Genomic map of Staphylococcus prophage phiPV83 (NC_002486)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_002486
Definition
Staphylococcus prophage phiPV83, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Biseptimavirus; unclassified Biseptimavirus.
DB of origin
REFSEQ
Length
45636
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
65
%GC
33.47
Number of singletons
1
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_061627.1 NC_002486_p39 phi PVL ORF 1 homologue phrog_83 terminase small subunit head and packaging 1 16816 17283
NP_061622.1 NC_002486_p34 phi PVL ORF 57 / phi 11 RinB homologue phrog_152 RinB-like transcriptional activator transcription regulation 1 14926 15075
NP_061645.1 NC_002486_p57 phi PVL ORF 22 homologue phrog_1747 unknown function unknown function 1 37729 38016
NP_061602.1 NC_002486_p12 hypothetical protein phrog_989 unknown function unknown function 1 6179 6400
NP_061626.1 NC_002486_p38 phi PVL ORF 63 homologue phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 16333 16686
NP_061641.1 NC_002486_p53 phi PVL ORF 17 homologue phrog_8537 unknown function unknown function 1 31578 32249
NP_597920.1 NC_002486_p31 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 14053 14289
NP_061638.1 NC_002486_p50 phi PVL ORF 13 homologue singleton unknown function unknown function 1 25897 26298
NP_061624.1 NC_002486_p36 phi PVL ORF 61 homologue phrog_1058 unknown function unknown function 1 15298 15759
NP_061629.1 NC_002486_p41 phi PVL ORF 3 homologue phrog_1142 unknown function unknown function 1 18994 19194
NP_061644.1 NC_002486_p56 hypothetical protein phrog_1399 unknown function unknown function 1 37530 37682
NP_061625.1 NC_002486_p37 phi PVL ORF 62 homologue phrog_229 MazG-like pyrophosphatase other 1 15874 16326
NP_061605.1 NC_002486_p15 phi PVL ORF 39 homologue phrog_401 unknown function unknown function 1 6975 7235
NP_061637.1 NC_002486_p49 phi PVL ORF 12 homologue phrog_78 tail terminator connector 1 25516 25896
NP_061646.1 NC_002486_p58 phi PVL ORF 17 homologue phrog_276 unknown function unknown function 1 38074 38370
NP_061621.1 NC_002486_p33 hypothetical protein phrog_301 secreted protein other 1 14534 14926
NP_061597.1 NC_002486_p7 hypothetical protein phrog_847 anti-repressor Ant transcription regulation 1 4057 4500
NP_061640.1 NC_002486_p52 phi PVL ORF 15 and 16 homologue phrog_167 tail length tape measure protein tail 1 27601 31542
NP_061611.1 NC_002486_p21 hypothetical protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 10289 11062
NP_061604.1 NC_002486_p14 hypothetical protein phrog_9362 unknown function unknown function 1 6561 6881
NP_061618.1 NC_002486_p29 phi PVL ORF 52 homologue phrog_266 unknown function unknown function 1 13239 13487
NP_061593.1 NC_002486_p3 hypothetical protein phrog_1776 unknown function unknown function -1 2098 2547
NP_061591.2 NC_002486_p1 integrase phrog_1 integrase integration and excision -1 94 1139
NP_061630.1 NC_002486_p42 hypothetical protein phrog_12 portal protein head and packaging 1 19200 19955
NP_061620.1 NC_002486_p32 hypothetical protein phrog_555 unknown function unknown function 1 14314 14550
NP_061612.1 NC_002486_p23 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 11463 11867
NP_061608.1 NC_002486_p18 single strand DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 8367 8795
NP_061599.1 NC_002486_p9 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 4913 5710
NP_061647.1 NC_002486_p59 holin phrog_297 holin lysis 1 38909 39163
NP_061634.1 NC_002486_p46 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 22564 22905
NP_061601.1 NC_002486_p11 hypothetical protein phrog_2222 unknown function unknown function -1 5877 6107
