| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_002649 |
Definition |
Bacillus phage GA-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Picovirinae; Salasvirus. |
DB of origin |
REFSEQ |
Length |
21129 |
Host Name |
Bacillus sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
35 |
%GC |
34.65 |
Number of singletons |
18 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_073678.1 | NC_002649_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 558 | 647 |
| NP_073700.1 | NC_002649_p24 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17624 | 17815 |
| NP_073698.1 | NC_002649_p22 | peptidoglycan hydrolase | phrog_2742 | endolysin | lysis | 1 | 15858 | 16577 |
| NP_073699.1 | NC_002649_p23 | DNA encapsidation protein | phrog_2150 | terminase | head and packaging | 1 | 16590 | 17600 |
| NP_073705.1 | NC_002649_p29 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18890 | 19240 |
| NP_073691.1 | NC_002649_p15 | major head protein | phrog_2006 | major head protein | head and packaging | 1 | 7137 | 8555 |
| NP_073690.1 | NC_002649_p14 | scaffolding protein | phrog_10439 | head scaffolding protein | head and packaging | 1 | 6789 | 7112 |
| NP_073693.1 | NC_002649_p17 | upper collar protein | phrog_2038 | upper collar connector | connector | 1 | 10414 | 11334 |
| NP_073710.1 | NC_002649_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 20370 | 20687 |
| NP_073697.1 | NC_002649_p21 | holin | phrog_199 | holin | lysis | 1 | 15464 | 15865 |
| NP_073687.1 | NC_002649_p11 | transcriptional regulator | phrog_10365 | late transcriptional activator | transcription regulation | -1 | 5197 | 5601 |
| NP_073681.1 | NC_002649_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1372 | 1542 |
| NP_073684.1 | NC_002649_p8 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2282 | 2674 |
| NP_073701.1 | NC_002649_p25 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17802 | 17948 |
| NP_073704.1 | NC_002649_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18588 | 18836 |
| NP_073677.1 | NC_002649_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 193 | 519 |
| NP_073711.1 | NC_002649_p35 | phi29 gene 17 homologue | singleton | unknown function | unknown function | -1 | 20680 | 20943 |
| NP_073707.1 | NC_002649_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19409 | 19723 |
| NP_073709.1 | NC_002649_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 20028 | 20312 |
| NP_073694.1 | NC_002649_p18 | lower collar protein | phrog_3225 | adaptor Ad4 | connector | 1 | 11279 | 12142 |
| NP_073702.1 | NC_002649_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17945 | 18187 |
| NP_073680.1 | NC_002649_p4 | hypothetical protein | phrog_23240 | unknown function | unknown function | -1 | 947 | 1372 |
| NP_073686.1 | NC_002649_p10 | terminal protein | phrog_6358 | DNA terminal protein | DNA, RNA and nucleotide metabolism | -1 | 4529 | 5326 |
| NP_073695.1 | NC_002649_p19 | neck appendage protein precursor | phrog_7121 | tail fiber protein | tail | 1 | 12157 | 14379 |
| NP_073688.1 | NC_002649_p12 | SSB | phrog_6243 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 5613 | 6125 |
| NP_073679.1 | NC_002649_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 640 | 963 |
| NP_073696.1 | NC_002649_p20 | morphogenesis protein | phrog_11037 | unknown function | unknown function | 1 | 14381 | 15448 |
| NP_073685.1 | NC_002649_p9 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 2765 | 4501 |
| NP_073683.1 | NC_002649_p7 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2180 | 2281 |
| NP_073703.1 | NC_002649_p27 | 16.7 protein homologue (phi29) | phrog_6682 | GP16.7-like replication protein | DNA, RNA and nucleotide metabolism | -1 | 18190 | 18591 |
| NP_073708.1 | NC_002649_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19717 | 20022 |
| NP_073692.1 | NC_002649_p16 | tail protein | phrog_2248 | tail protein | tail | 1 | 8574 | 10412 |
| NP_073689.1 | NC_002649_p13 | dsDNA binding protein | phrog_6370 | dsDNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 6230 | 6511 |
| NP_073682.1 | NC_002649_p6 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1896 | 2180 |
| NP_073706.1 | NC_002649_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19318 | 19395 |