptional regulator | phrog_13895 | transcriptional regulator | transcription regulation | -1 | 34780 | 35115 |
| NP_061534.1 | NC_002484_p38 | hypothetical protein | phrog_2201 | unknown function | unknown function | -1 | 28746 | 28979 |
| NP_061586.1 | NC_002484_p95 | hypothetical protein | phrog_19728 | unknown function | unknown function | 1 | 55155 | 55280 |
| NP_061572.1 | NC_002484_p81 | hypothetical protein | phrog_4405 | unknown function | unknown function | 1 | 49361 | 49870 |
| NP_061523.1 | NC_002484_p26 | hypothetical protein | phrog_13768 | tail protein | tail | 1 | 18636 | 20879 |
| NP_061580.1 | NC_002484_p89 | hypothetical protein | phrog_3412 | unknown function | unknown function | 1 | 52715 | 53293 |
| NP_061506.1 | NC_002484_p10 | phage head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 6711 | 7067 |
| NP_061518.1 | NC_002484_p21 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 14256 | 14747 |
| NP_061529.1 | NC_002484_p33 | hypothetical protein | phrog_3580 | unknown function | unknown function | 1 | 26349 | 26609 |
| NP_061524.1 | NC_002484_p28 | O-antigen acetylase | phrog_6705 | O-antigen acetylase | moron, auxiliary metabolic gene and host takeover | 1 | 21282 | 23345 |
| NP_061537.1 | NC_002484_p42 | hypothetical protein | phrog_343 | unknown function | unknown function | -1 | 30192 | 30503 |
| NP_061528.1 | NC_002484_p32 | hypothetical protein | phrog_3774 | unknown function | unknown function | 1 | 25984 | 26352 |
| YP_009173785.1 | NC_002484_p47 | hypothetical protein | phrog_36542 | unknown function | unknown function | -1 | 32281 | 32499 |
| YP_009173783.1 | NC_002484_p44 | hypothetical protein | phrog_3230 | unknown function | unknown function | -1 | 30807 | 31301 |
| NP_061569.1 | NC_002484_p78 | replication protein O | phrog_5810 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 46919 | 47908 |
| NP_061581.1 | NC_002484_p90 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53535 | 53633 |
| NP_061579.1 | NC_002484_p88 | hypothetical protein | phrog_7514 | unknown function | unknown function | 1 | 52330 | 52647 |
| NP_061561.1 | NC_002484_p70 | hypothetical protein | phrog_3483 | unknown function | unknown function | -1 | 42415 | 42963 |
| NP_061554.1 | NC_002484_p62 | hypothetical protein | phrog_11137 | unknown function | unknown function | -1 | 39237 | 39407 |
| NP_061553.1 | NC_002484_p61 | hypothetical protein | phrog_4029 | unknown function | unknown function | -1 | 38636 | 39244 |
| NP_061573.1 | NC_002484_p82 | DksA-like zinc finger domain containing protein | phrog_54 | DksA-like zinc-finger protein | other | 1 | 49872 | 50075 |
| YP_009173787.1 | NC_002484_p50 | hypothetical protein | phrog_6604 | unknown function | unknown function | -1 | 33911 | 34114 |
| NP_061566.1 | NC_002484_p75 | Cro protein | phrog_35 | transcriptional repressor | transcription regulation | 1 | 46128 | 46349 |
| NP_061564.2 | NC_002484_p73 | hypothetical protein | phrog_4245 | unknown function | unknown function | -1 | 44080 | 44640 |
| NP_061513.1 | NC_002484_p17 | hypothetical protein | phrog_1749 | tail assembly chaperone | tail | 1 | 10605 | 10964 |
| NP_061540.1 | NC_002484_p48 | hypothetical protein | phrog_3956 | unknown function | unknown function | -1 | 32492 | 33772 |
| NP_061584.1 | NC_002484_p93 | hypothetical protein | phrog_217 | holin | lysis | 1 | 54638 | 54922 |
| NP_061545.2 | NC_002484_p53 | hypothetical protein | phrog_14444 | unknown function | unknown function | -1 | 34611 | 34769 |
| YP_009173788.1 | NC_002484_p67 | hypothetical protein | phrog_13613 | unknown function | unknown function | -1 | 41083 | 41355 |
| NP_061567.1 | NC_002484_p76 | CII protein | phrog_725 | CII-like regulator | transcription regulation | 1 | 46351 | 46659 |
| YP_009173789.1 | NC_002484_p68 | hypothetical protein | phrog_4887 | unknown function | unknown function | -1 | 41355 | 41630 |
| NP_061535.1 | NC_002484_p39 | hypothetical protein | phrog_5086 | unknown function | unknown function | -1 | 28979 | 29305 |
| NP_061510.1 | NC_002484_p14 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 9136 | 9630 |
| NP_061575.1 | NC_002484_p84 | hypothetical protein | phrog_319 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 50690 | 51277 |
| NP_061549.1 | NC_002484_p57 | hypothetical protein | phrog_1376 | unknown function | unknown function | -1 | 36503 | 37567 |
| NP_061530.2 | NC_002484_p34 | hypothetical protein | phrog_3944 | unknown function | unknown function | 1 | 26645 | 26908 |
| NP_061536.1 | NC_002484_p40 | hypothetical protein | phrog_4029 | unknown function | unknown function | -1 | 29302 | 29991 |
