Genomic map of Staphylococcus virus phiSLT (NC_002661)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_002661
Definition
Staphylococcus phage phiSLT, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Triavirus.
DB of origin
REFSEQ
Length
42942
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
61
%GC
33.31
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_075510.1 NC_002661_p48 major tail protein phrog_341 major tail protein tail 1 24203 24658
NP_075485.1 NC_002661_p22 hypothetical protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 11125 11904
NP_075473.1 NC_002661_p10 hypothetical protein phrog_750 unknown function unknown function -1 5776 6141
NP_075483.1 NC_002661_p20 hypothetical protein phrog_1902 unknown function unknown function 1 9856 10005
NP_075512.2 NC_002661_p50 hypothetical protein phrog_167 tail length tape measure protein tail 1 25280 31483
NP_075474.1 NC_002661_p11 hypothetical protein phrog_640 unknown function unknown function 1 6196 6411
NP_075506.1 NC_002661_p44 hypothetical protein phrog_25 head closure Hc1 connector 1 22309 22641
NP_075477.1 NC_002661_p14 hypothetical protein phrog_983 unknown function unknown function 1 6966 7268
NP_075518.1 NC_002661_p55 hypothetical protein phrog_257 minor tail protein tail 1 36116 37582
NP_597939.1 NC_002661_p25 hypothetical protein phrog_17851 unknown function unknown function 1 12541 12648
NP_075520.1 NC_002661_p57 hypothetical protein phrog_276 unknown function unknown function 1 38175 38474
NP_075522.1 NC_002661_p59 amidase phrog_489 endolysin lysis 1 38923 40377
NP_075492.1 NC_002661_p30 hypothetical protein phrog_2027 unknown function unknown function 1 14083 14328
NP_075494.1 NC_002661_p32 hypothetical protein phrog_555 unknown function unknown function 1 14783 15019
NP_075495.1 NC_002661_p33 phi PVL ORF 57 analogue phrog_152 RinB-like transcriptional activator transcription regulation 1 15009 15164
NP_075490.1 NC_002661_p28 phi PVL ORF 52 analogue phrog_266 unknown function unknown function 1 13278 13526
NP_075475.1 NC_002661_p12 phi PVL ORF 37 analogue phrog_534 DNA binding protein DNA, RNA and nucleotide metabolism 1 6436 6699
NP_075515.1 NC_002661_p52 hypothetical protein phrog_326 tail protein with endopeptidase domain other 1 32317 33900
NP_075487.1 NC_002661_p24 hypothetical protein phrog_31719 unknown function unknown function 1 12300 12497
NP_075507.1 NC_002661_p45 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 22668 23039
NP_075500.1 NC_002661_p38 terminase small subunit phrog_361 terminase small subunit head and packaging 1 16789 17094
NP_075499.1 NC_002661_p37 hypothetical protein phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 16346 16660
NP_075501.1 NC_002661_p39 terminase large subunit phrog_9 terminase large subunit head and packaging 1 17084 18775
NP_075511.1 NC_002661_p49 hypothetical protein phrog_187 head-tail adaptor connector 1 24716 25066
NP_075504.1 NC_002661_p42 hypothetical protein phrog_10 major head protein head and packaging 1 20787 21950
NP_075482.1 NC_002661_p19 hypothetical protein phrog_398 unknown function unknown function 1 9185 9859
NP_075479.1 NC_002661_p16 hypothetical protein phrog_2205 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 7546 8082
NP_075468.1 NC_002661_p5 hypothetical protein phrog_87 metallo-protease other -1 3167 3628
NP_075484.1 NC_002661_p21 hypothetical protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 10345 11115
NP_075481.1 NC_002661_p18 ssDNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 8730 9173
NP_075465.1 NC_002661_p2 phi PVL ORF 30 analogue phrog_716 Na/K ATPase other 1 1444 2058
NP_075508.1 NC_002661_p46 hypothetical protein phrog_78 tail terminator connector 1 23040 23435
NP_075480.1 NC_002661_p17 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 8083 8733
NP_075523.1 NC_002661_p60 LukS-PV phrog_965 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 40767 41705
NP_075470.1 NC_002661_p7 antirepressor phrog_373 anti-repressor transcription regulation 1 4357 4905
NP_075505.1 NC_002661_p43 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 22019 22297
NP_075491.1 NC_002661_p29 phi PVL ORF 53 analogue phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 13519 14046
NP_075517.1 NC_002661_p54 hypothetical protein phrog_287 minor tail protein tail 1 34206 36116
NP_075488.1 NC_002661_p26 phi PVL ORF 50 analogue phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 12649 13017
NP_075516.1 NC_002661_p53 hypothetical protein phrog_574 unknown function unknown function 1 33900 34190
NP_075524.1 NC_002661_p61 LukF-PV phrog_965 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 41707 42684
NP_075466.1 NC_002661_p3 hypothetical protein phrog_1776 unknown function unknown function -1 2291 2686
NP_075464.1 NC_002661_p1 integrase phrog_1 integrase integration and excision -1 113 1318
NP_075502.1 NC_002661_p40 portal protein phrog_12 portal protein head and packaging 1 18780 20018
NP_075472.1 NC_002661_p9 hypothetical protein phrog_2366 unknown function unknown function -1 5296 5505
NP_075519.1 NC_002661_p56 hypothetical protein phrog_300 tail fiber protein tail 1 37582 37971
NP_075497.1 NC_002661_p35 hypothetical protein phrog_11354 unknown function unknown function 1 15389 15739
NP_075496.1 NC_002661_p34 hypothetical protein phrog_386 unknown function unknown function 1 15232 15432
NP_075467.1 NC_002661_p4 hypothetical protein phrog_1759 unknown function unknown function -1 2715 3149
NP_075493.1 NC_002661_p31 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 14525 14758
NP_075498.1 NC_002661_p36 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 15752 16189
NP_075489.1 NC_002661_p27 phi PVL ORF 51 analogue phrog_258 virulence associated other 1 13021 13263
NP_075521.1 NC_002661_p58 holin phrog_263 holin lysis 1 38610 38912
NP_075514.1 NC_002661_p51 hypothetical protein phrog_33 distal tail protein Dit tail 1 31483 32058
NP_075478.1 NC_002661_p15 phi PVL ORF 39 analogue phrog_401 unknown function unknown function 1 7273 7533
NP_075503.1 NC_002661_p41 protease phrog_94 head maturation protease head and packaging 1 20002 20775
NP_075471.1 NC_002661_p8 hypothetical protein phrog_29672 unknown function unknown function 1 4889 5134
NP_075509.1 NC_002661_p47 major tail protein phrog_88 major tail protein tail 1 23470 24111
NP_075476.1 NC_002661_p13 phi PVL ORF 38 analogue phrog_369 unknown function unknown function 1 6712 6873
NP_075469.1 NC_002661_p6 repressor phrog_8 transcriptional regulator transcription regulation -1 3641 3955
NP_075486.1 NC_002661_p23 hypothetical protein phrog_433 unknown function unknown function 1 12069 12290