| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_002519 |
Definition |
Roseophage SIO1 complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
39898 |
Host Name |
Roseobacter |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
32 |
%GC |
46.16 |
Number of singletons |
11 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_064746.1 | NC_002519_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7891 | 8202 |
| NP_064756.1 | NC_002519_p19 | RP Endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 19118 | 19522 |
| NP_064743.1 | NC_002519_p6 | gp5.1 | singleton | unknown function | unknown function | -1 | 4688 | 5254 |
| NP_064755.1 | NC_002519_p18 | hypothetical protein | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | 1 | 18265 | 19128 |
| NP_064745.1 | NC_002519_p8 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6348 | 7970 |
| NP_064744.1 | NC_002519_p7 | hypothetical protein | singleton | unknown function | unknown function | -1 | 5663 | 6412 |
| NP_064757.1 | NC_002519_p20 | hypothetical protein | phrog_229 | MazG-like pyrophosphatase | other | 1 | 19765 | 19998 |
| NP_064760.1 | NC_002519_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25069 | 25671 |
| NP_064754.1 | NC_002519_p17 | hypothetical protein | phrog_37869 | unknown function | unknown function | 1 | 17261 | 17839 |
| NP_064742.1 | NC_002519_p5 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | -1 | 3161 | 4222 |
| NP_064752.1 | NC_002519_p15 | RPprimase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 13372 | 14940 |
| NP_064759.1 | NC_002519_p22 | hypothetical protein | phrog_30566 | unknown function | unknown function | -1 | 24559 | 24897 |
| NP_064766.1 | NC_002519_p29 | hypothetical protein | phrog_8094 | tail appendage | tail | -1 | 33703 | 35850 |
| NP_064739.1 | NC_002519_p2 | hypothetical protein | phrog_20726 | unknown function | unknown function | 1 | 778 | 1521 |
| NP_064758.1 | NC_002519_p21 | RP ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 20174 | 22189 |
| NP_064761.1 | NC_002519_p24 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25671 | 26414 |
| NP_064767.1 | NC_002519_p30 | hypothetical protein | phrog_7592 | tail protein | tail | -1 | 36123 | 36743 |
| NP_064764.1 | NC_002519_p27 | gp26.1 | phrog_8168 | unknown function | unknown function | -1 | 32831 | 33265 |
| NP_064763.1 | NC_002519_p26 | hypothetical protein | phrog_38076 | unknown function | unknown function | -1 | 28362 | 32816 |
| NP_064769.1 | NC_002519_p32 | hypothetical protein | phrog_7931 | unknown function | unknown function | -1 | 38518 | 39285 |
| NP_064753.1 | NC_002519_p16 | RP DNA pol | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 15502 | 17244 |
| NP_064740.1 | NC_002519_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1581 | 2429 |
| NP_064747.1 | NC_002519_p10 | hypothetical protein | phrog_3842 | unknown function | unknown function | 1 | 9486 | 10076 |
| NP_064749.1 | NC_002519_p12 | RP thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 10980 | 11648 |
| NP_064768.1 | NC_002519_p31 | hypothetical protein | phrog_38624 | unknown function | unknown function | -1 | 36874 | 37446 |
| NP_064751.1 | NC_002519_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12234 | 12602 |
| NP_064750.1 | NC_002519_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11615 | 11959 |
| NP_064748.1 | NC_002519_p11 | hypothetical protein | phrog_4973 | unknown function | unknown function | 1 | 10100 | 10528 |
| NP_064741.1 | NC_002519_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2531 | 3346 |
| NP_064738.1 | NC_002519_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 441 | 851 |
| NP_064762.1 | NC_002519_p25 | hypothetical protein | phrog_37630 | unknown function | unknown function | -1 | 26602 | 28296 |
| NP_064765.1 | NC_002519_p28 | gp26.2 | phrog_1249 | acetyltransferase | other | -1 | 33267 | 33728 |