| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_002656 |
Definition |
Mycobacterium phage Bxb1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
50550 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
86 |
%GC |
63.64 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_075330.1 | NC_002656_p63 | 11.9 kD hypothetical protein | phrog_21484 | unknown function | unknown function | -1 | 42422 | 42727 |
| NP_075327.1 | NC_002656_p60 | 11.8 kD hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 41064 | 41381 |
| NP_075274.1 | NC_002656_p7 | related to TM4(29%) | phrog_747 | unknown function | unknown function | 1 | 4363 | 4620 |
| NP_075294.1 | NC_002656_p27 | 12.5 kD hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23468 | 23815 |
| NP_075336.1 | NC_002656_p69 | related to L5(45%) | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44250 | 44762 |
| NP_075353.1 | NC_002656_p86 | 6.8 kD hypothetical protein | phrog_3574 | unknown function | unknown function | 1 | 49573 | 49761 |
| NP_075343.1 | NC_002656_p76 | 4.5 kD hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 46298 | 46426 |
| NP_075346.1 | NC_002656_p79 | 6.6 kD hypothetical protein | singleton | unknown function | unknown function | -1 | 47029 | 47202 |
| NP_075339.1 | NC_002656_p72 | 9.9 kD hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 45480 | 45749 |
| NP_075271.1 | NC_002656_p4 | related to L5(43% | phrog_1197 | tail protein | tail | 1 | 2291 | 3361 |
| NP_075342.1 | NC_002656_p75 | 5.7 kD hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46134 | 46301 |
| NP_075312.1 | NC_002656_p45 | related to D29(34%) | phrog_354 | sigma-K factor | transcription regulation | -1 | 35097 | 35882 |
| NP_075270.1 | NC_002656_p3 | 11.4 kD hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1716 | 2027 |
| NP_075298.1 | NC_002656_p31 | 11.3 kD hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27613 | 27933 |
| NP_075340.1 | NC_002656_p73 | 8.0 kD hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 45746 | 45949 |
| NP_075323.1 | NC_002656_p56 | related to TM4(54%) | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 39569 | 39835 |
| NP_075319.1 | NC_002656_p52 | 6.6 kD hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 38375 | 38542 |
| NP_075285.1 | NC_002656_p18 | related to L5(52%) | phrog_123 | tail terminator | connector | 1 | 14194 | 14640 |
| NP_075334.1 | NC_002656_p67 | 11.2 kD hypothetical protein | phrog_3851 | unknown function | unknown function | -1 | 43502 | 43816 |
| NP_075322.1 | NC_002656_p55 | 13.2 kD hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 39207 | 39572 |
| NP_075325.1 | NC_002656_p58 | 4.8 kD hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 40631 | 40777 |
| NP_075301.1 | NC_002656_p34 | 9.7 kD hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29055 | 29339 |
| NP_075280.1 | NC_002656_p13 | related to L5(43%) | phrog_233 | head scaffolding protein | head and packaging | 1 | 11127 | 11624 |
| NP_075332.1 | NC_002656_p65 | 5.7 kD hypothetical protein | phrog_20207 | unknown function | unknown function | -1 | 42977 | 43126 |
| NP_075307.1 | NC_002656_p40 | related to D29(51%) | phrog_383 | unknown function | unknown function | -1 | 31926 | 32285 |
| NP_075341.1 | NC_002656_p74 | 6.6 kD hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 45946 | 46134 |
| NP_075316.1 | NC_002656_p49 | related to D29(48%) | phrog_1167 | phosphofructokinase | other | -1 | 36960 | 37514 |
| NP_075349.1 | NC_002656_p82 | 10.9 kD hypothetical protein | phrog_5017 | unknown function | unknown function | -1 | 48205 | 48504 |
| NP_075350.1 | NC_002656_p83 | 6.8 kD hypothetical protein | phrog_5533 | unknown function | unknown function | -1 | 48504 | 48689 |
| NP_075324.1 | NC_002656_p57 | related to L5(55%) | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 39835 | 40644 |
| NP_075304.1 | NC_002656_p37 | 7.0 kD hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31383 | 31562 |
| NP_075272.1 | NC_002656_p5 | related to L5(31% | phrog_553 | minor tail protein | tail | 1 | 3371 | 4081 |
| NP_075309.1 | NC_002656_p42 | 6.5 kD hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34169 | 34399 |
| NP_075347.1 | NC_002656_p80 | 9.1 kD hypothetical protein | phrog_33114 | unknown function | unknown function | -1 | 47359 | 47598 |
| NP_075284.1 | NC_002656_p17 | related to L5(44%) | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13795 | 14190 |
| NP_075338.1 | NC_002656_p71 | 6.6 kD hypothetical protein | phrog_8497 | unknown function | unknown function | -1 | 45316 | 45483 |
| NP_075352.1 | NC_002656_p85 | 5.6 kD hypothetical protein | phrog_11620 | unknown function | unknown function | 1 | 49109 | 49267 |
| NP_075269.1 | NC_002656_p2 | related to L5(41%) | phrog_226 | minor tail protein | tail | 1 | 930 | 1370 |
| NP_075302.1 | NC_002656_p35 | integrase | phrog_95 | integrase | integration and excision | 1 | 29491 | 30993 |
| NP_075300.1 | NC_002656_p33 | 24.7 kD hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28131 | 28934 |
| NP_075290.1 | NC_002656_p23 | related to D29(residues 9-265, 50% | phrog_106 | minor tail protein | tail | 1 | 18927 | 20984 |
| NP_075310.1 | NC_002656_p43 | related to L5(26%) | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34430 | 34921 |