| NP_061562.1 | NC_002484_p71 | hypothetical protein | phrog_4801 | unknown function | unknown function | -1 | 42960 | 43385 |
| YP_009173786.1 | NC_002484_p49 | hypothetical protein | phrog_16171 | unknown function | unknown function | -1 | 33769 | 33939 |
| NP_061588.1 | NC_002484_p97 | hypothetical protein | phrog_9003 | unknown function | unknown function | 1 | 55434 | 55685 |
| YP_009173777.1 | NC_002484_p12 | hypothetical protein | phrog_6804 | unknown function | unknown function | 1 | 7748 | 8575 |
| NP_061587.1 | NC_002484_p96 | hypothetical protein | phrog_2612 | unknown function | unknown function | 1 | 55273 | 55434 |
| NP_061571.1 | NC_002484_p80 | hypothetical protein | phrog_8532 | unknown function | unknown function | 1 | 49245 | 49364 |
| YP_009173776.1 | NC_002484_p8 | hypothetical protein | phrog_4603 | alpha-2;3-sialyltransferase | other | 1 | 5951 | 6409 |
| NP_061550.2 | NC_002484_p58 | hypothetical protein | phrog_5086 | unknown function | unknown function | -1 | 37749 | 38093 |
| NP_061499.1 | NC_002484_p3 | hypothetical protein | phrog_4810 | unknown function | unknown function | 1 | 2107 | 2271 |
| YP_009173782.1 | NC_002484_p43 | hypothetical protein | phrog_5315 | unknown function | unknown function | -1 | 30488 | 30634 |
| NP_061526.2 | NC_002484_p30 | hypothetical protein | phrog_3377 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 24743 | 25351 |
| NP_061563.1 | NC_002484_p72 | hypothetical protein | phrog_25727 | unknown function | unknown function | -1 | 43628 | 43921 |
| NP_061514.2 | NC_002484_p18 | hypothetical protein | phrog_337 | tail protein | tail | 1 | 10982 | 11242 |
| NP_061527.1 | NC_002484_p31 | endolysin | phrog_90 | endolysin | lysis | 1 | 25505 | 25987 |
| NP_061565.1 | NC_002484_p74 | cI repressor protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 45369 | 46040 |
| YP_009173780.1 | NC_002484_p27 | inhibitor of alpha-polymerase | phrog_34981 | unknown function | unknown function | -1 | 21004 | 21099 |
| NP_061585.1 | NC_002484_p94 | hypothetical protein | phrog_1046 | unknown function | unknown function | 1 | 54922 | 55155 |
| NP_061557.1 | NC_002484_p65 | Lar family protein | phrog_3592 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | -1 | 40161 | 40430 |
| NP_061533.1 | NC_002484_p37 | hypothetical protein | phrog_38549 | unknown function | unknown function | -1 | 28588 | 28749 |
| YP_009173779.1 | NC_002484_p19 | tail tape measure protein | phrog_2854 | tail length tape measure protein | tail | 1 | 11292 | 13796 |
| NP_061560.1 | NC_002484_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41630 | 42418 |
| NP_061578.1 | NC_002484_p87 | NinG protein | phrog_171 | NinG/ Rap DNA junction specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 51689 | 52330 |
| NP_061497.1 | NC_002484_p1 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 37 | 417 |
| NP_061502.1 | NC_002484_p6 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4459 | 5646 |
| YP_009173775.1 | NC_002484_p7 | hypothetical protein | phrog_7993 | unknown function | unknown function | 1 | 5691 | 5978 |
| YP_009173781.1 | NC_002484_p41 | transcriptional regulator | phrog_2440 | transcriptional regulator | transcription regulation | -1 | 29988 | 30191 |
| NP_061547.1 | NC_002484_p55 | exonuclease | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 35112 | 35738 |
| NP_061568.1 | NC_002484_p77 | hypothetical protein | phrog_6111 | unknown function | unknown function | 1 | 46659 | 46922 |
| YP_009173778.1 | NC_002484_p13 | hypothetical protein | phrog_6564 | methyltransferase | other | 1 | 8526 | 9143 |
| NP_061511.1 | NC_002484_p15 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 9633 | 9998 |
| NP_061570.1 | NC_002484_p79 | replicative DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 47905 | 49245 |
| NP_061543.1 | NC_002484_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34135 | 34266 |
| NP_061577.1 | NC_002484_p86 | hypothetical protein | phrog_37266 | unknown function | unknown function | 1 | 51579 | 51692 |
| NP_061500.1 | NC_002484_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2264 | 3568 |
| NP_061551.1 | NC_002484_p59 | hypothetical protein | phrog_6457 | unknown function | unknown function | -1 | 38086 | 38268 |
| NP_061558.1 | NC_002484_p66 | hypothetical protein | phrog_3592 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | -1 | 40423 | 41079 |
| YP_009173784.1 | NC_002484_p46 | hypothetical protein | phrog_3592 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | -1 | 31634 | 32284 |