NP_061614.1 NC_002486_p25 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 12058 12315
NP_061594.1 NC_002486_p4 hypothetical protein phrog_5192 unknown function unknown function -1 2583 2768
NP_061649.1 NC_002486_p61 LukM precursor phrog_965 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 40278 41204
NP_061616.1 NC_002486_p27 phi PVL ORF 51 homologue phrog_258 virulence associated other 1 12699 12947
NP_061648.1 NC_002486_p60 lytic enzyme (N-acetylmuramyl-Lalanine amidase) phrog_635 endolysin lysis 1 39175 39930
NP_061596.1 NC_002486_p6 Cro phrog_3 transcriptional repressor transcription regulation 1 3805 4044
NP_061613.1 NC_002486_p24 hypothetical protein phrog_299 unknown function unknown function 1 11872 12057
NP_061652.1 NC_002486_p64 hypothetical protein phrog_17999 unknown function unknown function 1 43137 44309
NP_061595.1 NC_002486_p5 repressor phrog_4 transcriptional repressor transcription regulation -1 2923 3633
NP_061642.1 NC_002486_p54 phi PVL ORF 18 and 19 homologue phrog_202 distal tail protein Dit tail 1 32249 33739
NP_061607.1 NC_002486_p17 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7729 8367
NP_061609.1 NC_002486_p19 hypothetical protein phrog_398 unknown function unknown function 1 8809 9504
NP_061650.1 NC_002486_p62 LukF-PV(P83) precursor phrog_965 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 41206 42174
NP_061606.1 NC_002486_p16 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 7250 7729
NP_597919.1 NC_002486_p22 hypothetical protein phrog_433 unknown function unknown function 1 11225 11452
NP_061600.1 NC_002486_p10 hypothetical protein phrog_2312 unknown function unknown function 1 5726 5902
NP_061653.1 NC_002486_p65 transposase phrog_4646 transposase integration and excision -1 44552 45538
NP_061592.1 NC_002486_p2 phi PVL ORF 30 homologue phrog_716 Na/K ATPase other 1 1252 1866
NP_061643.1 NC_002486_p55 phi PVL ORF 20 and 21 homologue phrog_1786 minor head protein head and packaging 1 33755 37540
NP_061632.1 NC_002486_p44 phi PVL ORF 7 homologue phrog_10 major head protein head and packaging 1 21114 22361
NP_061639.1 NC_002486_p51 phi PVL ORF 14 homologue phrog_187 head-tail adaptor connector 1 26916 27362
NP_061636.1 NC_002486_p48 phi PVL ORF 11 homologue phrog_5 tail completion or Neck1 protein connector 1 25142 25519
NP_061623.1 NC_002486_p35 phi PVL ORF 60 homologue phrog_386 unknown function unknown function 1 15075 15275
NP_061631.1 NC_002486_p43 hypothetical protein phrog_80 head maturation protease head and packaging 1 20442 21026
NP_061598.1 NC_002486_p8 hypothetical protein phrog_1263 unknown function unknown function 1 4515 4655
NP_061619.1 NC_002486_p30 hypothetical protein phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 13480 14016
NP_061615.1 NC_002486_p26 phi PVL ORF 50 phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 12327 12698
NP_061635.1 NC_002486_p47 transposase phrog_8928 unknown function unknown function 1 23170 24816
NP_061651.1 NC_002486_p63 hypothetical protein phrog_18546 unknown function unknown function 1 42704 43123
NP_061603.1 NC_002486_p13 phi PVL ORF 38 homologue phrog_369 unknown function unknown function 1 6393 6560
NP_061628.1 NC_002486_p40 phi PVL ORF 2 homologue phrog_9 terminase large subunit head and packaging 1 17286 18980
NP_061610.1 NC_002486_p20 hypothetical protein phrog_1163 unknown function unknown function 1 9476 10279
NP_061633.1 NC_002486_p45 phi PVL ORF 8 homologue phrog_933 unknown function unknown function 1 22397 22555
NP_061617.1 NC_002486_p28 hypothetical protein phrog_1034 unknown function unknown function 1 12956 13246