| NP_075320.1 | NC_002656_p53 | related to L5(73%) | phrog_397 | unknown function | unknown function | -1 | 38530 | 38664 |
| NP_075345.1 | NC_002656_p78 | 13.2 kD hypothetical protein | singleton | unknown function | unknown function | -1 | 46641 | 47003 |
| NP_075348.1 | NC_002656_p81 | 5.4 kD hypothetical protein | phrog_2985 | unknown function | unknown function | -1 | 47773 | 47928 |
| NP_075268.1 | NC_002656_p1 | related to L5(47%) | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 599 | 895 |
| NP_075282.1 | NC_002656_p15 | related to L5(57%) | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12916 | 13293 |
| NP_075314.1 | NC_002656_p47 | related to L5(57%) | phrog_221 | metallo-phosphoesterase | other | -1 | 36020 | 36787 |
| NP_075279.1 | NC_002656_p12 | related to D29(46%) | phrog_193 | head maturation protease | head and packaging | 1 | 10182 | 11066 |
| NP_075286.1 | NC_002656_p19 | related to L5(60%) | phrog_117 | major tail protein | tail | 1 | 14649 | 15500 |
| NP_075331.1 | NC_002656_p64 | 9.9 kD hypothetical protein | phrog_21752 | unknown function | unknown function | -1 | 42720 | 42980 |
| NP_075293.1 | NC_002656_p26 | related to L5(46%) | phrog_352 | minor tail protein | tail | 1 | 23025 | 23471 |
| NP_075273.1 | NC_002656_p6 | 9.7 kD hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4095 | 4355 |
| NP_075291.1 | NC_002656_p24 | 6.7 kD hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21003 | 21185 |
| NP_075317.1 | NC_002656_p50 | related to D29(62%) | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37511 | 37984 |
| NP_075277.1 | NC_002656_p10 | related to L5(65%) | phrog_9 | terminase large subunit | head and packaging | 1 | 7031 | 8719 |
| NP_075308.1 | NC_002656_p41 | related to L5(54%) | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32306 | 34132 |
| NP_075306.1 | NC_002656_p39 | 11.1 kD hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31642 | 31929 |
| NP_075333.1 | NC_002656_p66 | 11.4 kD hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 43188 | 43505 |
| NP_075292.1 | NC_002656_p25 | related to D29(62%) | phrog_110 | minor tail protein | tail | 1 | 21185 | 22987 |
| NP_075278.1 | NC_002656_p11 | hypothetical protein | phrog_104 | portal protein | head and packaging | 1 | 8719 | 10185 |
| NP_075318.1 | NC_002656_p51 | related to L5(40%) | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37881 | 38396 |
| NP_075281.1 | NC_002656_p14 | related to D29(72%) | phrog_10 | major head protein | head and packaging | 1 | 11657 | 12850 |
| NP_075297.1 | NC_002656_p30 | 54.9 kD carboxyeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26030 | 27520 |
| NP_075326.1 | NC_002656_p59 | related to D29(27%) | phrog_520 | unknown function | unknown function | -1 | 40774 | 41067 |
| NP_075295.1 | NC_002656_p28 | 12.9 kD hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 23812 | 24159 |
| NP_075328.1 | NC_002656_p61 | 7.0 kD hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 41378 | 41569 |
| NP_075311.1 | NC_002656_p44 | related to D29(51%) | phrog_499 | unknown function | unknown function | -1 | 34918 | 35100 |
| NP_075289.1 | NC_002656_p22 | related to L5(24%) | phrog_305 | tail length tape measure protein | tail | 1 | 16432 | 18903 |
| NP_075303.1 | NC_002656_p36 | 10.4 kD hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31114 | 31386 |
| NP_075351.1 | NC_002656_p84 | related to L5(76%) | phrog_828 | unknown function | unknown function | 1 | 48903 | 49112 |
| NP_075275.1 | NC_002656_p8 | related to D29 gp10 | phrog_317 | endolysin | lysis | 1 | 4620 | 6053 |
| NP_075276.1 | NC_002656_p9 | related to L5(38%) | phrog_102 | endolysin | lysis | 1 | 6043 | 7011 |
| NP_075299.1 | NC_002656_p32 | 6.8 kD hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 27943 | 28134 |
| NP_075335.1 | NC_002656_p68 | related to D29(34%) | phrog_1809 | unknown function | unknown function | -1 | 43813 | 44208 |
| NP_075283.1 | NC_002656_p16 | related to D29(48%) | phrog_320 | head closure Hc1 | connector | 1 | 13415 | 13795 |
| NP_075287.1 | NC_002656_p20 | related to L5(32%) | phrog_393 | tail assembly chaperone | tail | 1 | 15621 | 16420 |
| NP_075329.1 | NC_002656_p62 | related to D29(53%) | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 41593 | 42480 |
| NP_075321.1 | NC_002656_p54 | related to L5(59%) | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 38661 | 39137 |
| NP_075337.1 | NC_002656_p70 | related to L5(47%) | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 45024 | 45323 |
| NP_075313.1 | NC_002656_p46 | related to D29 gp53.1 (60%) | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 35875 | 36015 |
| NP_075305.1 | NC_002656_p38 | 4.0 kD hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31550 | 31645 |
| NP_075315.1 | NC_002656_p48 | 6.2 kD hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 36784 | 36963 |
| NP_075344.1 | NC_002656_p77 | 5.3 kD hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 46447 | 46596 |
| NP_075288.1 | NC_002656_p21 | related to D29(32%) | phrog_330 | tail assembly chaperone | tail | 1 | 15621 | 15998 |
| NP_075296.1 | NC_002656_p29 | related to D29(38%) | phrog_346 | minor tail protein | tail | 1 | 24184 | 26037 |