Genomic map of Mycobacterium virus Bxb1 (NC_002656)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_002656
Definition
Mycobacterium phage Bxb1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus.
DB of origin
REFSEQ
Length
50550
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
86
%GC
63.64
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_075330.1 NC_002656_p63 11.9 kD hypothetical protein phrog_21484 unknown function unknown function -1 42422 42727
NP_075327.1 NC_002656_p60 11.8 kD hypothetical protein phrog_2184 unknown function unknown function -1 41064 41381
NP_075274.1 NC_002656_p7 related to TM4(29%) phrog_747 unknown function unknown function 1 4363 4620
NP_075294.1 NC_002656_p27 12.5 kD hypothetical protein phrog_981 minor tail protein tail 1 23468 23815
NP_075336.1 NC_002656_p69 related to L5(45%) phrog_357 transcriptional repressor transcription regulation -1 44250 44762
NP_075353.1 NC_002656_p86 6.8 kD hypothetical protein phrog_3574 unknown function unknown function 1 49573 49761
NP_075343.1 NC_002656_p76 4.5 kD hypothetical protein phrog_2093 unknown function unknown function -1 46298 46426
NP_075346.1 NC_002656_p79 6.6 kD hypothetical protein singleton unknown function unknown function -1 47029 47202
NP_075339.1 NC_002656_p72 9.9 kD hypothetical protein phrog_1720 unknown function unknown function -1 45480 45749
NP_075271.1 NC_002656_p4 related to L5(43% phrog_1197 tail protein tail 1 2291 3361
NP_075342.1 NC_002656_p75 5.7 kD hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 46134 46301
NP_075312.1 NC_002656_p45 related to D29(34%) phrog_354 sigma-K factor transcription regulation -1 35097 35882
NP_075270.1 NC_002656_p3 11.4 kD hypothetical protein phrog_2830 unknown function unknown function 1 1716 2027
NP_075298.1 NC_002656_p31 11.3 kD hypothetical protein phrog_644 unknown function unknown function 1 27613 27933
NP_075340.1 NC_002656_p73 8.0 kD hypothetical protein phrog_1387 unknown function unknown function -1 45746 45949
NP_075323.1 NC_002656_p56 related to TM4(54%) phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 39569 39835
NP_075319.1 NC_002656_p52 6.6 kD hypothetical protein phrog_1783 unknown function unknown function -1 38375 38542
NP_075285.1 NC_002656_p18 related to L5(52%) phrog_123 tail terminator connector 1 14194 14640
NP_075334.1 NC_002656_p67 11.2 kD hypothetical protein phrog_3851 unknown function unknown function -1 43502 43816
NP_075322.1 NC_002656_p55 13.2 kD hypothetical protein phrog_722 unknown function unknown function -1 39207 39572
NP_075325.1 NC_002656_p58 4.8 kD hypothetical protein phrog_1705 unknown function unknown function -1 40631 40777
NP_075301.1 NC_002656_p34 9.7 kD hypothetical protein phrog_411 unknown function unknown function 1 29055 29339
NP_075280.1 NC_002656_p13 related to L5(43%) phrog_233 head scaffolding protein head and packaging 1 11127 11624
NP_075332.1 NC_002656_p65 5.7 kD hypothetical protein phrog_20207 unknown function unknown function -1 42977 43126
NP_075307.1 NC_002656_p40 related to D29(51%) phrog_383 unknown function unknown function -1 31926 32285
NP_075341.1 NC_002656_p74 6.6 kD hypothetical protein phrog_1155 unknown function unknown function -1 45946 46134
NP_075316.1 NC_002656_p49 related to D29(48%) phrog_1167 phosphofructokinase other -1 36960 37514
NP_075349.1 NC_002656_p82 10.9 kD hypothetical protein phrog_5017 unknown function unknown function -1 48205 48504
NP_075350.1 NC_002656_p83 6.8 kD hypothetical protein phrog_5533 unknown function unknown function -1 48504 48689
NP_075324.1 NC_002656_p57 related to L5(55%) phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 39835 40644
NP_075304.1 NC_002656_p37 7.0 kD hypothetical protein phrog_2035 unknown function unknown function -1 31383 31562
NP_075272.1 NC_002656_p5 related to L5(31% phrog_553 minor tail protein tail 1 3371 4081
NP_075309.1 NC_002656_p42 6.5 kD hypothetical protein phrog_1781 unknown function unknown function -1 34169 34399
NP_075347.1 NC_002656_p80 9.1 kD hypothetical protein phrog_33114 unknown function unknown function -1 47359 47598
NP_075284.1 NC_002656_p17 related to L5(44%) phrog_321 tail completion or Neck1 protein connector 1 13795 14190
NP_075338.1 NC_002656_p71 6.6 kD hypothetical protein phrog_8497 unknown function unknown function -1 45316 45483
NP_075352.1 NC_002656_p85 5.6 kD hypothetical protein phrog_11620 unknown function unknown function 1 49109 49267
NP_075269.1 NC_002656_p2 related to L5(41%) phrog_226 minor tail protein tail 1 930 1370
NP_075302.1 NC_002656_p35 integrase phrog_95 integrase integration and excision 1 29491 30993
NP_075300.1 NC_002656_p33 24.7 kD hypothetical protein phrog_754 minor tail protein tail 1 28131 28934
NP_075290.1 NC_002656_p23 related to D29(residues 9-265, 50% phrog_106 minor tail protein tail 1 18927 20984
NP_075310.1 NC_002656_p43 related to L5(26%) phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 34430 34921
NP_075320.1 NC_002656_p53 related to L5(73%) phrog_397 unknown function unknown function -1 38530 38664
NP_075345.1 NC_002656_p78 13.2 kD hypothetical protein singleton unknown function unknown function -1 46641 47003
NP_075348.1 NC_002656_p81 5.4 kD hypothetical protein phrog_2985 unknown function unknown function -1 47773 47928
NP_075268.1 NC_002656_p1 related to L5(47%) phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 599 895
NP_075282.1 NC_002656_p15 related to L5(57%) phrog_137 head-tail adaptor Ad1 connector 1 12916 13293
NP_075314.1 NC_002656_p47 related to L5(57%) phrog_221 metallo-phosphoesterase other -1 36020 36787
NP_075279.1 NC_002656_p12 related to D29(46%) phrog_193 head maturation protease head and packaging 1 10182 11066
NP_075286.1 NC_002656_p19 related to L5(60%) phrog_117 major tail protein tail 1 14649 15500
NP_075331.1 NC_002656_p64 9.9 kD hypothetical protein phrog_21752 unknown function unknown function -1 42720 42980
NP_075293.1 NC_002656_p26 related to L5(46%) phrog_352 minor tail protein tail 1 23025 23471
NP_075273.1 NC_002656_p6 9.7 kD hypothetical protein phrog_1718 tail protein tail 1 4095 4355
NP_075291.1 NC_002656_p24 6.7 kD hypothetical protein phrog_1543 minor tail protein tail 1 21003 21185
NP_075317.1 NC_002656_p50 related to D29(62%) phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 37511 37984
NP_075277.1 NC_002656_p10 related to L5(65%) phrog_9 terminase large subunit head and packaging 1 7031 8719
NP_075308.1 NC_002656_p41 related to L5(54%) phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 32306 34132
NP_075306.1 NC_002656_p39 11.1 kD hypothetical protein phrog_1971 unknown function unknown function -1 31642 31929
NP_075333.1 NC_002656_p66 11.4 kD hypothetical protein phrog_1584 unknown function unknown function -1 43188 43505
NP_075292.1 NC_002656_p25 related to D29(62%) phrog_110 minor tail protein tail 1 21185 22987
NP_075278.1 NC_002656_p11 hypothetical protein phrog_104 portal protein head and packaging 1 8719 10185
NP_075318.1 NC_002656_p51 related to L5(40%) phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 37881 38396
NP_075281.1 NC_002656_p14 related to D29(72%) phrog_10 major head protein head and packaging 1 11657 12850
NP_075297.1 NC_002656_p30 54.9 kD carboxyeptidase phrog_382 minor tail protein with lysin activity tail 1 26030 27520
NP_075326.1 NC_002656_p59 related to D29(27%) phrog_520 unknown function unknown function -1 40774 41067
NP_075295.1 NC_002656_p28 12.9 kD hypothetical protein phrog_1397 unknown function unknown function 1 23812 24159
NP_075328.1 NC_002656_p61 7.0 kD hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 41378 41569
NP_075311.1 NC_002656_p44 related to D29(51%) phrog_499 unknown function unknown function -1 34918 35100
NP_075289.1 NC_002656_p22 related to L5(24%) phrog_305 tail length tape measure protein tail 1 16432 18903
NP_075303.1 NC_002656_p36 10.4 kD hypothetical protein phrog_1966 unknown function unknown function -1 31114 31386
NP_075351.1 NC_002656_p84 related to L5(76%) phrog_828 unknown function unknown function 1 48903 49112
NP_075275.1 NC_002656_p8 related to D29 gp10 phrog_317 endolysin lysis 1 4620 6053
NP_075276.1 NC_002656_p9 related to L5(38%) phrog_102 endolysin lysis 1 6043 7011
NP_075299.1 NC_002656_p32 6.8 kD hypothetical protein phrog_1560 unknown function unknown function 1 27943 28134
NP_075335.1 NC_002656_p68 related to D29(34%) phrog_1809 unknown function unknown function -1 43813 44208
NP_075283.1 NC_002656_p16 related to D29(48%) phrog_320 head closure Hc1 connector 1 13415 13795
NP_075287.1 NC_002656_p20 related to L5(32%) phrog_393 tail assembly chaperone tail 1 15621 16420
NP_075329.1 NC_002656_p62 related to D29(53%) phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 41593 42480
NP_075321.1 NC_002656_p54 related to L5(59%) phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 38661 39137
NP_075337.1 NC_002656_p70 related to L5(47%) phrog_439 site-specific recombination directionality factor RDF integration and excision -1 45024 45323
NP_075313.1 NC_002656_p46 related to D29 gp53.1 (60%) phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 35875 36015
NP_075305.1 NC_002656_p38 4.0 kD hypothetical protein phrog_1860 unknown function unknown function -1 31550 31645
NP_075315.1 NC_002656_p48 6.2 kD hypothetical protein phrog_1503 unknown function unknown function -1 36784 36963
NP_075344.1 NC_002656_p77 5.3 kD hypothetical protein phrog_932 unknown function unknown function -1 46447 46596
NP_075288.1 NC_002656_p21 related to D29(32%) phrog_330 tail assembly chaperone tail 1 15621 15998
NP_075296.1 NC_002656_p29 related to D29(38%) phrog_346 minor tail protein tail 1 24184 26037